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(-) Description

Title :  THE JAK1 KINASE DOMAIN IN COMPLEX WITH INHIBITOR
 
Authors :  R. Fong, P. J. Lupardus
Date :  28 Nov 12  (Deposition) - 22 May 13  (Release) - 12 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. A. Hurley, W. S. Blair, R. J. Bull, C. Chang, P. H. Crackett, G. Deshmukh, H. J. Dyke, R. Fong, N. Ghilardi, P. Gibbons, P. R. Hewitt, A. Johnson, T. Johnson, J. R. Kenny, P. B. Kohli, J. J. Kulagowski, M. Liimatta, P. J. Lupardus, R. J. Maxey, R. Mendonca, R. Narukulla, R. Pulk, S. Ubhayakar, A. Van Abbema, S. I. Ward, B. Waszkowycz, M. Zak
Novel Triazolo-Pyrrolopyridines As Inhibitors Of Janus Kinase 1.
Bioorg. Med. Chem. Lett. V. 23 3592 2013
PubMed-ID: 23642482  |  Reference-DOI: 10.1016/J.BMCL.2013.04.018

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK1
    ChainsA, B
    EC Number2.7.10.2
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Taxid7108
    FragmentPROTEIN KINASE 2 DOMAIN RESIDUES 854-1154
    GeneJAK1, JAK1A, JAK1B
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymJANUS KINASE 1, JAK-1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1C5I2Ligand/Ion3-OXO-3-[(3R)-3-(PYRROLO[2,3-B][1,2,3]TRIAZOLO[4,5-D]PYRIDIN-1(6H)-YL)PIPERIDIN-1-YL]PROPANENITRILE
2EDO4Ligand/Ion1,2-ETHANEDIOL
3PTR4Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1C5I1Ligand/Ion3-OXO-3-[(3R)-3-(PYRROLO[2,3-B][1,2,3]TRIAZOLO[4,5-D]PYRIDIN-1(6H)-YL)PIPERIDIN-1-YL]PROPANENITRILE
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1C5I1Ligand/Ion3-OXO-3-[(3R)-3-(PYRROLO[2,3-B][1,2,3]TRIAZOLO[4,5-D]PYRIDIN-1(6H)-YL)PIPERIDIN-1-YL]PROPANENITRILE
2EDO4Ligand/Ion1,2-ETHANEDIOL
3PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:881 , GLY A:882 , GLU A:883 , GLY A:884 , GLY A:887 , LYS A:888 , VAL A:889 , ALA A:906 , LYS A:908 , MET A:956 , GLU A:957 , PHE A:958 , LEU A:959 , ASN A:1008 , LEU A:1010 , GLY A:1020 , ASP A:1021 , HOH A:1332 , HOH A:1356BINDING SITE FOR RESIDUE C5I A 1201
2AC2SOFTWAREARG B:879 , LEU B:881 , PRO B:960 , GLY B:962 , C5I B:1205BINDING SITE FOR RESIDUE EDO B 1201
3AC3SOFTWAREASP B:866 , PRO B:867 , HIS B:869 , PHE B:870BINDING SITE FOR RESIDUE EDO B 1202
4AC4SOFTWARELEU B:875 , GLU B:890 , CYS B:892 , LYS B:953BINDING SITE FOR RESIDUE EDO B 1203
5AC5SOFTWAREGLN A:1098 , GLY B:1097 , GLN B:1098BINDING SITE FOR RESIDUE EDO B 1204
6AC6SOFTWARELEU B:881 , GLY B:882 , GLU B:883 , GLY B:884 , GLY B:887 , LYS B:888 , VAL B:889 , ALA B:906 , LYS B:908 , MET B:956 , GLU B:957 , PHE B:958 , LEU B:959 , ARG B:1007 , ASN B:1008 , LEU B:1010 , GLY B:1020 , ASP B:1021 , EDO B:1201 , HOH B:1356BINDING SITE FOR RESIDUE C5I B 1205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I5C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I5C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I5C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I5C)

(-) Exons   (0, 0)

(no "Exon" information available for 4I5C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4i5ca_ A: automated matches                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh.eeeeeeeee...eeeeeeee........eeeeeeee...hhhhhhhhhhhhhh........eeeee....eeeee.....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee......ee.......hhhhhhhhhhh..eehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.........hhhhhhhhhh....hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4i5c A  865 VDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPNHIADLKKEIEILRNLYHENIVKYKGICTNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   874       884       894       904       918       928       938      |952       962       972       982       992      1002      1012      1022      1033||    1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153 
                                                                         912|                         945|                                                                            1030| ||                                                                                                                       
                                                                          917                          950                                                                             1032 ||                                                                                                                       
                                                                                                                                                                                         1034-PTR                                                                                                                    
                                                                                                                                                                                          1035-PTR                                                                                                                   

Chain B from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4i5cb_ B: automated matches                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhh.eeeeeeeee...eeeeeeee........eeeeeeee...hhhhhhhhhhhhh........eeeee....eeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhh....hhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4i5c B  853 GDIVSEKKPATEVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPHIADLKKEIEILRNLYHENIVKYKGICTEGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEyyTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 1154
                                   862       872       882       892       902       912|      927       937       951       961       971       981       991      1001      1011      1021      1031  ||  1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151   
                                                                                     912|                         946|                                                                               1034-PTR                                                                                                                    
                                                                                      918                          951                                                                                1035-PTR                                                                                                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I5C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I5C)

(-) Gene Ontology  (42, 42)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK1_HUMAN | P234583eyg 3eyh 4e4l 4e4n 4e5w 4ehz 4ei4 4fk6 4gs0 4ivb 4ivc 4ivd 4k6z 4k77 4l00 4l01 5e1e 5hx8 5ixd 5ixi 5khw 5khx 5l04

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