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(-) Description

Title :  CRYSTAL STRUCTURE OF SGF29 TUDOR DOMAIN
 
Authors :  J. Li, M. Wu, J. Ruan, J. Zang
Date :  26 Apr 10  (Deposition) - 04 May 11  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.92
Chains :  Asym./Biol. Unit :  A
Keywords :  Histone, Tudor Domain, Saga, Histone Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Bian, C. Xu, J. Ruan, K. K. Lee, T. L. Burke, W. Tempel, D. Barsyte, J. Li, M. Wu, B. O. Zhou, B. E. Fleharty, A. Paulson, A. Allali-Hassani, J. Q. Zhou, G. Mer, P. A. Grant, J. L. Workman, J. Zang, J. Min
Sgf29 Binds Histone H3K4Me2/3 And Is Required For Saga Complex Recruitment And Histone H3 Acetylation
Embo J. V. 30 2829 2011
PubMed-ID: 21685874  |  Reference-DOI: 10.1038/EMBOJ.2011.193

(-) Compounds

Molecule 1 - MALTOSE-BINDING PERIPLASMIC PROTEIN,LINKER,SAGA-ASSOCIATED FACTOR 29
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET23B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MALE, SGF29
    Organism Scientific: ESCHERICHIA COLI K-12, UNIDENTIFIED, SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid: 83333, 32644, 559292
    Other Details: CHIMERA OF MALTOSE-BINDING PERIPLASMIC PROTEIN, SAGA- ASSOCIATED FACTOR 29
    Strain: K12, S288C
    Synonym: MBP,SGF29

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 25)

Asymmetric/Biological Unit (6, 25)
No.NameCountTypeFull Name
14BZ1Ligand/Ion4-(HYDROXYMETHYL)BENZAMIDINE
2ACY3Ligand/IonACETIC ACID
3GOL9Ligand/IonGLYCEROL
4MAL1Ligand/IonMALTOSE
5NA5Ligand/IonSODIUM ION
6SO46Ligand/IonSULFATE ION

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH A:102 , HOH A:103 , HOH A:110 , ASP A:752 , LYS A:753 , TRP A:800 , ALA A:801 , ASP A:803 , ARG A:804 , GLU A:849 , GLU A:891 , PRO A:892 , TYR A:893 , PHE A:894 , TRP A:968 , TRP A:1078 , NA A:1269 , HOH A:1283BINDING SITE FOR RESIDUE MAL A 1
02AC2SOFTWAREGOL A:7 , HOH A:50 , GLU A:760 , VAL A:761 , LYS A:764 , GLU A:1026 , ALA A:1030BINDING SITE FOR RESIDUE GOL A 1260
03AC3SOFTWAREHOH A:169 , HOH A:262 , HOH A:319 , HIS A:802 , ALA A:834 , TYR A:914 , ILE A:1067 , MET A:1068 , PRO A:1069 , ASN A:1070BINDING SITE FOR RESIDUE GOL A 2
04AC4SOFTWAREHOH A:75 , HOH A:260 , LYS A:739 , LYS A:772 , THR A:791BINDING SITE FOR RESIDUE GOL A 3
05AC5SOFTWARELYS A:1051 , GLY A:1170 , ASN A:1171 , SER A:1172BINDING SITE FOR RESIDUE GOL A 4
06AC6SOFTWAREHOH A:301 , GLN A:1103 , THR A:1104BINDING SITE FOR RESIDUE GOL A 5
07AC7SOFTWARETYR A:755 , ASN A:756BINDING SITE FOR RESIDUE GOL A 6
08AC8SOFTWAREHOH A:50 , HOH A:185 , HOH A:403 , LYS A:764 , ASN A:1020 , GLU A:1026 , GOL A:1260BINDING SITE FOR RESIDUE GOL A 7
09AC9SOFTWAREASN A:923 , ALA A:924BINDING SITE FOR RESIDUE GOL A 8
10BC1SOFTWAREHOH A:434 , TYR A:914 , GLU A:1066 , ILE A:1067BINDING SITE FOR RESIDUE GOL A 9
11BC2SOFTWAREHOH A:296 , HOH A:403 , GLU A:1016 , ASN A:1020 , ARG A:1158 , ASN A:1179 , NA A:1270BINDING SITE FOR RESIDUE SO4 A 1261
12BC3SOFTWAREHOH A:179 , HOH A:270 , PRO A:778 , ASP A:779 , LYS A:784BINDING SITE FOR RESIDUE SO4 A 1262
13BC4SOFTWAREHOH A:129 , LYS A:780 , ARG A:1082 , PRO A:1121BINDING SITE FOR RESIDUE SO4 A 1263
14BC5SOFTWAREHOH A:84 , ASP A:820 , LYS A:821BINDING SITE FOR RESIDUE SO4 A 1264
15BC6SOFTWAREHOH A:82 , HOH A:206 , ASN A:888 , GLN A:890 , GLU A:891 , ASP A:947 , TYR A:948BINDING SITE FOR RESIDUE SO4 A 1265
16BC7SOFTWAREHOH A:41 , HOH A:45 , HOH A:207 , HOH A:306 , HOH A:378 , SER A:1008 , PRO A:1009 , ASN A:1010 , LYS A:1011 , GLU A:1012BINDING SITE FOR RESIDUE SO4 A 1266
17BC8SOFTWAREHOH A:261 , HOH A:266 , HOH A:348 , TRP A:896BINDING SITE FOR RESIDUE NA A 1267
18BC9SOFTWAREHOH A:120 , HOH A:337 , ASN A:979BINDING SITE FOR RESIDUE NA A 1268
19CC1SOFTWAREMAL A:1 , HOH A:102 , GLU A:782 , GLU A:891BINDING SITE FOR RESIDUE NA A 1269
20CC2SOFTWAREGLU A:1016 , ARG A:1158 , SO4 A:1261BINDING SITE FOR RESIDUE NA A 1270
21CC3SOFTWAREHOH A:338 , ALA A:879 , ALA A:1214 , ILE A:1215 , ASP A:1230BINDING SITE FOR RESIDUE NA A 1271
22CC4SOFTWARELYS A:1220 , ARG A:1221BINDING SITE FOR RESIDUE ACY A 1272
23CC5SOFTWAREGLU A:876 , PHE A:1229 , GLY A:1231 , GLU A:1232 , GLU A:1234 , VAL A:1235BINDING SITE FOR RESIDUE ACY A 1273
24CC6SOFTWAREHOH A:159 , HOH A:408 , HOH A:410 , ASP A:779 , LYS A:780BINDING SITE FOR RESIDUE ACY A 1274
25CC7SOFTWAREHOH A:293 , LYS A:1043 , GLU A:1047 , ARG A:1092 , GLN A:1146 , ARG A:1204 , ARG A:1244 , LEU A:1245BINDING SITE FOR RESIDUE 4BZ A 1275

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MP8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:1123 -Pro A:1124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MP8)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SGF29_CPS51518 SGF29 C-terminal domain profile.SGF29_YEAST121-255  1A:1121-1250
2SBP_BACTERIAL_1PS01037 Bacterial extracellular solute-binding proteins, family 1 signature.MALE_ECOLI133-150  1A:845-862

(-) Exons   (0, 0)

(no "Exon" information available for 3MP8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:513
 aligned with MALE_ECOLI | P0AEX9 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:513
                                                                                                                                                                                                                                                                                                                                                                                                            396                                                                                                                                              
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395|        -         -         -         -         -         -         -         -         -         -         -         -         -         -   
          MALE_ECOLI     26 AKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITK----------------------------------------------------------------------------------------------------------------------------------------------    -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----------SBP_bac_1-3mp8A01 A:749-1029                                                                                                                                                                                                                                                             ------------------------------------------------------------------------------------------------DUF1325-3mp8A02 A:1126-1250                                                                                                   Pfam domains
         Sec.struct. author .......eeee.....hhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhh......eeeee..hhhhhhhh........hhhhhh..hhhhhhhhee..ee..eeeeee..eeeee.........hhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh..eeeeee..eeeeeeee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh..eeeeeehhhhhhhhhhhh..eeee............eeeeeeeee.....hhhhhhhhhhhh..hhhhhhhhhhhh...ee.hhhhhhhhh.hhhhhhhhhhhhhhee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.......................eeee..........eeeeeeeeee....eeeeee..........eeeeee...eee..............eeeee.....eeeeeeeeee.....eeeee.........eeehhh.eee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------SBP_BACTERIAL_1   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3mp8 A  738 MKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALAAAQTNAAAEFGSSYWTSEYNPNAPILVGSEVAYKPRRGSADGEWIQCEVLKVVADGTRFEVRDPEPDELGNSGKVYKCNRKELLLIPPGFPTKNYPPGTKVLARYPETTTFYPAIVIGTKRDGTCRLRFDGEEEVDKETEVTRRLVLPSP 1250
                                   747       757       767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247   


Chain A from PDB  Type:PROTEIN  Length:513
 aligned with SGF29_YEAST | P25554 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:513
                                                                                                                                                                                                                                                                                      51                                                                                                    104                                                                                                                                                              
                                                                                               1  4                       5  8            9        19         20          32                                               33  37                   38        48                    49 |                         52                70 71             86     87     94            95   101 102 |          105                                                                                                                                                 
                                     -         -         -         -         -         -       | 3|        -         -    |  | -         -|       18|        - |      28   |     -         -         -         -         -  |   |  -         -       |40       | -         -        49 |       -         -        53        63      | 71        81    |    - |      |-         -  |     |-  | |    -       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247   
         SGF29_YEAST      - -------------------------------------------------------------------MDGY-----------------------WDVV------------VSSLQDIYNAN----------EVIPFDDELQTKK------------------------------------------------LNFLN--------------------MSKDQLQLHLN---------------------TFQ--------------------------EHMENVNRVHRILDNVRSN--LSLMLNQSREEKSEEN------TEDAEEGE-------------GTRMALS---QGK------------KAVGKVGRSYWTSEYNPNAPILVGSEVAYKPRRGSADGEWIQCEVLKVVADGTRFEVRDPEPDELGNSGKVYKCNRKELLLIPPGFPTKNYPPGTKVLARYPETTTFYPAIVIGTKRDGTCRLRFDGEEEVDKETEVTRRLVLPSP  250
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----------SBP_bac_1-3mp8A01 A:749-1029                                                                                                                                                                                                                                                             ------------------------------------------------------------------------------------------------DUF1325-3mp8A02 A:1126-1250                                                                                                   Pfam domains
         Sec.struct. author .......eeee.....hhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhh......eeeee..hhhhhhhh........hhhhhh..hhhhhhhhee..ee..eeeeee..eeeee.........hhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh..eeeeee..eeeeeeee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh..eeeeeehhhhhhhhhhhh..eeee............eeeeeeeee.....hhhhhhhhhhhh..hhhhhhhhhhhh...ee.hhhhhhhhh.hhhhhhhhhhhhhhee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.......................eeee..........eeeeeeeeee....eeeeee..........eeeeee...eee..............eeeee.....eeeeeeeeee.....eeeee.........eeehhh.eee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGF29_C  PDB: A:1121-1250 UniProt: 121-255                                                                                         PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3mp8 A  738 MKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALAAAQTNAAAEFGSSYWTSEYNPNAPILVGSEVAYKPRRGSADGEWIQCEVLKVVADGTRFEVRDPEPDELGNSGKVYKCNRKELLLIPPGFPTKNYPPGTKVLARYPETTTFYPAIVIGTKRDGTCRLRFDGEEEVDKETEVTRRLVLPSP 1250
                                   747       757       767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MP8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MP8)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: PBP (391)
(-)
Clan: Tudor (88)

(-) Gene Ontology  (30, 31)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (SGF29_YEAST | P25554)
molecular function
    GO:0035064    methylated histone binding    Interacting selectively and non-covalently with a histone in which a residue has been modified by methylation. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0001135    transcription factor activity, RNA polymerase II transcription factor recruiting    The function of binding to an RNA polymerase II (RNAP II) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP II.
biological process
    GO:0034629    cellular protein complex localization    A protein complex localization process that takes place at the cellular level; as a result, a protein complex is transported to, or maintained in, a specific location within a cell.
    GO:0034613    cellular protein localization    Any process in which a protein is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell.
    GO:0070868    heterochromatin organization involved in chromatin silencing    Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic heterochromatin and contributes to chromatin silencing.
    GO:0044154    histone H3-K14 acetylation    The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 14 of the histone.
    GO:0043971    histone H3-K18 acetylation    The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 18 of the histone.
    GO:0043970    histone H3-K9 acetylation    The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 9 of the histone.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005671    Ada2/Gcn5/Ada3 transcription activator complex    A multiprotein complex that possesses histone acetyltransferase and is involved in regulation of transcription. Contains either GCN5 or PCAF in a mutually exclusive manner. The budding yeast complex includes Gcn5p, two proteins of the Ada family, and two TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins. Both ATAC- or SAGA (see GO:0000124, SAGA complex) are involved in the acetylation of histone H3K9 and K14 residues.
    GO:0000124    SAGA complex    A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain A   (MALE_ECOLI | P0AEX9)
molecular function
    GO:1901982    maltose binding    Interacting selectively and non-covalently with maltose.
    GO:0005363    maltose transmembrane transporter activity    Enables the transfer of maltose from one side of the membrane to the other. Maltose is the disaccharide 4-O-alpha-D-glucopyranosyl-D-glucopyranose, an intermediate in the enzymatic breakdown of glycogen and starch.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0008643    carbohydrate transport    The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
    GO:0060326    cell chemotaxis    The directed movement of a motile cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0034289    detection of maltose stimulus    The series of events in which a maltose stimulus is received by a cell and converted into a molecular signal.
    GO:0042956    maltodextrin transport    The directed movement of maltodextrin, any polysaccharide of glucose residues in beta-(1,4) linkage, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015768    maltose transport    The directed movement of maltose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Maltose is the disaccharide 4-O-alpha-D-glucopyranosyl-D-glucopyranose, an intermediate in the catabolism of glycogen and starch.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0043190    ATP-binding cassette (ABC) transporter complex    A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter.
    GO:0055052    ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing    A complex for the transport of metabolites into the cell, consisting of 5 subunits: two ATP-binding subunits, two membrane spanning subunits, and one substrate-binding subunit. In organisms with two membranes, the substrate-binding protein moves freely in the periplasmic space and joins the other subunits only when bound with substrate. In organisms with only one membrane the substrate-binding protein is tethered to the cytoplasmic membrane and associated with the other subunits. Transport of the substrate across the membrane is driven by the hydrolysis of ATP.
    GO:1990060    maltose transport complex    Protein complex facilitating ATP-dependent maltose transport through inner cell membrane (periplasm to cytoplasm) in Gram-negative bacteria. In E. coli the system is composed of a periplasmic maltose-binding protein (MBP), two integral membrane proteins, MalF and MalG, and two copies of the cytoplasmic ATP-binding cassette MalK.
    GO:0030288    outer membrane-bounded periplasmic space    The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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  Cis Peptide Bonds
    Ala A:1123 - Pro A:1124   [ RasMol ]  
 

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  3mp8
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  SGF29_YEAST | P25554
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MALE_ECOLI | P0AEX9: 1a7l 1anf 1dmb 1ez9 1ezo 1ezp 1fqa 1fqb 1fqc 1fqd 1hsj 1iud 1jvx 1jvy 1jw4 1jw5 1lax 1lls 1mdp 1mdq 1mg1 1mh3 1mh4 1mpb 1mpc 1mpd 1n3w 1n3x 1nl5 1nmu 1omp 1peb 1r6z 1svx 1t0k 1y4c 1ytv 1ziu 1zjl 1zkb 1zmg 2d21 2h25 2klf 2mv0 2n44 2n45 2nvu 2obg 2ok2 2r6g 2v93 2vgq 2xz3 2zxt 3a3c 3c4m 3csb 3csg 3d4c 3d4g 3dm0 3ef7 3ehs 3eht 3ehu 3f5f 3g7v 3g7w 3h3g 3h4z 3hpi 3hst 3io4 3io6 3ior 3iot 3iou 3iov 3iow 3j9p 3kjt 3l2j 3lbs 3lc8 3mbp 3mp1 3mp6 3mq9 3n94 3o3u 3oai 3osq 3osr 3pgf 3puv 3puw 3pux 3puy 3puz 3pv0 3py7 3q25 3q26 3q27 3q28 3q29 3rlf 3rum 3ser 3ses 3set 3seu 3sev 3sew 3sex 3sey 3vfj 3w15 3wai 3woa 4b3n 4bl8 4bl9 4bla 4blb 4bld 4dxb 4dxc 4edq 4egc 4exk 4fe8 4feb 4fec 4fed 4giz 4gli 4ifp 4ikm 4irl 4jbz 4jkm 4keg 4khz 4ki0 4kv3 4kyc 4kyd 4kye 4log 4mbp 4n4x 4ndz 4o2x 4ogm 4pe2 4qsz 4qvh 4r0y 4rg5 4rwf 4rwg 4tsm 4wjv 4wms 4wmt 4wmu 4wmv 4wmw 4wmx 4wrn 4wth 4wvh 4xa2 4xhs 4xr8 4xzs 4xzv 5aq9 5az6 5az7 5az8 5az9 5aza 5b3w 5b3x 5b3y 5b3z 5c7r 5cbn 5cfv 5dfm 5dis 5e24 5edu 5fio 5fsg 5gru 5gs2 5h7n 5h7q 5hz7 5hzv 5hzw 5i04 5i69 5ihj 5ii5 5iic 5iqz 5jj4 5jst 5jtq 5jtr 5ldf 5t03 5t05 5t0a 5ttd 5wpz 5wq6
        SGF29_YEAST | P25554: 3mp1 3mp6

(-) Related Entries Specified in the PDB File

3mp1 3mp6