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Biol. Unit 4
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Asym.Unit (300 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NATIVE TTHA0252 FROM THERMUS THERMOPHILUS HB8
Authors
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui
Date
:
22 Jul 09 (Deposition) - 28 Jul 10 (Release) - 28 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Metallo Beta Lactamase Fold, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of Native Ttha0252 From Thermus Thermophilus Hb8
To Be Published
[
close entry info
]
Hetero Components
(1, 18)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2bg: SULFATE ION (SO4bg)
2bh: SULFATE ION (SO4bh)
2bi: SULFATE ION (SO4bi)
2bj: SULFATE ION (SO4bj)
2bk: SULFATE ION (SO4bk)
2bl: SULFATE ION (SO4bl)
2bm: SULFATE ION (SO4bm)
2bn: SULFATE ION (SO4bn)
2bo: SULFATE ION (SO4bo)
2bp: SULFATE ION (SO4bp)
2bq: SULFATE ION (SO4bq)
2br: SULFATE ION (SO4br)
2bs: SULFATE ION (SO4bs)
2bt: SULFATE ION (SO4bt)
2bu: SULFATE ION (SO4bu)
2bv: SULFATE ION (SO4bv)
2bw: SULFATE ION (SO4bw)
2bx: SULFATE ION (SO4bx)
2by: SULFATE ION (SO4by)
2bz: SULFATE ION (SO4bz)
2c: SULFATE ION (SO4c)
2ca: SULFATE ION (SO4ca)
2cb: SULFATE ION (SO4cb)
2cc: SULFATE ION (SO4cc)
2cd: SULFATE ION (SO4cd)
2ce: SULFATE ION (SO4ce)
2cf: SULFATE ION (SO4cf)
2cg: SULFATE ION (SO4cg)
2ch: SULFATE ION (SO4ch)
2ci: SULFATE ION (SO4ci)
2cj: SULFATE ION (SO4cj)
2ck: SULFATE ION (SO4ck)
2cl: SULFATE ION (SO4cl)
2cm: SULFATE ION (SO4cm)
2cn: SULFATE ION (SO4cn)
2co: SULFATE ION (SO4co)
2cp: SULFATE ION (SO4cp)
2cq: SULFATE ION (SO4cq)
2cr: SULFATE ION (SO4cr)
2cs: SULFATE ION (SO4cs)
2ct: SULFATE ION (SO4ct)
2cu: SULFATE ION (SO4cu)
2cv: SULFATE ION (SO4cv)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
-1
Ligand/Ion
CITRATE ANION
2
SO4
18
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC7 (SOFTWARE)
02: CC1 (SOFTWARE)
03: CC2 (SOFTWARE)
04: CC9 (SOFTWARE)
05: KC1 (SOFTWARE)
06: KC2 (SOFTWARE)
07: KC3 (SOFTWARE)
08: KC4 (SOFTWARE)
09: KC5 (SOFTWARE)
10: KC6 (SOFTWARE)
11: KC7 (SOFTWARE)
12: KC8 (SOFTWARE)
13: KC9 (SOFTWARE)
14: LC1 (SOFTWARE)
15: LC2 (SOFTWARE)
16: LC3 (SOFTWARE)
17: LC4 (SOFTWARE)
18: LC5 (SOFTWARE)
19: LC6 (SOFTWARE)
20: LC7 (SOFTWARE)
21: LC8 (SOFTWARE)
22: LC9 (SOFTWARE)
23: MC1 (SOFTWARE)
24: MC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
GLU A:199 , ARG A:202 , SER D:330
BINDING SITE FOR RESIDUE SO4 A 438
02
CC1
SOFTWARE
ALA A:131 , LEU D:179
BINDING SITE FOR RESIDUE SO4 A 450
03
CC2
SOFTWARE
ARG A:84 , PRO A:120 , GLU A:122 , ARG A:266 , GLU D:270 , SO4 D:432
BINDING SITE FOR RESIDUE SO4 A 451
04
CC9
SOFTWARE
PRO A:172 , ASP A:173 , SER A:269 , GLU A:270 , HOH A:532 , HOH A:637 , ARG D:84
BINDING SITE FOR RESIDUE SO4 A 458
05
KC1
SOFTWARE
SO4 A:451 , PRO D:172 , ASP D:173 , SER D:269 , GLU D:270 , HOH D:491
BINDING SITE FOR RESIDUE SO4 D 432
06
KC2
SOFTWARE
ARG D:119 , PRO D:120
BINDING SITE FOR RESIDUE SO4 D 433
07
KC3
SOFTWARE
ARG D:77 , GLU D:113
BINDING SITE FOR RESIDUE SO4 D 434
08
KC4
SOFTWARE
MET D:1 , ARG D:2
BINDING SITE FOR RESIDUE SO4 D 435
09
KC5
SOFTWARE
ARG D:24
BINDING SITE FOR RESIDUE SO4 D 436
10
KC6
SOFTWARE
PRO D:44 , PHE D:45 , GLY D:46 , PHE D:47 , PRO D:49 , GLU D:74 , HOH D:485
BINDING SITE FOR RESIDUE SO4 D 437
11
KC7
SOFTWARE
ARG D:24 , LEU D:129 , GLY D:130
BINDING SITE FOR RESIDUE SO4 D 438
12
KC8
SOFTWARE
GLU D:292 , HIS D:293 , ALA D:296
BINDING SITE FOR RESIDUE SO4 D 439
13
KC9
SOFTWARE
HIS D:372 , THR D:373
BINDING SITE FOR RESIDUE SO4 D 440
14
LC1
SOFTWARE
HIS D:61 , ASP D:63 , ASP D:162 , HIS D:380 , HIS D:400 , ZN D:450 , ZN D:451
BINDING SITE FOR RESIDUE SO4 D 441
15
LC2
SOFTWARE
HIS C:327 , LYS D:411
BINDING SITE FOR RESIDUE SO4 D 442
16
LC3
SOFTWARE
TYR D:189 , ARG D:227 , GLY D:340 , TYR D:341 , SER D:378 , GLY D:379
BINDING SITE FOR RESIDUE SO4 D 443
17
LC4
SOFTWARE
LYS D:298 , ASN D:301 , HIS D:323 , HIS D:327
BINDING SITE FOR RESIDUE SO4 D 444
18
LC5
SOFTWARE
ASN D:281
BINDING SITE FOR RESIDUE SO4 D 445
19
LC6
SOFTWARE
ARG D:2 , GLU D:427 , GLY D:428
BINDING SITE FOR RESIDUE SO4 D 446
20
LC7
SOFTWARE
HIS D:61 , LEU D:142 , PHE D:223 , VAL D:225 , GLU D:226 , ARG D:227
BINDING SITE FOR RESIDUE SO4 D 447
21
LC8
SOFTWARE
ARG D:77 , GLU D:113 , HIS D:117
BINDING SITE FOR RESIDUE SO4 D 448
22
LC9
SOFTWARE
ARG D:155
BINDING SITE FOR RESIDUE SO4 D 449
23
MC1
SOFTWARE
ASP D:63 , HIS D:64 , ASP D:162 , HIS D:400 , SO4 D:441 , ZN D:451
BINDING SITE FOR RESIDUE ZN D 450
24
MC2
SOFTWARE
HIS D:59 , HIS D:61 , HIS D:141 , ASP D:162 , SO4 D:441 , ZN D:450
BINDING SITE FOR RESIDUE ZN D 451
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ieka_ (A:)
1b: SCOP_d3iekb_ (B:)
1c: SCOP_d3iekc_ (C:)
1d: SCOP_d3iekd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Putative RNA-degradation protein TTHA0252
(9)
Thermus thermophilus [TaxId: 274]
(9)
1a
d3ieka_
A:
1b
d3iekb_
B:
1c
d3iekc_
C:
1d
d3iekd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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