3AG1 - JenaLib

Asymmetric Unit (54, 54)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:31 , SER A:34 , ILE A:37 , ARG A:38 , TYR A:54 , VAL A:58 , HIS A:61 , ALA A:62 , MET A:65 , VAL A:70 , GLY A:125 , TRP A:126 , TYR A:371 , PHE A:377 , HIS A:378 , SER A:382 , VAL A:386 , PHE A:425 , GLN A:428 , ARG A:438 , ARG A:439 , HOH A:2045 , HOH A:2283 , HOH A:2700	BINDING SITE FOR RESIDUE HEA A 515
02	AC2	SOFTWARE	TRP A:126 , TRP A:236 , VAL A:243 , TYR A:244 , HIS A:290 , HIS A:291 , THR A:309 , THR A:316 , GLY A:317 , GLY A:352 , GLY A:355 , LEU A:358 , ALA A:359 , ASP A:364 , HIS A:368 , HIS A:376 , PHE A:377 , VAL A:380 , LEU A:381 , ARG A:438 , CMO A:520 , HOH A:2081 , HOH A:2183 , HOH A:2272 , HOH A:2341 , PRO B:69 , ILE B:72	BINDING SITE FOR RESIDUE HEA A 516
03	AC3	SOFTWARE	HIS A:240 , VAL A:243 , HIS A:291 , HEA A:516 , CU A:517	BINDING SITE FOR RESIDUE CMO A 520
04	AC4	SOFTWARE	HIS A:240 , HIS A:290 , HIS A:291 , CMO A:520	BINDING SITE FOR RESIDUE CU A 517
05	AC5	SOFTWARE	HIS A:368 , ASP A:369 , GLU B:198 , HOH B:2266 , HOH B:2267 , HOH B:2268	BINDING SITE FOR RESIDUE MG A 518
06	AC6	SOFTWARE	GLU A:40 , GLY A:45 , SER A:441 , HOH A:2258	BINDING SITE FOR RESIDUE NA A 519
07	AC7	SOFTWARE	TRP A:334 , LYS A:411 , HOH A:4025 , HOH B:4178 , ARG D:73 , GLU D:77 , VAL D:81 , ARG I:16	BINDING SITE FOR RESIDUE TGL A 523
08	AC8	SOFTWARE	ASN A:406 , THR A:408 , TRP A:409 , HOH A:2126 , PHE D:87 , GLN M:15	BINDING SITE FOR RESIDUE PGV A 524
09	AC9	SOFTWARE	PHE A:94 , PRO A:95 , ARG A:96 , MET A:97 , HOH A:2085 , HOH A:2289 , HIS C:9 , THR C:28 , ASN C:50 , MET C:54 , TRP C:57 , TRP C:58 , GLU C:64 , HIS C:71 , LEU C:79	BINDING SITE FOR RESIDUE PGV A 521
10	BC1	SOFTWARE	HIS B:161 , CYS B:196 , GLU B:198 , CYS B:200 , HIS B:204 , MET B:207	BINDING SITE FOR RESIDUE CUA B 228
11	BC2	SOFTWARE	ASN A:422 , PHE A:430 , LEU A:433 , LEU B:28 , SER B:35 , HOH B:4460 , HOH B:4575 , HOH I:4531	BINDING SITE FOR RESIDUE TGL B 521
12	BC3	SOFTWARE	PHE A:321 , HIS B:52 , MET B:56 , ASP B:57 , TRP B:65 , HOH B:4336 , HIS E:5 , ASP E:8 , PHE E:11 , ARG I:10	BINDING SITE FOR RESIDUE PSC B 229
13	BC4	SOFTWARE	MET A:271 , GLN B:59 , GLU B:62 , THR B:63 , HOH B:2605 , HOH B:3446 , HOH B:4134 , PEK S:1265 , ARG T:14 , ARG T:17 , PHE T:18	BINDING SITE FOR RESIDUE CHD B 1085
14	BC5	SOFTWARE	HIS A:233 , THR A:301 , TYR A:304 , HOH A:2155 , TRP C:99 , HIS C:103 , HOH C:4081	BINDING SITE FOR RESIDUE CHD C 525
15	BC6	SOFTWARE	TRP C:58 , VAL C:61 , SER C:65 , THR C:66 , ILE C:210 , ARG C:221 , HIS C:226 , PHE C:227 , HIS C:231 , HIS C:232 , PHE C:233 , GLY C:234 , CDL C:270 , HOH C:2065 , HOH C:2253 , HOH C:2559 , HOH F:4283	BINDING SITE FOR RESIDUE PGV C 267
16	BC7	SOFTWARE	ASP A:298 , TRP C:99 , TYR C:102 , HIS C:103 , HOH C:4305 , ASN H:22	BINDING SITE FOR RESIDUE PGV C 268
17	BC8	SOFTWARE	MET C:51 , MET C:54 , TYR C:55 , ARG C:59 , ARG C:63 , PHE C:67 , LYS C:224 , HIS C:226 , PGV C:267 , LYS J:8 , THR J:27	BINDING SITE FOR RESIDUE CDL C 270
18	BC9	SOFTWARE	ARG C:156 , PHE C:164 , LEU C:223 , PHE J:1	BINDING SITE FOR RESIDUE CHD C 271
19	CC1	SOFTWARE	TRP C:34 , MET C:40 , SER G:61 , GLY G:63 , PHE G:69	BINDING SITE FOR RESIDUE DMU C 272
20	CC2	SOFTWARE	CYS F:60 , CYS F:62 , CYS F:82 , CYS F:85	BINDING SITE FOR RESIDUE ZN F 99
21	CC3	SOFTWARE	TYR C:181 , TYR C:182 , ALA C:184 , PHE C:186 , THR C:187 , ILE C:188 , PHE C:198 , TRP G:62 , THR G:68 , PHE G:69 , PHE G:70 , HIS G:71 , ASN G:76 , HOH G:2350	BINDING SITE FOR RESIDUE PEK G 264
22	CC4	SOFTWARE	LYS C:157 , HIS C:158 , GLN C:161 , THR C:168 , ALA F:1 , ARG G:17 , CDL G:269 , HOH G:4242 , CHD O:229	BINDING SITE FOR RESIDUE PEK G 265
23	CC5	SOFTWARE	LEU C:127 , SER G:27 , LEU G:30 , CYS G:31 , ASN G:34 , HIS G:38 , PEK G:265 , PEK G:1263 , HOH G:4364 , PHE N:282 , ASP N:300 , TYR N:304 , ILE N:311 , ILE O:74 , LEU O:81 , TYR O:85	BINDING SITE FOR RESIDUE CDL G 269
24	CC6	SOFTWARE	SER G:2 , ALA G:3 , LYS G:5 , GLY G:6 , HIS G:8 , CDL G:269 , HOH G:4569 , ARG P:80 , ILE P:84 , LEU P:85 , TRP P:240	BINDING SITE FOR RESIDUE PEK G 1263
25	CC7	SOFTWARE	TYR J:32 , ARG J:33 , THR J:37	BINDING SITE FOR RESIDUE CHD J 60
26	CC8	SOFTWARE	LEU A:18 , LEU A:113 , PHE A:400 , ILE A:472 , ILE L:11 , SER L:14 , ARG L:20 , PHE L:29 , HOH L:4252 , HOH L:4269	BINDING SITE FOR RESIDUE TGL L 522
27	CC9	SOFTWARE	TRP D:98 , LEU M:28 , GLY M:31 , TRP M:32 , TYR M:35 , HIS M:36	BINDING SITE FOR RESIDUE DMU M 526
28	DC1	SOFTWARE	THR N:31 , SER N:34 , ILE N:37 , ARG N:38 , TYR N:54 , VAL N:58 , HIS N:61 , ALA N:62 , MET N:65 , ILE N:66 , GLY N:125 , TRP N:126 , TYR N:371 , PHE N:377 , HIS N:378 , SER N:382 , PHE N:425 , GLN N:428 , ARG N:438 , ARG N:439 , HOH N:3045 , HOH N:3283 , HOH N:3700	BINDING SITE FOR RESIDUE HEA N 515
29	DC2	SOFTWARE	TRP N:126 , TRP N:236 , VAL N:243 , TYR N:244 , HIS N:290 , HIS N:291 , THR N:309 , ILE N:312 , THR N:316 , GLY N:317 , GLY N:352 , GLY N:355 , ILE N:356 , LEU N:358 , ALA N:359 , ASP N:364 , HIS N:368 , HIS N:376 , PHE N:377 , VAL N:380 , LEU N:381 , ARG N:438 , CMO N:520 , HOH N:3081 , HOH N:3183 , HOH N:3272 , HOH N:3341 , ILE O:72	BINDING SITE FOR RESIDUE HEA N 516
30	DC3	SOFTWARE	HIS N:240 , VAL N:243 , HEA N:516 , CU N:517	BINDING SITE FOR RESIDUE CMO N 520
31	DC4	SOFTWARE	HIS N:240 , HIS N:290 , HIS N:291 , CMO N:520	BINDING SITE FOR RESIDUE CU N 517
32	DC5	SOFTWARE	HIS N:368 , ASP N:369 , SER O:197 , GLU O:198 , HOH O:3266 , HOH O:3267 , HOH O:3268	BINDING SITE FOR RESIDUE MG N 518
33	DC6	SOFTWARE	GLU N:40 , GLY N:45 , SER N:441 , HOH N:3258	BINDING SITE FOR RESIDUE NA N 519
34	DC7	SOFTWARE	ASN N:422 , HIS N:429 , PHE N:430 , LEU N:433 , LEU O:7 , LEU O:28 , VAL O:31 , SER O:35 , HOH Q:3606 , ARG V:43	BINDING SITE FOR RESIDUE TGL N 1521
35	DC8	SOFTWARE	THR N:17 , LEU N:18 , TRP N:25 , LEU N:113 , PHE N:400 , ILE N:472 , PRO Y:12 , PHE Y:13 , ARG Y:20 , PHE Y:28	BINDING SITE FOR RESIDUE TGL N 1522
36	DC9	SOFTWARE	TRP N:334 , LYS N:411 , LYS O:49 , SER Q:74 , GLU Q:77 , TRP Q:78 , VAL Q:81 , HOH V:4468	BINDING SITE FOR RESIDUE TGL N 1523
37	EC1	SOFTWARE	ASN N:406 , THR N:408 , TRP N:409 , HOH N:3126 , HOH N:4326 , THR Q:80 , PHE Q:87 , PHE X:9 , GLN Z:15 , HOH Z:4288	BINDING SITE FOR RESIDUE PGV N 1524
38	EC2	SOFTWARE	PHE N:94 , PRO N:95 , ARG N:96 , MET N:97 , HOH N:3085 , HOH N:3289 , HIS P:9 , ASN P:50 , TRP P:57 , TRP P:58 , GLU P:64 , HIS P:71 , LEU P:79	BINDING SITE FOR RESIDUE PGV N 1266
39	EC3	SOFTWARE	HIS O:161 , CYS O:196 , GLU O:198 , CYS O:200 , HIS O:204 , MET O:207	BINDING SITE FOR RESIDUE CUA O 228
40	EC4	SOFTWARE	ARG G:14 , ARG G:17 , PEK G:265 , MET N:271 , GLN O:59 , GLU O:62 , THR O:63 , HOH O:2446 , HOH O:3605 , HOH O:4150	BINDING SITE FOR RESIDUE CHD O 229
41	EC5	SOFTWARE	ASP N:300 , THR N:301 , TYR N:304 , TRP P:99 , HIS P:103 , PGV P:1268 , HOH P:3155 , HOH P:4495	BINDING SITE FOR RESIDUE CHD P 1525
42	EC6	SOFTWARE	VAL P:61 , SER P:65 , THR P:66 , PHE P:214 , ARG P:221 , HIS P:226 , PHE P:227 , HIS P:231 , HIS P:232 , PHE P:233 , GLY P:234 , CDL P:1270 , HOH P:3065 , HOH P:3253 , HOH P:3559 , HOH P:4415	BINDING SITE FOR RESIDUE PGV P 1267
43	EC7	SOFTWARE	ALA G:1 , ASP N:298 , TRP P:99 , HIS P:103 , ALA P:107 , CHD P:1525 , HOH P:4153 , HOH P:4567 , ASN U:22	BINDING SITE FOR RESIDUE PGV P 1268
44	EC8	SOFTWARE	MET P:51 , TYR P:55 , ARG P:59 , ILE P:62 , ARG P:63 , PHE P:67 , PHE P:220 , LYS P:224 , HIS P:226 , PGV P:1267 , LYS W:8 , THR W:27 , HOH W:4138	BINDING SITE FOR RESIDUE CDL P 1270
45	EC9	SOFTWARE	ARG P:156 , PHE P:164 , LEU P:223 , PHE W:1	BINDING SITE FOR RESIDUE CHD P 1271
46	FC1	SOFTWARE	PHE N:321 , MET O:56 , ASP O:57 , TRP O:65 , HIS R:5 , THR R:7 , ASP R:8 , PHE R:11 , ARG V:10	BINDING SITE FOR RESIDUE PSC R 1229
47	FC2	SOFTWARE	CYS S:60 , CYS S:62 , CYS S:82 , CYS S:85	BINDING SITE FOR RESIDUE ZN S 99
48	FC3	SOFTWARE	TRP A:275 , GLN B:59 , CHD B:1085 , HIS P:158 , GLN P:161 , TYR P:172 , HOH P:4533 , ALA S:1 , ARG T:17 , PHE T:21 , CDL T:1269	BINDING SITE FOR RESIDUE PEK S 1265
49	FC4	SOFTWARE	LYS C:77 , ARG C:80 , TYR C:81 , ILE C:84 , PHE C:244 , VAL C:247 , SER T:2 , ALA T:3 , LYS T:5 , GLY T:6 , HIS T:8	BINDING SITE FOR RESIDUE PEK T 263
50	FC5	SOFTWARE	HIS N:151 , LEU N:210 , TYR P:181 , TYR P:182 , ALA P:184 , PHE P:186 , THR P:187 , ILE P:188 , PHE P:198 , THR T:68 , PHE T:69 , PHE T:70 , HIS T:71 , ASN T:76 , HOH T:3350	BINDING SITE FOR RESIDUE PEK T 1264
51	FC6	SOFTWARE	PHE A:282 , ASP A:300 , TYR A:304 , SER A:307 , ILE A:311 , ILE B:74 , LEU B:78 , LEU P:127 , SER P:135 , TRP P:258 , PEK S:1265 , SER T:27 , LEU T:30 , CYS T:31 , ASN T:34 , HIS T:38 , ARG T:42 , HOH T:4124 , HOH T:4280 , HOH T:4505	BINDING SITE FOR RESIDUE CDL T 1269
52	FC7	SOFTWARE	TRP P:34 , HOH P:4415 , SER T:61 , TRP T:62 , GLY T:63 , PHE T:69 , HOH T:4130	BINDING SITE FOR RESIDUE DMU T 1272
53	FC8	SOFTWARE	TYR W:32 , ARG W:33 , MET W:36 , THR W:37	BINDING SITE FOR RESIDUE CHD W 1059
54	FC9	SOFTWARE	LEU Q:95 , TRP Q:98 , TYR Q:102 , LEU Z:27 , LEU Z:28 , GLY Z:31 , TRP Z:32 , TYR Z:35 , HIS Z:36	BINDING SITE FOR RESIDUE DMU Z 1526

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:514
 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot  Length:514

    Alignment length:514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
           COX1_BOVIN     1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
               SCOP domains d3ag1a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -3ag1A00 A:2-514 Cytochrome C Oxidase, chain A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) COX1  PDB: A:1-514 UniProt: 1-514                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX1_CUB  PDB: A:236-291 UniProt: 236-291               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ag1 A   1 mFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
                            |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                            1-FME

Chain B from PDB  Type:PROTEIN  Length:227
 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
           COX2_BOVIN     1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
               SCOP domains d3ag1b1 B:1-90 Mitochondrial cytochrome c oxidase, subunit II                             d3ag1b2 B:91-227 Cytochrome c oxidase                                                                                                     SCOP domains
               CATH domains -3ag1B01 B:2-91  [code=1.10.287.90, no name defined]                                       3ag1B02 B:92-227 Cupredoxins -  blue copper proteins                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeee..eeeeee.....eeeee...hhhhh.............eeee....eeeeeee....eeeeehhhheeeee.....eeeee.....eeeeee.......hhhh.eeeeeeehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) COX2_TM  PDB: B:1-91 UniProt: 1-91                                                         COX2_CUA  PDB: B:92-225 UniProt: 92-225                                                                                               -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------COX2  PDB: B:159-207 UniProt: 159-207            -------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ag1 B   1 mAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
                            1-FME

Chain C from PDB  Type:PROTEIN  Length:259
 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
           COX3_BOVIN     3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
               SCOP domains d3ag1c_ C: Mitochondrial cytochrome c oxidase, subunit III                                                                                                                                                                                                          SCOP domains
               CATH domains 3ag1C01 C:3-70  [code=1.10.287.70, no name defined]                 3ag1C02 C:71-261  [code=1.20.120.80, no name defined]                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -COX3  PDB: C:4-261 UniProt: 4-261                                                                                                                                                                                                                                  PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ag1 C   3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252

Chain D from PDB  Type:PROTEIN  Length:144
 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:144
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165    
          COX41_BOVIN    26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
               SCOP domains d3ag1d_ D: automated matches                                                                                                                     SCOP domains
               CATH domains 3ag1D00 D:4-147 Cytochrome C Oxidase, chain D                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhh.ee....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ag1 D   4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143

Chain E from PDB  Type:PROTEIN  Length:105
 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:105
                                    57        67        77        87        97       107       117       127       137       147     
          COX5A_BOVIN    48 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152
               SCOP domains d3ag1e_ E: Cytochrome c oxidase subunit E                                                                 SCOP domains
               CATH domains 3ag1E00 E:5-109  [code=1.25.40.40, no name defined]                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.2  PDB: E:5-32       ----------------------------------------Exon 3.4  PDB: E:73-109               Transcript 3 (1)
           Transcript 3 (2) ---------------------------Exon 3.3  PDB: E:32-72 UniProt: 75-115   ------------------------------------- Transcript 3 (2)
                 3ag1 E   5 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109
                                    14        24        34        44        54        64        74        84        94       104

Chain F from PDB  Type:PROTEIN  Length:98
 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:98
                                    41        51        61        71        81        91       101       111       121        
          COX5B_BOVIN    32 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 129
               SCOP domains d3ag1f_ F: Cytochrome c oxidase Subunit F                                                          SCOP domains
               CATH domains 3ag1F00 F:1-98 Cytochrome C Oxidase, chain F                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhh....................eeeee...eeeeee.........eeeeee....ee......eeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------COX5B_1  PDB: F:69-91  ------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) COX5B_2  PDB: F:1-98 UniProt: 32-129                                                               PROSITE (5)
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 3ag1 F   1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH  98
                                    10        20        30        40        50        60        70        80        90

Chain G from PDB  Type:PROTEIN  Length:84
 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:84
                                    22        32        42        52        62        72        82        92    
          CX6A2_BOVIN    13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  96
               SCOP domains d3ag1g_ G: Mitochondrial cytochrome c oxidase subunit VIa                            SCOP domains
               CATH domains 3ag1G00 G:1-84 Cytochrome C Oxidase, chain G                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh............................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ------------------------------------------------------COX6A  PDB: G:55-7------------ PROSITE (6)
           Transcript 4 (1) Exon 4.1     ---------------------------------------------Exon 4.3  PDB: G:59-84     Transcript 4 (1)
           Transcript 4 (2) ------------Exon 4.2  PDB: G:13-58 UniProt: 25-70         -------------------------- Transcript 4 (2)
                 3ag1 G   1 ASAAKGDHGGtGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  84
                                    10|       20        30        40        50        60        70        80    
                                     11-TPO

Chain H from PDB  Type:PROTEIN  Length:79
 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:79
                                    17        27        37        47        57        67        77         
          CX6B1_BOVIN     8 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  86
               SCOP domains d3ag1h_ H: automated matches                                                    SCOP domains
               CATH domains 3ag1H00 H:7-85 Cytochrome C oxidase subunit h                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------CHCH  PDB: H:26-72 UniProt: 27-73              ------------- PROSITE (4)
                 Transcript ------------------------------------------------------------------------------- Transcript
                 3ag1 H   7 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  85
                                    16        26        36        46        56        66        76

Chain I from PDB  Type:PROTEIN  Length:73
 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:73
                                    11        21        31        41        51        61        71   
          COX6C_BOVIN     2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  74
               SCOP domains d3ag1i_ I: Mitochondrial cytochrome c oxidase subunit VIc                 SCOP domains
               CATH domains -3ag1I00 I:2-73 Cytochrome C Oxidase, chain I                             CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: I:1-36 UniProt: 1-37 Exon 1.3  PDB: I:37-73 UniProt: 38-74 Transcript 1
                 3ag1 I   1 sTALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  73
                            |       10        20        30        40        50        60        70   
                            1-SAC

Chain J from PDB  Type:PROTEIN  Length:58
 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:58
                                    31        41        51        61        71        
          CX7A1_BOVIN    22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK  79
               SCOP domains d3ag1j_ J: Mitochondrial cytochrome c oxidase subunit VIIa SCOP domains
               CATH domains 3ag1J00 J:1-58 Cytochrome C Oxidase, chain J               CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2     Exon 2.3  PDB: J:14-42       ---------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.4          Transcript 2 (2)
                 3ag1 J   1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK  58
                                    10        20        30        40        50

Chain K from PDB  Type:PROTEIN  Length:49
 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:49
                                    39        49        59        69         
          COX7B_BOVIN    30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  78
               SCOP domains d3ag1k_ K: automated matches                      SCOP domains
               CATH domains 3ag1K00 K:6-54 Cytochrome C Oxidase, chain K      CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 3ag1 K   6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  54
                                    15        25        35        45

Chain L from PDB  Type:PROTEIN  Length:46
 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot  Length:63

    Alignment length:46
                                    27        37        47        57      
          COX7C_BOVIN    18 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  63
               SCOP domains d3ag1l_ L:                                     SCOP domains
               CATH domains 3ag1L00 L:2-47 Cytochrome C Oxidase, chain L   CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 3ag1 L   2 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  47
                                    11        21        31        41

Chain M from PDB  Type:PROTEIN  Length:43
 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:43
                                    34        44        54        64   
          COX8B_BOVIN    25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  67
               SCOP domains d3ag1m_ M: automated matches                SCOP domains
               CATH domains 3ag1M00 M:1-43                              CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 3ag1 M   1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  43
                                    10        20        30        40

Chain N from PDB  Type:PROTEIN  Length:514
 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot  Length:514

    Alignment length:514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
           COX1_BOVIN     1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
               SCOP domains d3ag1n_ N: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -3ag1N00 N:2-514 Cytochrome C Oxidase, chain A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhh..............ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) COX1  PDB: N:1-514 UniProt: 1-514                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX1_CUB  PDB: N:236-291 UniProt: 236-291               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ag1 N   1 mFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
                            1-FME

Chain O from PDB  Type:PROTEIN  Length:227
 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
           COX2_BOVIN     1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
               SCOP domains d3ag1o1 O:1-90 Mitochondrial cytochrome c oxidase, subunit II                             d3ag1o2 O:91-227 Cytochrome c oxidase                                                                                                     SCOP domains
               CATH domains -3ag1O01 O:2-91  [code=1.10.287.90, no name defined]                                       3ag1O02 O:92-227 Cupredoxins -  blue copper proteins                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeee..eeeeee.....eeeee...hhhhh.............eeee....eeeeeee....eeeeehhhheeeee.....eeeee.....eeeee........hhhhh.eeeeeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) COX2_TM  PDB: O:1-91 UniProt: 1-91                                                         COX2_CUA  PDB: O:92-225 UniProt: 92-225                                                                                               -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------COX2  PDB: O:159-207 UniProt: 159-207            -------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ag1 O   1 mAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
                            1-FME

Chain P from PDB  Type:PROTEIN  Length:259
 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
           COX3_BOVIN     3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
               SCOP domains d3ag1p_ P: Mitochondrial cytochrome c oxidase, subunit III                                                                                                                                                                                                          SCOP domains
               CATH domains 3ag1P01 P:3-70  [code=1.10.287.70, no name defined]                 3ag1P02 P:71-261  [code=1.20.120.80, no name defined]                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -COX3  PDB: P:4-261 UniProt: 4-261                                                                                                                                                                                                                                  PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ag1 P   3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252

Chain Q from PDB  Type:PROTEIN  Length:144
 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:144
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165    
          COX41_BOVIN    26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
               SCOP domains d3ag1q_ Q: automated matches                                                                                                                     SCOP domains
               CATH domains 3ag1Q00 Q:4-147 Cytochrome C Oxidase, chain D                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhh.ee....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ag1 Q   4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143

Chain R from PDB  Type:PROTEIN  Length:105
 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:105
                                    57        67        77        87        97       107       117       127       137       147     
          COX5A_BOVIN    48 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152
               SCOP domains d3ag1r_ R: Cytochrome c oxidase subunit E                                                                 SCOP domains
               CATH domains 3ag1R00 R:5-109  [code=1.25.40.40, no name defined]                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.2  PDB: R:5-32       ----------------------------------------Exon 3.4  PDB: R:73-109               Transcript 3 (1)
           Transcript 3 (2) ---------------------------Exon 3.3  PDB: R:32-72 UniProt: 75-115   ------------------------------------- Transcript 3 (2)
                 3ag1 R   5 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109
                                    14        24        34        44        54        64        74        84        94       104

Chain S from PDB  Type:PROTEIN  Length:98
 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:98
                                    41        51        61        71        81        91       101       111       121        
          COX5B_BOVIN    32 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 129
               SCOP domains d3ag1s_ S: Cytochrome c oxidase Subunit F                                                          SCOP domains
               CATH domains 3ag1S00 S:1-98 Cytochrome C Oxidase, chain F                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhh....................eeeee...eeeeee.........eeeeee....ee......eeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------COX5B_1  PDB: S:69-91  ------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) COX5B_2  PDB: S:1-98 UniProt: 32-129                                                               PROSITE (5)
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 3ag1 S   1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH  98
                                    10        20        30        40        50        60        70        80        90

Chain T from PDB  Type:PROTEIN  Length:84
 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:84
                                    22        32        42        52        62        72        82        92    
          CX6A2_BOVIN    13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  96
               SCOP domains d3ag1t_ T: Mitochondrial cytochrome c oxidase subunit VIa                            SCOP domains
               CATH domains 3ag1T00 T:1-84 Cytochrome C Oxidase, chain G                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhh................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ------------------------------------------------------COX6A  PDB: T:55-7------------ PROSITE (6)
           Transcript 4 (1) Exon 4.1     ---------------------------------------------Exon 4.3  PDB: T:59-84     Transcript 4 (1)
           Transcript 4 (2) ------------Exon 4.2  PDB: T:13-58 UniProt: 25-70         -------------------------- Transcript 4 (2)
                 3ag1 T   1 ASAAKGDHGGtGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  84
                                    10|       20        30        40        50        60        70        80    
                                     11-TPO

Chain U from PDB  Type:PROTEIN  Length:79
 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:79
                                    17        27        37        47        57        67        77         
          CX6B1_BOVIN     8 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  86
               SCOP domains d3ag1u_ U: automated matches                                                    SCOP domains
               CATH domains 3ag1U00 U:7-85 Cytochrome C oxidase subunit h                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------CHCH  PDB: U:26-72 UniProt: 27-73              ------------- PROSITE (4)
                 Transcript ------------------------------------------------------------------------------- Transcript
                 3ag1 U   7 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  85
                                    16        26        36        46        56        66        76

Chain V from PDB  Type:PROTEIN  Length:73
 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:73
                                    11        21        31        41        51        61        71   
          COX6C_BOVIN     2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  74
               SCOP domains d3ag1v_ V: Mitochondrial cytochrome c oxidase subunit VIc                 SCOP domains
               CATH domains -3ag1V00 V:2-73 Cytochrome C Oxidase, chain I                             CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: V:1-36 UniProt: 1-37 Exon 1.3  PDB: V:37-73 UniProt: 38-74 Transcript 1
                 3ag1 V   1 sTALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  73
                            |       10        20        30        40        50        60        70   
                            1-SAC

Chain W from PDB  Type:PROTEIN  Length:58
 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:58
                                    31        41        51        61        71        
          CX7A1_BOVIN    22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK  79
               SCOP domains d3ag1w_ W: Mitochondrial cytochrome c oxidase subunit VIIa SCOP domains
               CATH domains 3ag1W00 W:1-58 Cytochrome C Oxidase, chain J               CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2     Exon 2.3  PDB: W:14-42       ---------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.4          Transcript 2 (2)
                 3ag1 W   1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK  58
                                    10        20        30        40        50

Chain X from PDB  Type:PROTEIN  Length:49
 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:49
                                    39        49        59        69         
          COX7B_BOVIN    30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  78
               SCOP domains d3ag1x_ X: automated matches                      SCOP domains
               CATH domains 3ag1X00 X:6-54 Cytochrome C Oxidase, chain K      CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 3ag1 X   6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  54
                                    15        25        35        45

Chain Y from PDB  Type:PROTEIN  Length:46
 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot  Length:63

    Alignment length:46
                                    27        37        47        57      
          COX7C_BOVIN    18 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  63
               SCOP domains d3ag1y_ Y:                                     SCOP domains
               CATH domains 3ag1Y00 Y:2-47 Cytochrome C Oxidase, chain L   CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 3ag1 Y   2 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  47
                                    11        21        31        41

Chain Z from PDB  Type:PROTEIN  Length:43
 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:43
                                    34        44        54        64   
          COX8B_BOVIN    25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  67
               SCOP domains d3ag1z_ Z: automated matches                SCOP domains
               CATH domains 3ag1Z00 Z:1-43                              CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 3ag1 Z   1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  43
                                    10        20        30        40

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit(hide GO term definitions)

Chain A,N (COX1_BOVIN | P00396)

molecular function
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0009060	aerobic respiration	The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006119	oxidative phosphorylation	The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0070469	respiratory chain	The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain B,O (COX2_BOVIN | P68530)

molecular function
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0022900	electron transport chain	A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0070469	respiratory chain	The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain C,P (COX3_BOVIN | P00415)

molecular function
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
	GO:0015002	heme-copper terminal oxidase activity	Catalysis of the four-electron reduction of dioxygen (O2) to water, coupled to generation of a proton electrochemical gradient across a membrane.
biological process
	GO:0019646	aerobic electron transport chain	A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to oxygen to generate a transmembrane electrochemical gradient.
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
	GO:0008535	respiratory chain complex IV assembly	The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms.
	GO:0022904	respiratory electron transport chain	A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain D,Q (COX41_BOVIN | P00423)

molecular function
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0031966	mitochondrial membrane	Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
	GO:0005751	mitochondrial respiratory chain complex IV	A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain E,R (COX5A_BOVIN | P00426)

molecular function
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005751	mitochondrial respiratory chain complex IV	A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0043209	myelin sheath	An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain F,S (COX5B_BOVIN | P00428)

molecular function
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005740	mitochondrial envelope	The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain G,T (CX6A2_BOVIN | P07471)

molecular function
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005751	mitochondrial respiratory chain complex IV	A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain H,U (CX6B1_BOVIN | P00429)

molecular function
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
cellular component
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005758	mitochondrial intermembrane space	The region between the inner and outer lipid bilayers of the mitochondrial envelope.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain I,V (COX6C_BOVIN | P04038)

molecular function
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain J,W (CX7A1_BOVIN | P07470)

molecular function
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
biological process
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005746	mitochondrial respiratory chain	The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain K,X (COX7B_BOVIN | P13183)

molecular function
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
	GO:0007417	central nervous system development	The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005746	mitochondrial respiratory chain	The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain L,Y (COX7C_BOVIN | P00430)

molecular function
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain M,Z (COX8B_BOVIN | P10175)

molecular function
	GO:0004129	cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005751	mitochondrial respiratory chain complex IV	A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0045277	respiratory chain complex IV	A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (18, 64)

Sites (54, 54)

SS Bonds (4, 4)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (10, 20)

Exons (11, 22)

Sequences/Alignments

Classification and Annotation

SCOP Domains (14, 28)

CATH Domains (15, 30)

Pfam Domains (0, 0)

Gene Ontology (32, 127)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File