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(-) Description

Title :  STRUCTURE OF TETRAHYMENA TELOMERASE P19 FUSED TO MBP
 
Authors :  H. Chan, D. Cascio, M. R. Sawaya, J. Feigon
Date :  27 Aug 15  (Deposition) - 28 Oct 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (3x)
Keywords :  Telomerase, P19, Cst Complex, Ten1, Ob-Fold, Oligonucleotide Binding Fold, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Jiang, H. Chan, D. D. Cash, E. J. Miracco, R. R. Ogorzalek Loo, H. E. Upton, D. Cascio, R. O'Brien Johnson, K. Collins, J. A. Loo, Z. H. Zhou, J. Feigon
Structure Of Tetrahymena Telomerase Reveals Previously Unknown Subunits, Functions, And Interactions.
Science V. 350 B4070 2015
PubMed-ID: 26472759  |  Reference-DOI: 10.1126/SCIENCE.AAB4070

(-) Compounds

Molecule 1 - MALTOSE-BINDING PERIPLASMIC PROTEIN,TELOMERASE-ASSOCIATED PROTEIN 19
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET46
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MALE, TAP19
    Organism Scientific: ESCHERICHIA COLI, TETRAHYMENA THERMOPHILA
    Organism Taxid: 562, 5911
    Synonym: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric Unit (3, 18)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MAL2Ligand/IonMALTOSE
3SO415Ligand/IonSULFATE ION
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MAL1Ligand/IonMALTOSE
3SO45Ligand/IonSULFATE ION
Biological Unit 2 (2, 11)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MAL1Ligand/IonMALTOSE
3SO410Ligand/IonSULFATE ION
Biological Unit 3 (3, 54)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MAL6Ligand/IonMALTOSE
3SO445Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:15 , TRP A:62 , ALA A:63 , ASP A:65 , ARG A:66 , GLU A:111 , GLU A:153 , PRO A:154 , TYR A:155 , TRP A:340 , ARG A:344 , HOH A:713 , HOH A:730binding site for residue MAL A 601
02AC2SOFTWAREASN A:12 , ASP A:41 , LYS A:42 , SO4 A:603 , HOH A:725binding site for residue SO4 A 602
03AC3SOFTWARELYS A:42 , ASN A:150 , GLU A:153 , ASP A:209 , TYR A:210 , SO4 A:602 , HOH A:702binding site for residue SO4 A 603
04AC4SOFTWARETHR A:385 , ASP A:386 , LYS A:387 , GLN A:470binding site for residue SO4 A 604
05AC5SOFTWARELYS A:382 , ARG A:408 , MET A:517 , TYR B:99 , GLN B:335binding site for residue SO4 A 605
06AC6SOFTWARETYR A:17 , ASN A:18binding site for residue SO4 A 606
07AC7SOFTWAREPHE A:443 , HIS A:472 , GLN A:473 , ASP A:505 , LEU A:507binding site for residue GOL A 607
08AC8SOFTWARELYS B:15 , TRP B:62 , ALA B:63 , ASP B:65 , ARG B:66 , GLU B:111 , GLU B:153 , PRO B:154 , TYR B:155 , TRP B:340 , ARG B:344 , HOH B:702 , HOH B:732binding site for residue MAL B 601
09AC9SOFTWARETYR A:99 , ASN A:100 , PRO A:334 , GLN A:335 , LYS B:382 , ARG B:408 , MET B:517binding site for residue SO4 B 602
10AD1SOFTWAREGLY A:101 , ASN B:496 , HIS B:513binding site for residue SO4 B 603
11AD2SOFTWAREASN A:496 , HIS A:512 , HIS A:513 , LYS B:102binding site for residue SO4 B 604
12AD3SOFTWAREASP B:82 , LYS B:83binding site for residue SO4 B 605
13AD4SOFTWAREPRO B:40 , ASP B:41 , LYS B:46binding site for residue SO4 B 606
14AD5SOFTWARETHR B:385 , ASP B:386 , LYS B:387binding site for residue SO4 B 607
15AD6SOFTWARETYR B:17 , ASN B:18binding site for residue SO4 B 608
16AD7SOFTWARELYS B:189 , THR B:356 , ASP B:358binding site for residue SO4 B 609
17AD8SOFTWARESER B:447 , TYR B:466 , LYS B:468binding site for residue SO4 B 610
18AD9SOFTWAREGLU B:214 , ASN B:234 , LYS B:297binding site for residue SO4 B 611

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DFM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DFM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DFM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DFM)

(-) Exons   (0, 0)

(no "Exon" information available for 5DFM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:509
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....hhhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhhh.....eeeee..hhhhhhhh........hhhhhh..hhhhhhhhee..ee..eeeeee..eeeee.........hhhhhhhhhhhhh........hhhhhhhhhhhh..eeeeee..eeeeeeee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh....eeeehhhhhhhhhhhh..eeee...ee..ee...eeeeeeeee.....hhhhhhhhhhhh..hhhhhhhhhhhh...ee.hhhhhhhhh.hhhhhhhhhhhhhhee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...eee..eee..hhhhhhhhhh..........eeeeeeeeeeeeehhhhhhhhhhh.....hhhhhhhhhhhhhh..eeeeee..eeeeee....ee........eeeeeeeeee.hhh.eeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dfm A   1 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAMQQPKRNFDLYKLITDKQIDFQVADLIQDEQSSFVSVRIYGQFKCFVPKSTIQEQLDKIKNLKELAKNKIFKFLSEYNYYGYFKVQQHQFILNLENAQREASLAVDDFYFINGRIYKTNHDILILQAHHVYQMQKPTLQLLQA 527
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|      154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       436       446   ||  468       478       488       498       508       518         
                                                                                                                                                                     140|                                                                                                                                                                                                                                                                                            432|            450|                                                                
                                                                                                                                                                      145                                                                                                                                                                                                                                                                                             435             463                                                                


Chain B from PDB  Type:PROTEIN  Length:506
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....hhhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhhh.....eeeee..hhhhhhhh........hhhhhh..hhhhhhhhee..ee..eeeeee..eeeee.........hhhhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eeeeee..eeeeeeee..hhhhhhhhhhhhhhh.........hhhhhhhhhhh..eeeeeehhhhhhhhhhhh..eeee...ee..ee...eeeeeeeee.....hhhhhhhhhhhh..hhhhhhhhhhhh...ee.hhhhhhhhh.hhhhhhhhhhhhhhee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...eee..eee..hhhhhhhhhh..........eeeeeeeeeeee.hhhhhhhhhhh.hhhhhhhhhhhhhhh...eeeeee..eeeeee....ee........eeeeeeeeee.hhh.eeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dfm B   1 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAMQQPKRNFDLYKLITDKQIDFQVADLIQDEQSSFVSVRIYGQFKCFVPKSTIQEQLDKSKELAKNKIFKFLSEYNDYYGYFKVQQHQFILNLENAQREASLAVDDFYFINGRIYKTNHDILILQAHHVYQMQKPTL 522
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       435       445    || 466       476       486       496       506       516      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                     428|             450|                                                            
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      434              462
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DFM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DFM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DFM)

(-) Gene Ontology  (16, 22)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        D2CVN7_TETTH | D2CVN7: 5dof 5doi
        MALE_ECO57 | P0AEY0: 1a7l 1anf 1dmb 1ez9 1ezo 1ezp 1fqa 1fqb 1fqc 1fqd 1hsj 1iud 1jvx 1jvy 1jw4 1jw5 1lax 1lls 1mdp 1mdq 1mg1 1mh3 1mh4 1mpb 1mpc 1mpd 1n3w 1n3x 1nl5 1nmu 1omp 1peb 1r6z 1svx 1t0k 1y4c 1ytv 1ziu 1zjl 1zkb 1zmg 2v93 3io4 3io6 3mbp 3osq 3osr 3vd8 4feb 4mbp 4my2 4wgi 4wrn 4wth 4wvg 4wvh 4wvi 4wvj 4xa2 4xai 4xaj 4xhs 4ys9 5bmy 5c7r 5cl1 5e24 5e7u 5edu 5fio 5ii4 5jj4 5jon 5jtq 5jtr 5k94 5ldf 5lof 5t03 5t05 5t0a 5ttd
        MALE_ECOLI | P0AEX9: 1a7l 1anf 1dmb 1ez9 1ezo 1ezp 1fqa 1fqb 1fqc 1fqd 1hsj 1iud 1jvx 1jvy 1jw4 1jw5 1lax 1lls 1mdp 1mdq 1mg1 1mh3 1mh4 1mpb 1mpc 1mpd 1n3w 1n3x 1nl5 1nmu 1omp 1peb 1r6z 1svx 1t0k 1y4c 1ytv 1ziu 1zjl 1zkb 1zmg 2d21 2h25 2klf 2mv0 2n44 2n45 2nvu 2obg 2ok2 2r6g 2v93 2vgq 2xz3 2zxt 3a3c 3c4m 3csb 3csg 3d4c 3d4g 3dm0 3ef7 3ehs 3eht 3ehu 3f5f 3g7v 3g7w 3h3g 3h4z 3hpi 3hst 3io4 3io6 3ior 3iot 3iou 3iov 3iow 3j9p 3kjt 3l2j 3lbs 3lc8 3mbp 3mp1 3mp6 3mp8 3mq9 3n94 3o3u 3oai 3osq 3osr 3pgf 3puv 3puw 3pux 3puy 3puz 3pv0 3py7 3q25 3q26 3q27 3q28 3q29 3rlf 3rum 3ser 3ses 3set 3seu 3sev 3sew 3sex 3sey 3vfj 3w15 3wai 3woa 4b3n 4bl8 4bl9 4bla 4blb 4bld 4dxb 4dxc 4edq 4egc 4exk 4fe8 4feb 4fec 4fed 4giz 4gli 4ifp 4ikm 4irl 4jbz 4jkm 4keg 4khz 4ki0 4kv3 4kyc 4kyd 4kye 4log 4mbp 4n4x 4ndz 4o2x 4ogm 4pe2 4qsz 4qvh 4r0y 4rg5 4rwf 4rwg 4tsm 4wjv 4wms 4wmt 4wmu 4wmv 4wmw 4wmx 4wrn 4wth 4wvh 4xa2 4xhs 4xr8 4xzs 4xzv 5aq9 5az6 5az7 5az8 5az9 5aza 5b3w 5b3x 5b3y 5b3z 5c7r 5cbn 5cfv 5dis 5e24 5edu 5fio 5fsg 5gru 5gs2 5h7n 5h7q 5hz7 5hzv 5hzw 5i04 5i69 5ihj 5ii5 5iic 5iqz 5jj4 5jst 5jtq 5jtr 5ldf 5t03 5t05 5t0a 5ttd 5wpz 5wq6

(-) Related Entries Specified in the PDB File

5dfn