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Biol. Unit 3
Info
Asym.Unit (300 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NATIVE TTHA0252 FROM THERMUS THERMOPHILUS HB8
Authors
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, S. Yokoyama, R. Masui
Date
:
22 Jul 09 (Deposition) - 28 Jul 10 (Release) - 28 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Metallo Beta Lactamase Fold, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of Native Ttha0252 From Thermus Thermophilus Hb8
To Be Published
[
close entry info
]
Hetero Components
(1, 23)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2bg: SULFATE ION (SO4bg)
2bh: SULFATE ION (SO4bh)
2bi: SULFATE ION (SO4bi)
2bj: SULFATE ION (SO4bj)
2bk: SULFATE ION (SO4bk)
2bl: SULFATE ION (SO4bl)
2bm: SULFATE ION (SO4bm)
2bn: SULFATE ION (SO4bn)
2bo: SULFATE ION (SO4bo)
2bp: SULFATE ION (SO4bp)
2bq: SULFATE ION (SO4bq)
2br: SULFATE ION (SO4br)
2bs: SULFATE ION (SO4bs)
2bt: SULFATE ION (SO4bt)
2bu: SULFATE ION (SO4bu)
2bv: SULFATE ION (SO4bv)
2bw: SULFATE ION (SO4bw)
2bx: SULFATE ION (SO4bx)
2by: SULFATE ION (SO4by)
2bz: SULFATE ION (SO4bz)
2c: SULFATE ION (SO4c)
2ca: SULFATE ION (SO4ca)
2cb: SULFATE ION (SO4cb)
2cc: SULFATE ION (SO4cc)
2cd: SULFATE ION (SO4cd)
2ce: SULFATE ION (SO4ce)
2cf: SULFATE ION (SO4cf)
2cg: SULFATE ION (SO4cg)
2ch: SULFATE ION (SO4ch)
2ci: SULFATE ION (SO4ci)
2cj: SULFATE ION (SO4cj)
2ck: SULFATE ION (SO4ck)
2cl: SULFATE ION (SO4cl)
2cm: SULFATE ION (SO4cm)
2cn: SULFATE ION (SO4cn)
2co: SULFATE ION (SO4co)
2cp: SULFATE ION (SO4cp)
2cq: SULFATE ION (SO4cq)
2cr: SULFATE ION (SO4cr)
2cs: SULFATE ION (SO4cs)
2ct: SULFATE ION (SO4ct)
2cu: SULFATE ION (SO4cu)
2cv: SULFATE ION (SO4cv)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
-1
Ligand/Ion
CITRATE ANION
2
SO4
23
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC3 (SOFTWARE)
02: HC3 (SOFTWARE)
03: HC4 (SOFTWARE)
04: HC5 (SOFTWARE)
05: HC6 (SOFTWARE)
06: HC7 (SOFTWARE)
07: HC8 (SOFTWARE)
08: HC9 (SOFTWARE)
09: IC1 (SOFTWARE)
10: IC2 (SOFTWARE)
11: IC3 (SOFTWARE)
12: IC4 (SOFTWARE)
13: IC5 (SOFTWARE)
14: IC6 (SOFTWARE)
15: IC7 (SOFTWARE)
16: IC8 (SOFTWARE)
17: IC9 (SOFTWARE)
18: JC1 (SOFTWARE)
19: JC2 (SOFTWARE)
20: JC3 (SOFTWARE)
21: JC4 (SOFTWARE)
22: JC5 (SOFTWARE)
23: JC6 (SOFTWARE)
24: JC7 (SOFTWARE)
25: JC8 (SOFTWARE)
26: JC9 (SOFTWARE)
27: LC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
ARG A:359 , ARG C:359 , GLU C:364
BINDING SITE FOR RESIDUE SO4 A 434
02
HC3
SOFTWARE
ASP C:96 , VAL C:100 , PRO C:252 , MET C:253 , ARG C:256
BINDING SITE FOR RESIDUE SO4 C 432
03
HC4
SOFTWARE
ARG C:24 , LEU C:129 , GLY C:130 , HOH C:466
BINDING SITE FOR RESIDUE SO4 C 433
04
HC5
SOFTWARE
HIS C:61 , LEU C:142 , PHE C:223 , VAL C:225 , GLU C:226 , ARG C:227 , HOH C:477
BINDING SITE FOR RESIDUE SO4 C 434
05
HC6
SOFTWARE
ARG A:73 , ARG C:424
BINDING SITE FOR RESIDUE SO4 C 435
06
HC7
SOFTWARE
ARG C:2 , PRO C:430
BINDING SITE FOR RESIDUE SO4 C 436
07
HC8
SOFTWARE
VAL C:371 , HIS C:372 , THR C:373
BINDING SITE FOR RESIDUE SO4 C 437
08
HC9
SOFTWARE
PHE C:47 , ASP C:48 , HOH C:486 , HOH C:539
BINDING SITE FOR RESIDUE SO4 C 438
09
IC1
SOFTWARE
ARG C:24 , HOH C:485
BINDING SITE FOR RESIDUE SO4 C 439
10
IC2
SOFTWARE
ARG C:302
BINDING SITE FOR RESIDUE SO4 C 440
11
IC3
SOFTWARE
GLU C:292 , HIS C:293
BINDING SITE FOR RESIDUE SO4 C 441
12
IC4
SOFTWARE
PRO C:172 , ASP C:173 , SER C:269 , GLU C:270
BINDING SITE FOR RESIDUE SO4 C 442
13
IC5
SOFTWARE
ARG C:84 , ARG C:263 , HOH C:489
BINDING SITE FOR RESIDUE SO4 C 443
14
IC6
SOFTWARE
ARG C:155
BINDING SITE FOR RESIDUE SO4 C 444
15
IC7
SOFTWARE
LYS C:298 , ASN C:301 , HIS C:323 , HIS C:327
BINDING SITE FOR RESIDUE SO4 C 445
16
IC8
SOFTWARE
LYS C:36
BINDING SITE FOR RESIDUE SO4 C 446
17
IC9
SOFTWARE
ARG C:2 , GLY C:426 , GLY C:428
BINDING SITE FOR RESIDUE SO4 C 447
18
JC1
SOFTWARE
TRP B:126 , VAL B:149 , GLN B:151 , THR B:156 , TRP C:126 , VAL C:149 , GLN C:151 , HOH C:482 , HOH C:498
BINDING SITE FOR RESIDUE SO4 C 448
19
JC2
SOFTWARE
TYR C:189 , ARG C:227 , GLY C:340 , TYR C:341 , SER C:378 , GLY C:379 , HOH C:515
BINDING SITE FOR RESIDUE SO4 C 449
20
JC3
SOFTWARE
GLY A:46 , PHE A:47 , HOH A:675 , GLY C:46 , PHE C:47 , SO4 C:454
BINDING SITE FOR RESIDUE SO4 C 450
21
JC4
SOFTWARE
ARG C:77 , HOH C:565
BINDING SITE FOR RESIDUE SO4 C 451
22
JC5
SOFTWARE
GLU C:113 , HIS C:117 , HOH C:565
BINDING SITE FOR RESIDUE SO4 C 452
23
JC6
SOFTWARE
SER C:330 , PRO C:366 , ARG C:368
BINDING SITE FOR RESIDUE SO4 C 453
24
JC7
SOFTWARE
PRO C:44 , PHE C:45 , GLY C:46 , PHE C:47 , GLU C:74 , SO4 C:450
BINDING SITE FOR RESIDUE SO4 C 454
25
JC8
SOFTWARE
ASP C:63 , HIS C:64 , ASP C:162 , HIS C:400 , ZN C:456
BINDING SITE FOR RESIDUE ZN C 455
26
JC9
SOFTWARE
HIS C:59 , HIS C:61 , HIS C:141 , ASP C:162 , ZN C:455
BINDING SITE FOR RESIDUE ZN C 456
27
LC2
SOFTWARE
HIS C:327 , LYS D:411
BINDING SITE FOR RESIDUE SO4 D 442
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ieka_ (A:)
1b: SCOP_d3iekb_ (B:)
1c: SCOP_d3iekc_ (C:)
1d: SCOP_d3iekd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Putative RNA-degradation protein TTHA0252
(9)
Thermus thermophilus [TaxId: 274]
(9)
1a
d3ieka_
A:
1b
d3iekb_
B:
1c
d3iekc_
C:
1d
d3iekd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
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