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(-) Description

Title :  JAK1 KINASE (JH1 DOMAIN) IN COMPLEX WITH COMPOUND 26
 
Authors :  J. M. Murray
Date :  14 Mar 12  (Deposition) - 30 May 12  (Release) - 11 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Jak1, Kinase Domain, Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. J. Kulagowski, W. Blair, R. J. Bull, C. Chang, G. Deshmukh, H. J. Dyke C. Eigenbrot, N. Ghilardi, P. Gibbons, T. K. Harrison, P. R. Hewitt, M. Liimatta, C. A. Hurley, A. Johnson, T. Johnson, J. R. Kenny, P. Bir Kohli, R. J. Maxey, R. Mendonca, K. Mortara, J. Murray, R. Narukulla, S. Shia, M. Steffek, S. Ubhayakar, M. Ultsch, A. Van Abbema, S. I. Ward, B. Waszkowycz, M. Zak
Identification Of Imidazo-Pyrrolopyridines As Novel And Potent Jak1 Inhibitors.
J. Med. Chem. V. 55 5901 2012
PubMed-ID: 22591402  |  Reference-DOI: 10.1021/JM300438J

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK1
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: KINASE DOMAIN, UNP RESIDUES 854-1154
    Gene: JAK1, JAK1A, JAK1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 1, JAK-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
10NT2Ligand/Ion[4-(IMIDAZO[4,5-D]PYRROLO[2,3-B]PYRIDIN-1(6H)-YL)PIPERIDIN-1-YL][(2S)-1-(PROPAN-2-YL)PYRROLIDIN-2-YL]METHANONE
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3PTR4Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:881 , GLY A:882 , GLU A:883 , GLY A:884 , VAL A:889 , ALA A:906 , GLU A:957 , PHE A:958 , LEU A:959 , GLY A:962 , ASP A:1003 , ARG A:1007 , ASN A:1008 , LEU A:1010 , GLY A:1020 , ASP A:1021 , HOH A:1305 , HOH A:1316BINDING SITE FOR RESIDUE 0NT A 1201
2AC2SOFTWAREGLY A:1097 , GLY B:1097 , GLN B:1098 , HOH B:1467BINDING SITE FOR RESIDUE PEG B 1201
3AC3SOFTWARELEU B:881 , GLY B:882 , GLU B:883 , GLY B:884 , VAL B:889 , ALA B:906 , GLU B:957 , PHE B:958 , LEU B:959 , ASP B:1003 , ARG B:1007 , ASN B:1008 , LEU B:1010 , GLY B:1020 , ASP B:1021 , HOH B:1309 , HOH B:1314BINDING SITE FOR RESIDUE 0NT B 1202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E5W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4E5W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E5W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E5W)

(-) Exons   (0, 0)

(no "Exon" information available for 4E5W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4e5wa_ A: automated matches                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..................hhh.eeeeeeeee...eeeeeeee........eeeeeeee..hhhhhhhhhhhhhh........eeeeee...eeeeee.....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee......eee.......hhhhhhhhhhhhheeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4e5w A  853 GDIVSEKKPATEVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKNHIADLKKEIEILRNLYHENIVKYKGICTENGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   862       872       882       892       902       917       927       937       950       960       970       980       990      1000      1010      1020      1030   || 1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150    
                                                                                    911|                          946|                                                                                1034-PTR                                                                                                                    
                                                                                     917                           950                                                                                 1035-PTR                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4e5wb_ B: automated matches                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh.eeeeeeeee...eeeeeeee........eeeeeeee...hhhhhhhhhhhhhh........eeeeee...eeeeee.....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee....eee.......hhhhhhhhhhhhheeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4e5w B  865 VDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPNHIADLKKEIEILRNLYHENIVKYKGICTENGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIEKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 1153
                                   874       884       894       904       918       928       938       951       961       971       981       991      1001      1011      1021      1033||    1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153
                                                                         912|                          946|                                                                           1029| ||                                                                                                                      
                                                                          917                           950                                                                            1032 ||                                                                                                                      
                                                                                                                                                                                         1034-PTR                                                                                                                   
                                                                                                                                                                                          1035-PTR
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E5W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E5W)

(-) Gene Ontology  (42, 42)

Asymmetric/Biological Unit(hide GO term definitions)

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  4e5w
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  JAK1_HUMAN | P23458
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK1_HUMAN | P23458: 3eyg 3eyh 4e4l 4e4n 4ehz 4ei4 4fk6 4gs0 4i5c 4ivb 4ivc 4ivd 4k6z 4k77 4l00 4l01 5e1e 5hx8 5ixd 5ixi 5khw 5khx 5l04

(-) Related Entries Specified in the PDB File

4e4l 4e4m 4e4n 4e6d 4e6q