4WMR - JenaLib

Title :   STRUCTURE OF MCL1 BOUND TO BRD INHIBITOR LIGAND 1 AT 1.7A

Authors :   M. C. Clifton, T. E. Edwards

Date :   09 Oct 14 (Deposition) - 06 May 15 (Release) - 06 May 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)
Biol. Unit 3: A  (2x)

Keywords :   Apoptosis, Protein-Protein Interaction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. C. Clifton, D. M. Dranow, A. Leed, B. Fulroth, J. W. Fairman, J. Abendroth, K. A. Atkins, E. Wallace, D. Fan, G. Xu, Z. J. Ni, D. Daniels, J. Van Drie, G. Wei, A. B. Burgin, T. R. Golub, B. K. Hubbard M. H. Serrano-Wu
A Maltose-Binding Protein Fusion Construct Yields A Robust Crystallography Platform For Mcl1.
Plos One V. 10 25010 2015
PubMed-ID: 25909780 | Reference-DOI: 10.1371/JOURNAL.PONE.0125010

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	865	1	Ligand/Ion	7-[2-(1H-IMIDAZOL-1-YL)-4-METHYLPYRIDIN-3-YL]-3-[3-(NAPHTHALEN-1-YLOXY)PROPYL]-1-[2-OXO-2-(PIPERAZIN-1-YL)ETHYL]-1H-INDOLE-2-CARBOXYLIC ACID
2	POP	2	Ligand/Ion	PYROPHOSPHATE 2-
3	ZN	3	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	865	1	Ligand/Ion	7-[2-(1H-IMIDAZOL-1-YL)-4-METHYLPYRIDIN-3-YL]-3-[3-(NAPHTHALEN-1-YLOXY)PROPYL]-1-[2-OXO-2-(PIPERAZIN-1-YL)ETHYL]-1H-INDOLE-2-CARBOXYLIC ACID
2	POP	2	Ligand/Ion	PYROPHOSPHATE 2-
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	865	2	Ligand/Ion	7-[2-(1H-IMIDAZOL-1-YL)-4-METHYLPYRIDIN-3-YL]-3-[3-(NAPHTHALEN-1-YLOXY)PROPYL]-1-[2-OXO-2-(PIPERAZIN-1-YL)ETHYL]-1H-INDOLE-2-CARBOXYLIC ACID
2	POP	4	Ligand/Ion	PYROPHOSPHATE 2-
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (2, 6)

No.	Name	Count	Type	Full Name
1	865	2	Ligand/Ion	7-[2-(1H-IMIDAZOL-1-YL)-4-METHYLPYRIDIN-3-YL]-3-[3-(NAPHTHALEN-1-YLOXY)PROPYL]-1-[2-OXO-2-(PIPERAZIN-1-YL)ETHYL]-1H-INDOLE-2-CARBOXYLIC ACID
2	POP	4	Ligand/Ion	PYROPHOSPHATE 2-
3	ZN	-1	Ligand/Ion	ZINC ION

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:224 , 865 A:404 , POP A:405	binding site for residue ZN A 401
2	AC2	SOFTWARE	HIS A:252 , ASP A:256 , POP A:406	binding site for residue ZN A 402
3	AC3	SOFTWARE	POP A:405	binding site for residue ZN A 403
4	AC4	SOFTWARE	HIS A:224 , THR A:226 , ALA A:227 , LEU A:246 , MET A:250 , VAL A:253 , ARG A:263 , THR A:266 , LEU A:267 , PHE A:270 , GLY A:271 , ZN A:401 , POP A:405 , HOH A:560 , HOH A:584 , HOH A:587 , HOH A:601	binding site for residue 865 A 404
5	AC5	SOFTWARE	HIS A:224 , ZN A:401 , ZN A:403 , 865 A:404 , HOH A:512 , HOH A:518 , HOH A:560 , HOH A:601	binding site for residue POP A 405
6	AC6	SOFTWARE	SER A:172 , HIS A:252 , ASP A:256 , ARG A:300 , ZN A:402 , HOH A:540 , HOH A:617	binding site for residue POP A 406

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wmr A 172 SELYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHV 321
                                   181       191       201       211       221       231       241       251       261       271       281       291       301       311       321

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (32, 32)

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	Sites
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