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(-) Description

Title :  CRYSTAL STRUCTURE OF HIV-1 GP120 CORE IN COMPLEX WITH NBD-11021, A SMALL MOLECULE CD4-ANTAGONIST
 
Authors :  Y. D. Kwon, A. K. Debnath, P. D. Kwong
Date :  18 Dec 14  (Deposition) - 09 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Hiv-1 Gp120, Nbd-11021, Small Molecule Cd4-Antagonist, Phe 43 Cavity, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Curreli, Y. D. Kwon, H. Zhang, D. Scacalossi, D. S. Belov, A. A. Tikhonov, I. A. Andreev, A. Altieri, A. V. Kurkin, P. D. Kwong, A. K. Debnath
Structure-Based Design Of A Small Molecule Cd4-Antagonist With Broad Spectrum Anti-Hiv-1 Activity.
J. Med. Chem. V. 58 6909 2015
PubMed-ID: 26301736  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00709

(-) Compounds

Molecule 1 - ENVELOPE GLYCOPROTEIN GP120
    Chains: A, B, C, D
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: 293F
    Expression System Common: HUMAN
    Expression System Plasmid: PVRC8400
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 43-122, 201-303, 325-486
    Gene: ENV
    Mutation: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Strain: CLADE A/E 93TH057

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 48)

Asymmetric Unit (3, 48)
No.NameCountTypeFull Name
13ZM4Ligand/Ion5-(4-CHLOROPHENYL)-N-{(S)-[5-(HYDROXYMETHYL)-4-METHYL-1,3-THIAZOL-2-YL][(2R)-PIPERIDIN-2-YL]METHYL}-1H-PYRROLE-2-CARBOXAMIDE
2EPE4Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3NAG40Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (3, 11)
No.NameCountTypeFull Name
13ZM1Ligand/Ion5-(4-CHLOROPHENYL)-N-{(S)-[5-(HYDROXYMETHYL)-4-METHYL-1,3-THIAZOL-2-YL][(2R)-PIPERIDIN-2-YL]METHYL}-1H-PYRROLE-2-CARBOXAMIDE
2EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (3, 11)
No.NameCountTypeFull Name
13ZM1Ligand/Ion5-(4-CHLOROPHENYL)-N-{(S)-[5-(HYDROXYMETHYL)-4-METHYL-1,3-THIAZOL-2-YL][(2R)-PIPERIDIN-2-YL]METHYL}-1H-PYRROLE-2-CARBOXAMIDE
2EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (3, 13)
No.NameCountTypeFull Name
13ZM1Ligand/Ion5-(4-CHLOROPHENYL)-N-{(S)-[5-(HYDROXYMETHYL)-4-METHYL-1,3-THIAZOL-2-YL][(2R)-PIPERIDIN-2-YL]METHYL}-1H-PYRROLE-2-CARBOXAMIDE
2EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (3, 13)
No.NameCountTypeFull Name
13ZM1Ligand/Ion5-(4-CHLOROPHENYL)-N-{(S)-[5-(HYDROXYMETHYL)-4-METHYL-1,3-THIAZOL-2-YL][(2R)-PIPERIDIN-2-YL]METHYL}-1H-PYRROLE-2-CARBOXAMIDE
2EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (48, 48)

Asymmetric Unit (48, 48)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:234 , THR A:236BINDING SITE FOR RESIDUE NAG A 501
02AC2SOFTWAREHIS A:85 , ASN A:229 , ASN A:241BINDING SITE FOR RESIDUE NAG A 502
03AC3SOFTWARELEU A:261 , ASN A:262 , ARG A:379 , CYS A:445 , VAL A:446 , SER A:447 , NAG A:509 , HOH A:603 , HOH A:611 , HOH A:612 , HOH A:687BINDING SITE FOR RESIDUE NAG A 503
04AC4SOFTWAREASN A:276 , ASN A:279BINDING SITE FOR RESIDUE NAG A 504
05AC5SOFTWAREGLU A:268 , GLU A:269 , ILE A:270 , ASN A:289 , LYS A:348 , LYS D:59 , HIS D:61BINDING SITE FOR RESIDUE NAG A 505
06AC6SOFTWAREASN A:295 , TYR A:330 , HOH A:682BINDING SITE FOR RESIDUE NAG A 506
07AC7SOFTWAREASN A:334 , THR A:413BINDING SITE FOR RESIDUE NAG A 507
08AC8SOFTWAREMET A:373 , ASN A:386 , THR A:388 , GLN B:203BINDING SITE FOR RESIDUE NAG A 508
09AC9SOFTWAREASN A:262 , ASN A:448 , NAG A:503BINDING SITE FOR RESIDUE NAG A 509
10BC1SOFTWAREASP A:368 , GLU A:370 , SER A:375 , PHE A:376 , ASN A:377 , PHE A:382 , ASN A:425 , MET A:426 , TRP A:427 , GLN A:428 , GLY A:429BINDING SITE FOR RESIDUE 3ZM A 510
11BC2SOFTWARELEU A:52 , CYS A:54 , ALA A:73 , GLN A:103 , ASP A:107 , TYR A:217 , ARG B:327 , LYS B:421 , GLN B:422 , ILE B:423BINDING SITE FOR RESIDUE EPE A 511
12BC3SOFTWAREASN B:234 , THR B:236 , HIS B:352BINDING SITE FOR RESIDUE NAG B 501
13BC4SOFTWAREASN B:229 , ASN B:241BINDING SITE FOR RESIDUE NAG B 502
14BC5SOFTWARELEU B:261 , ASN B:262 , ARG B:379 , CYS B:445 , VAL B:446 , SER B:447 , NAG B:509 , HOH B:603 , HOH B:606 , HOH B:610 , HOH B:616 , ASN C:354 , ASN C:355 , SER C:464BINDING SITE FOR RESIDUE NAG B 503
15BC6SOFTWAREASN B:276 , ASN B:279BINDING SITE FOR RESIDUE NAG B 504
16BC7SOFTWAREGLU B:268 , ILE B:270 , ASN B:289BINDING SITE FOR RESIDUE NAG B 505
17BC8SOFTWAREASN B:295 , TYR B:330 , VAL B:446 , HOH B:660 , HOH C:703 , HOH C:747BINDING SITE FOR RESIDUE NAG B 506
18BC9SOFTWAREASN B:334 , LYS B:337 , THR B:413 , HOH B:712BINDING SITE FOR RESIDUE NAG B 507
19CC1SOFTWAREASN B:386 , THR B:388BINDING SITE FOR RESIDUE NAG B 508
20CC2SOFTWAREASN B:262 , ASN B:448 , NAG B:503 , HOH B:613 , HOH B:685 , HOH B:719 , LYS C:350 , ASN C:355BINDING SITE FOR RESIDUE NAG B 509
21CC3SOFTWAREVAL B:255 , ASP B:368 , GLU B:370 , SER B:375 , PHE B:376 , ASN B:377 , ASN B:425 , MET B:426 , TRP B:427 , GLN B:428 , GLY B:429BINDING SITE FOR RESIDUE 3ZM B 510
22CC4SOFTWAREARG A:327 , LYS A:421 , GLN A:422 , ILE A:423 , LEU B:52 , CYS B:54 , HIS B:72 , ALA B:73 , GLN B:103 , ASP B:107BINDING SITE FOR RESIDUE EPE B 511
23CC5SOFTWAREASN C:234 , THR C:236 , HIS C:352 , HOH C:791BINDING SITE FOR RESIDUE NAG C 501
24CC6SOFTWARELYS C:231 , LYS C:240 , ASN C:241BINDING SITE FOR RESIDUE NAG C 502
25CC7SOFTWARELYS C:252 , ASN C:262 , ARG C:379 , CYS C:445 , VAL C:446 , SER C:447 , HOH C:617 , HOH C:626 , HOH C:627BINDING SITE FOR RESIDUE NAG C 503
26CC8SOFTWAREHIS B:61 , ASN C:276 , THR C:278 , ASN C:279BINDING SITE FOR RESIDUE NAG C 504
27CC9SOFTWAREGLU C:268 , GLU C:269 , ILE C:270 , ASN C:289 , HOH C:642 , HOH C:682 , HOH C:737BINDING SITE FOR RESIDUE NAG C 505
28DC1SOFTWAREASN C:295 , GLU C:332 , VAL C:446BINDING SITE FOR RESIDUE NAG C 506
29DC2SOFTWAREASN C:334 , THR C:336 , LYS C:337 , HOH C:749BINDING SITE FOR RESIDUE NAG C 507
30DC3SOFTWARELYS B:252 , ASN C:354 , ASN C:355 , HOH C:660 , HOH C:701BINDING SITE FOR RESIDUE NAG C 508
31DC4SOFTWAREASN C:386 , THR C:388BINDING SITE FOR RESIDUE NAG C 509
32DC5SOFTWAREASN C:392 , THR C:394 , CYS C:395BINDING SITE FOR RESIDUE NAG C 510
33DC6SOFTWARESER C:291 , ASN C:448 , HOH C:667BINDING SITE FOR RESIDUE NAG C 511
34DC7SOFTWAREASP C:368 , GLU C:370 , SER C:375 , PHE C:376 , ASN C:377 , PHE C:382 , ASN C:425 , MET C:426 , TRP C:427 , GLN C:428 , GLY C:429 , HOH C:677BINDING SITE FOR RESIDUE 3ZM C 512
35DC8SOFTWARELEU C:52 , CYS C:54 , HIS C:72 , ALA C:73 , GLN C:103 , ASP C:107 , HOH C:684 , HOH C:700 , HOH C:752BINDING SITE FOR RESIDUE EPE C 513
36DC9SOFTWAREASN D:234 , THR D:236 , HIS D:352BINDING SITE FOR RESIDUE NAG D 501
37EC1SOFTWAREASP D:230 , LYS D:240 , ASN D:241 , HOH D:740BINDING SITE FOR RESIDUE NAG D 502
38EC2SOFTWARELYS D:252 , ASN D:262 , CYS D:445 , VAL D:446 , SER D:447 , HOH D:607 , HOH D:609 , HOH D:610BINDING SITE FOR RESIDUE NAG D 503
39EC3SOFTWAREASN D:276 , ASN D:279BINDING SITE FOR RESIDUE NAG D 504
40EC4SOFTWAREGLU D:268 , GLU D:269 , ILE D:270 , ASN D:289 , HOH D:613 , HOH D:751BINDING SITE FOR RESIDUE NAG D 505
41EC5SOFTWAREASN D:295 , GLU D:332BINDING SITE FOR RESIDUE NAG D 506
42EC6SOFTWAREASN D:334 , THR D:336 , LYS D:337 , HOH D:766 , HOH D:812BINDING SITE FOR RESIDUE NAG D 507
43EC7SOFTWAREASN D:355 , HOH D:733BINDING SITE FOR RESIDUE NAG D 508
44EC8SOFTWAREASN D:386 , THR D:388BINDING SITE FOR RESIDUE NAG D 509
45EC9SOFTWAREASN D:392 , CYS D:395BINDING SITE FOR RESIDUE NAG D 510
46FC1SOFTWARESER D:291 , ASN D:448 , HOH D:716BINDING SITE FOR RESIDUE NAG D 511
47FC2SOFTWAREASP D:368 , GLU D:370 , SER D:375 , PHE D:376 , ASN D:377 , PHE D:382 , ASN D:425 , MET D:426 , TRP D:427 , GLN D:428 , GLY D:429 , GLY D:473 , HOH D:830 , HOH D:831BINDING SITE FOR RESIDUE 3ZM D 512
48FC3SOFTWARELEU D:52 , HIS D:72 , ALA D:73 , GLN D:103 , ASP D:107 , HOH D:652 , HOH D:658 , HOH D:784BINDING SITE FOR RESIDUE EPE D 513

(-) SS Bonds  (28, 28)

Asymmetric Unit
No.Residues
1A:54 -A:74
2A:119 -A:205
3A:218 -A:247
4A:228 -A:239
5A:296 -A:331
6A:378 -A:445
7A:385 -A:418
8B:54 -B:74
9B:119 -B:205
10B:218 -B:247
11B:228 -B:239
12B:296 -B:331
13B:378 -B:445
14B:385 -B:418
15C:54 -C:74
16C:119 -C:205
17C:218 -C:247
18C:228 -C:239
19C:296 -C:331
20C:378 -C:445
21C:385 -C:418
22D:54 -D:74
23D:119 -D:205
24D:218 -D:247
25D:228 -D:239
26D:296 -D:331
27D:378 -D:445
28D:385 -D:418

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RZ8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RZ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RZ8)

(-) Exons   (0, 0)

(no "Exon" information available for 4RZ8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeee.......hhhhhhhhhheee......eee.....eeee...hhhhhhhhhhhhhhhhhhh...eee....eee.............eee....eeeeee.......eeee..eeee.............eee.........eee..........eeeeeeeeeeeeeee.......eeeeeeehhhhhhhhhhhhhhhhhhh...eeee......hhhhhheeeee..eeeee.............eeeeeeee..eee......eee........eeeeeeeeeeeeee........eeeeee....hhhhhhh....eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rz8 A  44 VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFFYCNTTQLFNNTCINGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE 492
                                    53        63        73        83        93       103       113       123||     206       216       226       236       246       256       266       276       286       296    || 328       338       348      |359       369       379       389      |413       423       433       443       453       463       473       483         
                                                                                                          124|                                                                                                    301|                            355|                                    396|                                                                                 
                                                                                                           198                                                                                                     324                             357                                     411                                                                                 


Chain B from PDB  Type:PROTEIN  Length:334
                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeee.......hhhhhhhhhheee......eee.....eeee...hhhhhhhhhhhhhhhhhhh...eee....eee.............eee....eeeeee.......eeee..eeee.............eee.........eee..........eeeeeeeeeeeeeee.......eeeeeeehhhhhhhhhhhhhhhhhhh...eeee......hhhhhheeeee..eeeee........eeeeeeee..eee......eee........eeeeeeeeeeeeee........eeeeee....hhhhhhhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rz8 B  44 VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFFYCNTTQLFNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE 492
                                    53        63        73        83        93       103       113       123||     206       216       226       236       246       256       266       276       286       296    || 328       338       348      |359       369       379       389 ||    418       428       438       448       458       468       478       488    
                                                                                                          124|                                                                                                    301|                            355|                               391|                                                                                 
                                                                                                           198                                                                                                     324                             357                                411                                                                                 


Chain C from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeee.......hhhhhhhhhheee......eeee....eeee...hhhhhhhhhhhhhhhhhhh...eee....eee.............eee....eeeeee.......eeee..eeee.............eee.........eee..........eeeeeeeeeeeeeee.......eeeeeeehhhhhhhhhhhhhhhhhhh...eeee......hhhhhheeeee..eeeee......hhhhh..eeeeeeee..eee......eee........eeeeeeeeeeeeee........eeeeee....hhhhhhhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rz8 C  44 VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFFYCNTTQLFNNTCINGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE 492
                                    53        63        73        83        93       103       113       123||     206       216       226       236       246       256       266       276       286       296    || 328       338       348      |359       369       379       389      |413       423       433       443       453       463       473       483         
                                                                                                          124|                                                                                                    301|                            355|                                    396|                                                                                 
                                                                                                           198                                                                                                     324                             357                                     411                                                                                 


Chain D from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeee.......hhhhhhhhhheee......eeee....eeee...hhhhhhhhhhhhhhhhhhh...eee....eee.............eee....eeeeee.......eeee..eeee.............eee.........eee..........eeeeeeeeeeeeeee.......eeeeeeehhhhhhhhhhhhhhhhhhh...eeee......hhhhhheeeee..eeeee......hhhhh..eeeeeeee..eee......eee........eeeeeeeeeeeeee........eeeeee....hhhhhhhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rz8 D  44 VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHSFNCRGEFFYCNTTQLFNNTCINGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE 492
                                    53        63        73        83        93       103       113       123||     206       216       226       236       246       256       266       276       286       296    || 328       338       348      |359       369       379       389      |413       423       433       443       453       463       473       483         
                                                                                                          124|                                                                                                    301|                            355|                                    396|                                                                                 
                                                                                                           198                                                                                                     324                             357                                     411
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RZ8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RZ8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RZ8)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)

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  Q0ED31_9HIV1 | Q0ED31
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q0ED31_9HIV1 | Q0ED31: 3ngb 3se8 3se9 3tgt 3u7y 4dko 4dkp 4dkq 4dkr 4dku 4dkv 4dvs 4dvt 4dvv 4dvw 4dvx 4h8w 4i54 4jb9 4jdt 4jkp 4jpv 4jpw 4lsp 4lsq 4lsr 4lsu 4olu 4olv 4olw 4olx 4oly 4olz 4om0 4om1 4p9h 4rfn 4rfo 4xnz 4xvt 4ydj 4ydk 4ydl 4yfl

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