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(-) Description

Title :  CRYSTAL STRUCTURE OF HTT36Q3H
 
Authors :  M. Kim
Date :  30 May 12  (Deposition) - 13 Mar 13  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Alpha Helix, Loop, Beta-Strand Hairpin, Beta Strand Hairpin, Disease Protein, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kim
Beta Conformation Of Polyglutamine Track Revealed By A Crystal Structure Of Huntingtin N-Terminal Region With Insertion Of Three Histidine Residues.
Prion V. 7 221 2013
PubMed-ID: 23370273  |  Reference-DOI: 10.4161/PRI.23807

(-) Compounds

Molecule 1 - MALTOSE-BINDING PERIPLASMIC PROTEIN,HUNTINGTIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: HUNTINGTIN PROTEIN EXON1 DOMAIN
    Gene: MALE, B4034, JW3994, HTT, HD, IT15
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12), HOMO SAPIENS
    Organism Taxid: 83333, 9606
    Strain: K12
    Synonym: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN,HUNTINGTON DISEASE PROTEIN,HD PROTEIN

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 31)

Asymmetric/Biological Unit (1, 31)
No.NameCountTypeFull Name
1ZN31Ligand/IonZINC ION

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU C:172 , HOH C:644 , HOH C:645BINDING SITE FOR RESIDUE ZN A 501
02AC2SOFTWAREGLU A:44BINDING SITE FOR RESIDUE ZN A 502
03AC3SOFTWAREHIS A:39BINDING SITE FOR RESIDUE ZN A 503
04AC4SOFTWARELYS A:137 , HIS A:203 , HOH A:624 , HOH A:625BINDING SITE FOR RESIDUE ZN A 504
05AC5SOFTWARETYR A:17BINDING SITE FOR RESIDUE ZN A 505
06AC6SOFTWAREHIS B:203 , HOH B:658BINDING SITE FOR RESIDUE ZN B 501
07AC7SOFTWAREGLU B:38BINDING SITE FOR RESIDUE ZN B 502
08AC8SOFTWAREGLN A:398 , ASP B:65 , HOH B:633BINDING SITE FOR RESIDUE ZN B 503
09AC9SOFTWARELYS B:26 , GLU B:288 , GLU C:288 , ZN C:506 , ZN C:507BINDING SITE FOR RESIDUE ZN B 504
10BC1SOFTWAREGLU B:172 , ZN B:510BINDING SITE FOR RESIDUE ZN B 505
11BC2SOFTWAREASP A:82 , TYR B:167 , LYS B:170 , ASP B:180BINDING SITE FOR RESIDUE ZN B 506
12BC3SOFTWAREGLU B:291 , ASP C:287 , GLU C:310 , ZN C:508BINDING SITE FOR RESIDUE ZN B 507
13BC4SOFTWAREASP B:287 , GLU B:310 , GLU C:291 , ZN C:508BINDING SITE FOR RESIDUE ZN B 508
14BC5SOFTWAREGLU B:328 , HOH B:603BINDING SITE FOR RESIDUE ZN B 509
15BC6SOFTWAREGLU A:278 , GLU B:172 , ZN B:505 , HOH B:632BINDING SITE FOR RESIDUE ZN B 510
16BC7SOFTWAREASP B:82 , HOH B:643BINDING SITE FOR RESIDUE ZN B 511
17BC8SOFTWAREHOH B:648 , HOH B:649BINDING SITE FOR RESIDUE ZN B 512
18BC9SOFTWARELYS C:1BINDING SITE FOR RESIDUE ZN C 501
19CC1SOFTWAREHIS C:39 , HOH C:612BINDING SITE FOR RESIDUE ZN C 502
20CC2SOFTWAREASP C:95 , HOH C:617 , HOH C:618BINDING SITE FOR RESIDUE ZN C 503
21CC3SOFTWARELYS C:256 , GLU C:328 , HOH C:620BINDING SITE FOR RESIDUE ZN C 504
22CC4SOFTWAREASP C:65 , MET C:330 , HOH C:621 , HOH C:630BINDING SITE FOR RESIDUE ZN C 505
23CC5SOFTWARELYS B:26 , ZN B:504 , ZN C:509BINDING SITE FOR RESIDUE ZN C 506
24CC6SOFTWAREZN B:504 , LYS C:26 , ZN C:509BINDING SITE FOR RESIDUE ZN C 507
25CC7SOFTWAREGLU B:310 , ZN B:507 , ZN B:508 , GLU C:310BINDING SITE FOR RESIDUE ZN C 508
26CC8SOFTWAREASP B:30 , LYS C:26 , ASP C:30 , ZN C:506 , ZN C:507BINDING SITE FOR RESIDUE ZN C 509
27CC9SOFTWAREHIS C:203BINDING SITE FOR RESIDUE ZN C 510
28DC1SOFTWAREHOH B:661 , ASP C:209 , SER C:211BINDING SITE FOR RESIDUE ZN C 511
29DC2SOFTWAREASP A:207 , HIS C:397 , GLN C:400 , GLN C:401BINDING SITE FOR RESIDUE ZN C 512
30DC3SOFTWAREHIS C:395BINDING SITE FOR RESIDUE ZN C 513

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FEC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FEC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FEC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FEC)

(-) Exons   (0, 0)

(no "Exon" information available for 4FEC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee.....hhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhh.....eeeee..hhhhhhhh........hhhhhh....hhhhh.ee..ee.eeeeeee..eeeee............hhhhhhhhhhh...eee.....hhhhhhhhhhhhh....eee..eee.......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh..eeeeeehhhhhhhhhhh...eeee............eeeeeeeee.....hhhhhhhhhhhh..hhhhhhhhhhhh...ee.hhhhhhhhh.hhhhhhhhhhhhh.ee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4fec A   1 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAMATLEKLMKAFESLKSFQQQQQQQHQHQHQQQ 402
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400  


Chain B from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....hhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhh....eeeee..hhhhhhhh........hhhhhh..hhhhhhh.ee..ee.eeeeeee..eeeee.........hhhhhhhhhhhhhh...eee.....hhhhhhhhhh....eeeeee..eeeeeeee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh..eeeeeehhhhhhhhhhh...eeee............eeeeeeeee.....hhhhhhhhhhhh..hhhhhhhhhhhh...ee.hhhhhhhhh.hhhhhhhhhhhhhhee....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fec B   1 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAMATLEKLMKAFESLKSFQQQQQQQHQHQHQQ 401
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400 


Chain C from PDB  Type:PROTEIN  Length:410
                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.....hhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhh......eeeeehhhhhhhhhh........hhhhhh....hhhhh.ee..ee.eeeeeee..eeeee............hhhhhhhhhhh...eee.....hhhhhhhhhhhh.....eee..eee.......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh..eeeeeehhhhhhhhhhh...eeee............eeeeeeeee.....hhhhhhhhhhhh..hhhhhhhhhhhh...ee.hhhhhhhhh.hhhhhhhhhhhhhhee.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fec C   1 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAMATLEKLMKAFESLKSFQQQQQQQHQHQHQQQQQQQQQQQ 410
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FEC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FEC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FEC)

(-) Gene Ontology  (55, 56)

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  4fec
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HD_HUMAN | P42858: 2d3x 2ld0 2ld2 3io4 3io6 3ior 3iot 3iou 3iov 3iow 3lrh 4fe8 4feb 4fed 4rav
        MALE_ECOLI | P0AEX9: 1a7l 1anf 1dmb 1ez9 1ezo 1ezp 1fqa 1fqb 1fqc 1fqd 1hsj 1iud 1jvx 1jvy 1jw4 1jw5 1lax 1lls 1mdp 1mdq 1mg1 1mh3 1mh4 1mpb 1mpc 1mpd 1n3w 1n3x 1nl5 1nmu 1omp 1peb 1r6z 1svx 1t0k 1y4c 1ytv 1ziu 1zjl 1zkb 1zmg 2d21 2h25 2klf 2mv0 2n44 2n45 2nvu 2obg 2ok2 2r6g 2v93 2vgq 2xz3 2zxt 3a3c 3c4m 3csb 3csg 3d4c 3d4g 3dm0 3ef7 3ehs 3eht 3ehu 3f5f 3g7v 3g7w 3h3g 3h4z 3hpi 3hst 3io4 3io6 3ior 3iot 3iou 3iov 3iow 3j9p 3kjt 3l2j 3lbs 3lc8 3mbp 3mp1 3mp6 3mp8 3mq9 3n94 3o3u 3oai 3osq 3osr 3pgf 3puv 3puw 3pux 3puy 3puz 3pv0 3py7 3q25 3q26 3q27 3q28 3q29 3rlf 3rum 3ser 3ses 3set 3seu 3sev 3sew 3sex 3sey 3vfj 3w15 3wai 3woa 4b3n 4bl8 4bl9 4bla 4blb 4bld 4dxb 4dxc 4edq 4egc 4exk 4fe8 4feb 4fed 4giz 4gli 4ifp 4ikm 4irl 4jbz 4jkm 4keg 4khz 4ki0 4kv3 4kyc 4kyd 4kye 4log 4mbp 4n4x 4ndz 4o2x 4ogm 4pe2 4qsz 4qvh 4r0y 4rg5 4rwf 4rwg 4tsm 4wjv 4wms 4wmt 4wmu 4wmv 4wmw 4wmx 4wrn 4wth 4wvh 4xa2 4xhs 4xr8 4xzs 4xzv 5aq9 5az6 5az7 5az8 5az9 5aza 5b3w 5b3x 5b3y 5b3z 5c7r 5cbn 5cfv 5dfm 5dis 5e24 5edu 5fio 5fsg 5gru 5gs2 5h7n 5h7q 5hz7 5hzv 5hzw 5i04 5i69 5ihj 5ii5 5iic 5iqz 5jj4 5jst 5jtq 5jtr 5ldf 5t03 5t05 5t0a 5ttd 5wpz 5wq6

(-) Related Entries Specified in the PDB File

3iov HUNTINGTIN-EX1 PROTEIN WITH 17 GLN RESIDUES
3io4 HUNTINGTIN-EX1 PROTEIN WITH 17 GLN RESIDUES
3io6 HUNTINGTIN-EX1 PROTEIN WITH 17 GLN RESIDUES
3ior HUNTINGTIN-EX1 PROTEIN WITH 17 GLN RESIDUES
3iot HUNTINGTIN-EX1 PROTEIN WITH 17 GLN RESIDUES
3iou HUNTINGTIN-EX1 PROTEIN WITH 17 GLN RESIDUES
4fe8 CRYSTAL STRUCTURE OF HTT36Q3H-EX1-X1-C1(ALPHA)
4feb HTT36Q3H-EX1-X1-C2(BETA)
4fed HTT36Q3H