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Biol. Unit 1
Info
Asym.Unit (300 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NATIVE TTHA0252 FROM THERMUS THERMOPHILUS HB8
Authors
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui
Date
:
22 Jul 09 (Deposition) - 28 Jul 10 (Release) - 28 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Metallo Beta Lactamase Fold, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of Native Ttha0252 From Thermus Thermophilus Hb8
To Be Published
[
close entry info
]
Hetero Components
(2, 29)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2bg: SULFATE ION (SO4bg)
2bh: SULFATE ION (SO4bh)
2bi: SULFATE ION (SO4bi)
2bj: SULFATE ION (SO4bj)
2bk: SULFATE ION (SO4bk)
2bl: SULFATE ION (SO4bl)
2bm: SULFATE ION (SO4bm)
2bn: SULFATE ION (SO4bn)
2bo: SULFATE ION (SO4bo)
2bp: SULFATE ION (SO4bp)
2bq: SULFATE ION (SO4bq)
2br: SULFATE ION (SO4br)
2bs: SULFATE ION (SO4bs)
2bt: SULFATE ION (SO4bt)
2bu: SULFATE ION (SO4bu)
2bv: SULFATE ION (SO4bv)
2bw: SULFATE ION (SO4bw)
2bx: SULFATE ION (SO4bx)
2by: SULFATE ION (SO4by)
2bz: SULFATE ION (SO4bz)
2c: SULFATE ION (SO4c)
2ca: SULFATE ION (SO4ca)
2cb: SULFATE ION (SO4cb)
2cc: SULFATE ION (SO4cc)
2cd: SULFATE ION (SO4cd)
2ce: SULFATE ION (SO4ce)
2cf: SULFATE ION (SO4cf)
2cg: SULFATE ION (SO4cg)
2ch: SULFATE ION (SO4ch)
2ci: SULFATE ION (SO4ci)
2cj: SULFATE ION (SO4cj)
2ck: SULFATE ION (SO4ck)
2cl: SULFATE ION (SO4cl)
2cm: SULFATE ION (SO4cm)
2cn: SULFATE ION (SO4cn)
2co: SULFATE ION (SO4co)
2cp: SULFATE ION (SO4cp)
2cq: SULFATE ION (SO4cq)
2cr: SULFATE ION (SO4cr)
2cs: SULFATE ION (SO4cs)
2ct: SULFATE ION (SO4ct)
2cu: SULFATE ION (SO4cu)
2cv: SULFATE ION (SO4cv)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
1
Ligand/Ion
CITRATE ANION
2
SO4
28
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(41, 41)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC6 (SOFTWARE)
33: EC2 (SOFTWARE)
34: EC8 (SOFTWARE)
35: FC7 (SOFTWARE)
36: GC6 (SOFTWARE)
37: GC8 (SOFTWARE)
38: GC9 (SOFTWARE)
39: HC6 (SOFTWARE)
40: JC3 (SOFTWARE)
41: KC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:77 , HOH A:475
BINDING SITE FOR RESIDUE SO4 A 432
02
AC2
SOFTWARE
ARG A:24
BINDING SITE FOR RESIDUE SO4 A 433
03
AC3
SOFTWARE
ARG A:359 , ARG C:359 , GLU C:364
BINDING SITE FOR RESIDUE SO4 A 434
04
AC4
SOFTWARE
ARG A:368
BINDING SITE FOR RESIDUE SO4 A 435
05
AC5
SOFTWARE
ARG A:73 , HOH A:492
BINDING SITE FOR RESIDUE SO4 A 436
06
AC6
SOFTWARE
HIS A:61 , ASP A:63 , HIS A:141 , ASP A:162 , HIS A:380 , HIS A:400 , ZN A:461 , ZN A:462
BINDING SITE FOR RESIDUE SO4 A 437
07
AC7
SOFTWARE
GLU A:199 , ARG A:202 , SER D:330
BINDING SITE FOR RESIDUE SO4 A 438
08
AC8
SOFTWARE
SER A:330 , PRO A:366 , ARG A:368
BINDING SITE FOR RESIDUE SO4 A 439
09
AC9
SOFTWARE
VAL A:371 , HIS A:372 , THR A:373 , HOH A:553
BINDING SITE FOR RESIDUE SO4 A 440
10
BC1
SOFTWARE
ARG A:24 , LEU A:129 , GLY A:130
BINDING SITE FOR RESIDUE SO4 A 441
11
BC2
SOFTWARE
MET A:1 , ARG A:2 , HOH A:539
BINDING SITE FOR RESIDUE SO4 A 442
12
BC3
SOFTWARE
HIS A:61 , LEU A:142 , PHE A:223 , VAL A:225 , GLU A:226 , ARG A:227 , HOH A:593 , HOH A:649 , HOH A:676
BINDING SITE FOR RESIDUE SO4 A 443
13
BC4
SOFTWARE
ARG A:77 , GLU A:113 , HIS A:117 , HOH A:475
BINDING SITE FOR RESIDUE SO4 A 444
14
BC5
SOFTWARE
THR A:294 , ARG A:320 , HOH A:694
BINDING SITE FOR RESIDUE SO4 A 445
15
BC6
SOFTWARE
PRO A:243 , ARG A:244 , ARG B:302
BINDING SITE FOR RESIDUE SO4 A 446
16
BC7
SOFTWARE
THR A:222 , PHE A:223 , SER A:313 , GLY A:314 , HOH A:574 , HOH A:629
BINDING SITE FOR RESIDUE SO4 A 447
17
BC8
SOFTWARE
ARG A:359 , GLY A:362 , HOH A:665
BINDING SITE FOR RESIDUE SO4 A 448
18
BC9
SOFTWARE
TYR A:189 , ARG A:227 , GLY A:340 , TYR A:341 , SER A:378 , GLY A:379 , HOH A:642 , HOH A:648
BINDING SITE FOR RESIDUE SO4 A 449
19
CC1
SOFTWARE
ALA A:131 , LEU D:179
BINDING SITE FOR RESIDUE SO4 A 450
20
CC2
SOFTWARE
ARG A:84 , PRO A:120 , GLU A:122 , ARG A:266 , GLU D:270 , SO4 D:432
BINDING SITE FOR RESIDUE SO4 A 451
21
CC3
SOFTWARE
ARG A:2 , GLY A:428 , HOH A:547
BINDING SITE FOR RESIDUE SO4 A 452
22
CC4
SOFTWARE
ARG A:119
BINDING SITE FOR RESIDUE SO4 A 453
23
CC5
SOFTWARE
ARG A:84 , LEU A:88 , ARG A:263
BINDING SITE FOR RESIDUE SO4 A 454
24
CC6
SOFTWARE
LYS A:298 , HIS A:323 , LYS A:326 , HIS A:327 , HOH A:664
BINDING SITE FOR RESIDUE SO4 A 455
25
CC7
SOFTWARE
HIS A:293 , ARG B:284
BINDING SITE FOR RESIDUE SO4 A 456
26
CC8
SOFTWARE
HIS A:238 , HIS A:240 , ARG A:241 , ARG B:368
BINDING SITE FOR RESIDUE SO4 A 457
27
CC9
SOFTWARE
PRO A:172 , ASP A:173 , SER A:269 , GLU A:270 , HOH A:532 , HOH A:637 , ARG D:84
BINDING SITE FOR RESIDUE SO4 A 458
28
DC1
SOFTWARE
PRO A:304 , ARG A:333 , HOH A:586 , HOH A:647
BINDING SITE FOR RESIDUE SO4 A 459
29
DC2
SOFTWARE
PRO A:262 , ASN A:281 , ARG A:284 , HOH A:599
BINDING SITE FOR RESIDUE FLC A 460
30
DC3
SOFTWARE
ASP A:63 , HIS A:64 , ASP A:162 , HIS A:400 , SO4 A:437 , ZN A:462
BINDING SITE FOR RESIDUE ZN A 461
31
DC4
SOFTWARE
HIS A:59 , HIS A:61 , HIS A:141 , ASP A:162 , SO4 A:437 , ZN A:461
BINDING SITE FOR RESIDUE ZN A 462
32
DC6
SOFTWARE
PRO A:394 , ARG B:2 , PRO B:430
BINDING SITE FOR RESIDUE SO4 B 433
33
EC2
SOFTWARE
HIS A:240 , ARG A:241 , HIS B:327 , SER B:330
BINDING SITE FOR RESIDUE SO4 B 438
34
EC8
SOFTWARE
TYR A:248 , GLU A:289 , ALA A:296 , HOH A:515 , HOH A:603 , TYR B:248 , GLU B:289 , VAL B:291 , ALA B:296 , HOH B:466 , HOH B:527
BINDING SITE FOR RESIDUE SO4 B 444
35
FC7
SOFTWARE
ARG A:244 , HIS B:323 , LYS B:326 , HIS B:327 , HOH B:624
BINDING SITE FOR RESIDUE SO4 B 452
36
GC6
SOFTWARE
ARG A:155 , ARG B:155 , HOH B:555
BINDING SITE FOR RESIDUE SO4 B 460
37
GC8
SOFTWARE
ARG A:155 , ARG B:155 , HOH B:584
BINDING SITE FOR RESIDUE SO4 B 462
38
GC9
SOFTWARE
LEU A:407 , GLY A:410 , LYS A:411 , ALA A:414 , LEU B:407 , GLY B:410 , LYS B:411 , VAL B:420 , HOH B:598
BINDING SITE FOR RESIDUE FLC B 463
39
HC6
SOFTWARE
ARG A:73 , ARG C:424
BINDING SITE FOR RESIDUE SO4 C 435
40
JC3
SOFTWARE
GLY A:46 , PHE A:47 , HOH A:675 , GLY C:46 , PHE C:47 , SO4 C:454
BINDING SITE FOR RESIDUE SO4 C 450
41
KC1
SOFTWARE
SO4 A:451 , PRO D:172 , ASP D:173 , SER D:269 , GLU D:270 , HOH D:491
BINDING SITE FOR RESIDUE SO4 D 432
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ieka_ (A:)
1b: SCOP_d3iekb_ (B:)
1c: SCOP_d3iekc_ (C:)
1d: SCOP_d3iekd_ (D:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Putative RNA-degradation protein TTHA0252
(9)
Thermus thermophilus [TaxId: 274]
(9)
1a
d3ieka_
A:
1b
d3iekb_
B:
1c
d3iekc_
C:
1d
d3iekd_
D:
[
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]
CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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