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(-) Description

Title :  THE STRUCTURE OF MBP-MCL1 BOUND TO LIGAND 6 AT 2.0A
 
Authors :  M. C. Clifton, D. M. Dranow
Date :  09 Oct 14  (Deposition) - 06 May 15  (Release) - 13 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Apoptosis, Protein-Protein Interaction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. C. Clifton, D. M. Dranow, A. Leed, B. Fulroth, J. W. Fairman, J. Abendroth, K. A. Atkins, E. Wallace, D. Fan, G. Xu, Z. J. Ni, D. Daniels, J. Van Drie, G. Wei, A. B. Burgin, T. R. Golub, B. K. Hubbard M. H. Serrano-Wu
A Maltose-Binding Protein Fusion Construct Yields A Robust Crystallography Platform For Mcl1.
Plos One V. 10 25010 2015
PubMed-ID: 25909780  |  Reference-DOI: 10.1371/JOURNAL.PONE.0125010

(-) Compounds

Molecule 1 - MBP-MCL1 CHIMERA PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP P0AEX9 RESIDUES 27-392,UNP Q07820 RESIDUES 174-321
    Gene: MALE, B4034, JW3994, MCL1, BCL2L3
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: ESCHERICHIA COLI, HOMO SAPIENS
    Organism Taxid: 83333, 9606
    Strain: K12

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
13R71Ligand/Ion4-ETHENYL-2-[(PHENYLSULFONYL)AMINO]BENZOIC ACID
2FMT10Ligand/IonFORMIC ACID
3MAL1Ligand/IonMALTOSE
4MG1Ligand/IonMAGNESIUM ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:-41 , ASP A:-131 , TRP A:-134 , GLU A:-43 , PRO A:-42 , ALA A:-133 , ARG A:-130 , GLU A:-85 , LYS A:-181 , ASP A:-182 , TRP A:34 , TRP A:144 , ARG A:148 , HOH A:625 , HOH A:640 , HOH A:705 , HOH A:716 , HOH A:734 , HOH A:766binding site for residue MAL A 401
02AC2SOFTWAREPHE A:228 , MET A:231 , VAL A:249 , MET A:250 , VAL A:253 , THR A:266 , LEU A:267 , PHE A:270 , HOH A:808binding site for residue 3R7 A 402
03AC3SOFTWAREPRO A:75 , ASN A:76 , LYS A:77 , GLU A:78 , HOH A:584 , HOH A:706 , HOH A:780binding site for residue FMT A 403
04AC4SOFTWAREPRO A:-63 , ASN A:5 , HOH A:656 , HOH A:707 , HOH A:765binding site for residue FMT A 404
05AC5SOFTWAREMET A:134 , ASN A:136 , HOH A:742binding site for residue FMT A 405
06AC6SOFTWAREARG A:263 , THR A:266 , HOH A:808 , HOH A:864binding site for residue FMT A 406
07AC7SOFTWAREGLN A:139 , TYR A:175 , HOH A:641 , HOH A:683binding site for residue FMT A 407
08AC8SOFTWAREPRO A:-71 , PRO A:-70 , LYS A:-69 , GLU A:-65 , ASN A:-72binding site for residue FMT A 408
09AC9SOFTWAREMET A:125binding site for residue FMT A 409
10AD1SOFTWARESER A:247 , SER A:293 , ASP A:296 , HOH A:773binding site for residue FMT A 410
11AD2SOFTWAREARG A:300 , THR A:301 , ARG A:303 , ASP A:304 , HOH A:664binding site for residue FMT A 411
12AD3SOFTWARELYS A:166 , ASP A:167 , THR A:170 , VAL A:307 , ARG A:310 , MG A:413binding site for residue FMT A 412
13AD4SOFTWAREASP A:167 , FMT A:412 , HOH A:503 , HOH A:515 , HOH A:564 , HOH A:565binding site for residue MG A 413

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WMX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WMX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WMX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WMX)

(-) Exons   (0, 0)

(no "Exon" information available for 4WMX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:516
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeee.....hhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhh......eeeee..hhhhhhhh........hhhhhh..hhhhhhhhee..ee..eeeeee..eeeee.........hhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh..eeee....eeeeee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh..eeeeeehhhhhhhhhhhh..eeee...ee..ee...eeeeeeeee.....hhhhhhhhhhhh..hhhhhhhhhhhh...ee.hhhhhhhhh.hhhhhhhhhhhhhhee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4wmx A -196 GKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTGSELYRQSLEIISRYLREQATGAADTAPMGASGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHV  321
                                  -187      -177      -167      -157      -147      -137      -127      -117      -107       -97       -87       -77       -67       -57       -47       -37       -27   ||  -15        -5         5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315      
                                                                                                                                                                                                       -23|                                                                                                                                                                                                                                                                                                                                                     
                                                                                                                                                                                                        -20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WMX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WMX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WMX)

(-) Gene Ontology  (47, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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  4wmx
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  MCL1_HUMAN | Q07820
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MALE_ECOLI | P0AEX9: 1a7l 1anf 1dmb 1ez9 1ezo 1ezp 1fqa 1fqb 1fqc 1fqd 1hsj 1iud 1jvx 1jvy 1jw4 1jw5 1lax 1lls 1mdp 1mdq 1mg1 1mh3 1mh4 1mpb 1mpc 1mpd 1n3w 1n3x 1nl5 1nmu 1omp 1peb 1r6z 1svx 1t0k 1y4c 1ytv 1ziu 1zjl 1zkb 1zmg 2d21 2h25 2klf 2mv0 2n44 2n45 2nvu 2obg 2ok2 2r6g 2v93 2vgq 2xz3 2zxt 3a3c 3c4m 3csb 3csg 3d4c 3d4g 3dm0 3ef7 3ehs 3eht 3ehu 3f5f 3g7v 3g7w 3h3g 3h4z 3hpi 3hst 3io4 3io6 3ior 3iot 3iou 3iov 3iow 3j9p 3kjt 3l2j 3lbs 3lc8 3mbp 3mp1 3mp6 3mp8 3mq9 3n94 3o3u 3oai 3osq 3osr 3pgf 3puv 3puw 3pux 3puy 3puz 3pv0 3py7 3q25 3q26 3q27 3q28 3q29 3rlf 3rum 3ser 3ses 3set 3seu 3sev 3sew 3sex 3sey 3vfj 3w15 3wai 3woa 4b3n 4bl8 4bl9 4bla 4blb 4bld 4dxb 4dxc 4edq 4egc 4exk 4fe8 4feb 4fec 4fed 4giz 4gli 4ifp 4ikm 4irl 4jbz 4jkm 4keg 4khz 4ki0 4kv3 4kyc 4kyd 4kye 4log 4mbp 4n4x 4ndz 4o2x 4ogm 4pe2 4qsz 4qvh 4r0y 4rg5 4rwf 4rwg 4tsm 4wjv 4wms 4wmt 4wmu 4wmv 4wmw 4wrn 4wth 4wvh 4xa2 4xhs 4xr8 4xzs 4xzv 5aq9 5az6 5az7 5az8 5az9 5aza 5b3w 5b3x 5b3y 5b3z 5c7r 5cbn 5cfv 5dfm 5dis 5e24 5edu 5fio 5fsg 5gru 5gs2 5h7n 5h7q 5hz7 5hzv 5hzw 5i04 5i69 5ihj 5ii5 5iic 5iqz 5jj4 5jst 5jtq 5jtr 5ldf 5t03 5t05 5t0a 5ttd 5wpz 5wq6
        MCL1_HUMAN | Q07820: 2kbw 2mhs 2nl9 2nla 2pqk 3d7v 3io9 3kj0 3kj1 3kj2 3kz0 3mk8 3pk1 3twu 3wix 3wiy 4bpi 4bpj 4hw2 4hw3 4hw4 4oq5 4oq6 4wgi 4wmr 4wms 4wmt 4wmu 4wmv 4wmw 4zbf 4zbi 5c3f 5c6h 5fc4 5fdo 5fdr 5iez 5if4 5jsb 5ku9 5lof 5mes 5mev 5uum 5vkc

(-) Related Entries Specified in the PDB File

4wmr 4wms 4wmt 4wmu 4wmv 4wmw