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(-) Description

Title :  CRYSTAL STRUCTURE OF JAK1 IN COMPLEX WITH ADP
 
Authors :  S. Han, N. L. Caspers
Date :  16 Jun 16  (Deposition) - 09 Nov 16  (Release) - 09 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.47
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Jak1, Kinase, Inhibitor, Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. L. Caspers, S. Han, F. Rajamohan, L. R. Hoth, K. F. Geoghegan, T. A. Subashi, J. D. Knafels, M. L. Vazquez, N. Kaila, C. N. Cronin, E. Johnson, R. G. Kurumbail
Development Of A High-Throughput Crystal Structure-Determination Platform For Jak1 Using A Novel Metal-Chelator Soaking System
Acta Crystallogr. , Sect. F V. 72 840 2016
PubMed: search  |  Reference-DOI: 10.1107/S2053230X16016356

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK1
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: JAK1, JAK1A, JAK1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 1,JAK-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
3PTR4Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:881 , GLY A:882 , VAL A:889 , ALA A:906 , LYS A:908 , VAL A:938 , MET A:956 , GLU A:957 , PHE A:958 , LEU A:959 , GLU A:966 , ARG A:1007 , ASN A:1008 , ASP A:1021 , MG A:1202 , HOH A:1316 , HOH A:1322binding site for residue ADP A 1201
2AC2SOFTWAREASN A:1008 , ASP A:1021 , ADP A:1201binding site for residue MG A 1202
3AC3SOFTWARELEU B:881 , GLY B:882 , VAL B:889 , ALA B:906 , LYS B:908 , VAL B:938 , MET B:956 , GLU B:957 , PHE B:958 , LEU B:959 , GLU B:966 , ARG B:1007 , ASN B:1008 , ASP B:1021 , MG B:1202 , HOH B:1301 , HOH B:1302 , HOH B:1307 , HOH B:1311binding site for residue ADP B 1201
4AC4SOFTWAREASN B:1008 , ASP B:1021 , ADP B:1201binding site for residue MG B 1202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KHW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5KHW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KHW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KHW)

(-) Exons   (0, 0)

(no "Exon" information available for 5KHW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                       
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhh.eeeeeeeee...eeeeeeee.........eeeeeee..hhhhhhhhhhhhh........eeeeee...eeeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......eee.......hhhhhhhhhhhhheeehhhhhhhhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhh....hhhhh.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5khw A  867 PTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKHIADLKKEIEILRNLYHENIVKYKGICTENGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 1153
                                   876       886       896       906    || 922       932       942   ||  955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145        
                                                                      911|                         946|                                                                                1034-PTR                                                                                                                   
                                                                       918                          950                                                                                 1035-PTR                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                       
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhh.eeeeeeeee...eeeeeeee.........eeeeeee..hhhhhhhhhhhhh........eeeeee...eeeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee......eee.......hhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhh......hhhhhhhhhhh.....hhhhhhhhhhhh..........hhhhhhhhhh....hhhhh.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5khw B  867 PTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKHIADLKKEIEILRNLYHENIVKYKGICTENGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 1153
                                   876       886       896       906    || 922       932       942   ||  955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145        
                                                                      911|                         946|                                                                                1034-PTR                                                                                                                   
                                                                       918                          950                                                                                 1035-PTR
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KHW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KHW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KHW)

(-) Gene Ontology  (42, 42)

Asymmetric Unit(hide GO term definitions)

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  5khw
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  JAK1_HUMAN | P23458
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK1_HUMAN | P23458: 3eyg 3eyh 4e4l 4e4n 4e5w 4ehz 4ei4 4fk6 4gs0 4i5c 4ivb 4ivc 4ivd 4k6z 4k77 4l00 4l01 5e1e 5hx8 5ixd 5ixi 5khx 5l04

(-) Related Entries Specified in the PDB File

5khx