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(-) Description

Title :  ZINC ION BINDING STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY REDUCED STATE
 
Authors :  K. Muramoto, K. Hirata, K. Shinzawa-Itoh, S. Yoko-O, E. Yamashita, H. A T. Tsukihara, S. Yoshikawa
Date :  13 Mar 07  (Deposition) - 29 May 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Muramoto, K. Hirata, K. Shinzawa-Itoh, S. Yoko-O, E. Yamashita, H. Aoyama, T. Tsukihara, S. Yoshikawa
A Histidine Residue Acting As A Controlling Site For Dioxygen Reduction And Proton Pumping By Cytochrome C Oxidase
Proc. Natl. Acad. Sci. Usa V. 104 7881 2007
PubMed-ID: 17470809  |  Reference-DOI: 10.1073/PNAS.0610031104

(-) Compounds

Molecule 1 - CYTOCHROME C OXIDASE SUBUNIT 1
    ChainsA, N
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE I
    TissueHEART
 
Molecule 2 - CYTOCHROME C OXIDASE SUBUNIT 2
    ChainsB, O
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE II
    TissueHEART
 
Molecule 3 - CYTOCHROME C OXIDASE SUBUNIT 3
    ChainsC, P
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE III
    TissueHEART
 
Molecule 4 - CYTOCHROME C OXIDASE SUBUNIT 4 ISOFORM 1
    ChainsD, Q
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE SUBUNIT IV ISOFORM 1, COX IV-1, CYTOCHROME C OXIDASE POLYPEPTIDE IV
    TissueHEART
 
Molecule 5 - CYTOCHROME C OXIDASE POLYPEPTIDE VA
    ChainsE, R
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    TissueHEART
 
Molecule 6 - CYTOCHROME C OXIDASE POLYPEPTIDE VB
    ChainsF, S
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymVI
    TissueHEART
 
Molecule 7 - CYTOCHROME C OXIDASE POLYPEPTIDE VIA-HEART
    ChainsG, T
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCOXVIAH, POLYPEPTIDE VIB
    TissueHEART
 
Molecule 8 - CYTOCHROME C OXIDASE SUBUNIT VIB ISOFORM 1
    ChainsH, U
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCOX VIB-1, CYTOCHROME C OXIDASE POLYPEPTIDE VII, CYTOCHROME C OXIDASE SUBUNIT AED
    TissueHEART
 
Molecule 9 - CYTOCHROME C OXIDASE POLYPEPTIDE VIC
    ChainsI, V
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymSTA
    TissueHEART
 
Molecule 10 - CYTOCHROME C OXIDASE POLYPEPTIDE VIIA-HEART
    ChainsJ, W
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE SUBUNIT VIIA-H, COX VIIA-M, VIIIC
    TissueHEART
 
Molecule 11 - CYTOCHROME C OXIDASE POLYPEPTIDE VIIB
    ChainsK, X
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymIHQ
    TissueHEART
 
Molecule 12 - CYTOCHROME C OXIDASE POLYPEPTIDE VIIC
    ChainsL, Y
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymVIIIA
    TissueHEART
 
Molecule 13 - CYTOCHROME C OXIDASE POLYPEPTIDE VIII-HEART
    ChainsM, Z
    EC Number1.9.3.1
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE SUBUNIT 8-1, VIIIB, IX
    TissueHEART

 Structural Features

(-) Chains, Units

  1234567891011121314151617181920212223242526
Asymmetric/Biological Unit ABCDEFGHIJKLMNOPQRSTUVWXYZ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (16, 64)

Asymmetric/Biological Unit (16, 64)
No.NameCountTypeFull Name
1CDL4Ligand/IonCARDIOLIPIN
2CHD8Ligand/IonCHOLIC ACID
3CU2Ligand/IonCOPPER (II) ION
4CUA2Ligand/IonDINUCLEAR COPPER ION
5DMU4Ligand/IonDECYL-BETA-D-MALTOPYRANOSIDE
6FME4Mod. Amino AcidN-FORMYLMETHIONINE
7HEA4Ligand/IonHEME-A
8MG2Ligand/IonMAGNESIUM ION
9NA2Ligand/IonSODIUM ION
10PEK6Ligand/Ion(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
11PGV8Ligand/Ion(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
12PSC2Ligand/Ion(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
13SAC2Mod. Amino AcidN-ACETYL-SERINE
14TGL6Ligand/IonTRISTEAROYLGLYCEROL
15TPO2Mod. Amino AcidPHOSPHOTHREONINE
16ZN6Ligand/IonZINC ION

(-) Sites  (56, 56)

Asymmetric Unit (56, 56)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:240 , HIS A:290 , HIS A:291BINDING SITE FOR RESIDUE CU A 517
02AC2SOFTWAREHIS A:368 , ASP A:369 , SER B:197 , GLU B:198 , HOH B:2031 , HOH B:2032 , HOH B:2033BINDING SITE FOR RESIDUE MG A 518
03AC3SOFTWAREGLU A:40 , GLY A:45 , SER A:441 , HOH A:2026BINDING SITE FOR RESIDUE NA A 519
04AC4SOFTWAREHIS A:503 , HOH A:2077 , HOH A:2078 , HIS L:2BINDING SITE FOR RESIDUE ZN A 603
05AC5SOFTWAREMET A:28 , SER A:34 , ILE A:37 , ARG A:38 , TYR A:54 , VAL A:58 , HIS A:61 , ALA A:62 , MET A:65 , ILE A:73 , GLY A:125 , TRP A:126 , TYR A:371 , PHE A:377 , HIS A:378 , LEU A:381 , SER A:382 , PHE A:425 , GLN A:428 , ARG A:438 , ARG A:439 , VAL A:465 , MET A:468 , HOH A:2005 , HOH A:2036 , HOH A:2072BINDING SITE FOR RESIDUE HEA A 515
06AC6SOFTWARETRP A:126 , TRP A:236 , VAL A:243 , TYR A:244 , HIS A:290 , HIS A:291 , THR A:309 , ILE A:312 , ALA A:313 , THR A:316 , GLY A:317 , THR A:349 , GLY A:352 , GLY A:355 , LEU A:358 , ALA A:359 , ASP A:364 , HIS A:368 , VAL A:373 , HIS A:376 , PHE A:377 , VAL A:380 , LEU A:381 , ARG A:438 , HOH A:2007 , HOH A:2016 , HOH A:2034 , HOH A:2044 , ILE B:34 , PRO B:69 , ILE B:72BINDING SITE FOR RESIDUE HEA A 516
07AC7SOFTWAREASN A:406 , THR A:408 , TRP A:409 , HOH A:4201 , ALA D:84 , PHE D:87 , GLN M:15 , ALA M:16 , LEU M:19 , SER M:20 , HOH M:2160BINDING SITE FOR RESIDUE PGV A 524
08AC8SOFTWAREHIS A:233 , ASP A:300 , THR A:301 , TYR A:304 , TRP C:99 , HIS C:103 , PGV C:268BINDING SITE FOR RESIDUE CHD A 525
09AC9SOFTWAREHIS B:161 , CYS B:196 , GLU B:198 , CYS B:200 , HIS B:204 , MET B:207BINDING SITE FOR RESIDUE CUA B 228
10BC1SOFTWAREASN A:422 , PHE A:430 , LEU A:433 , HOH A:4145 , LEU B:7 , LEU B:28 , VAL B:31 , SER B:35 , LEU B:39 , HOH B:4171 , ARG I:43 , HOH I:2383BINDING SITE FOR RESIDUE TGL B 521
11BC2SOFTWAREPHE A:321 , ILE B:41 , MET B:45 , HIS B:52 , MET B:56 , ASP B:57 , VAL B:61 , TRP B:65 , HIS E:5 , ASP E:8 , PHE E:11 , LEU E:41 , HOH E:2129 , HOH E:2401 , ARG I:10 , ALA I:14 , HOH I:4178BINDING SITE FOR RESIDUE PSC B 230
12BC3SOFTWAREMET A:271 , GLU B:62 , THR B:63 , HOH B:2112 , HOH B:2382 , PEK P:1265 , ARG T:14 , PHE T:18 , GLY T:22 , HOH T:3309BINDING SITE FOR RESIDUE CHD B 1086
13BC4SOFTWARETRP C:34 , MET C:40 , TRP G:62 , GLY G:63BINDING SITE FOR RESIDUE DMU C 272
14BC5SOFTWAREHIS C:148 , HIS C:232 , GLU C:236 , HOH C:2027BINDING SITE FOR RESIDUE ZN C 262
15BC6SOFTWAREHIS A:151 , TRP C:34 , TYR C:181 , TYR C:182 , ALA C:184 , PHE C:186 , THR C:187 , ILE C:188 , PHE C:198 , GLY C:202 , TRP G:62 , THR G:68 , PHE G:69 , PHE G:70 , HIS G:71 , ASN G:76 , HOH G:2261BINDING SITE FOR RESIDUE PEK C 264
16BC7SOFTWARELYS C:157 , HIS C:158 , THR C:168 , TYR C:172 , HOH C:4087 , ALA F:1 , LYS G:5 , ARG G:17 , PHE G:21 , GLY G:22 , CDL G:269 , TRP N:275 , SER N:279 , ILE N:314 , CHD N:1604 , GLN O:59 , THR O:66BINDING SITE FOR RESIDUE PEK C 265
17BC8SOFTWAREPHE A:94 , PRO A:95 , ARG A:96 , MET A:97 , HOH A:2233 , HIS C:9 , THR C:28 , ASN C:50 , MET C:54 , TRP C:57 , TRP C:58 , GLU C:64 , HIS C:71 , LEU C:79 , GLU C:90 , HOH C:2145BINDING SITE FOR RESIDUE PGV C 266
18BC9SOFTWAREMET C:54 , TRP C:58 , VAL C:61 , SER C:65 , THR C:66 , HIS C:71 , GLU C:90 , HIS C:207 , ILE C:210 , THR C:213 , PHE C:214 , ARG C:221 , HIS C:226 , PHE C:227 , THR C:228 , HIS C:231 , HIS C:232 , PHE C:233 , GLY C:234 , CDL C:270 , HOH C:2221 , HOH C:2357 , HOH F:2137BINDING SITE FOR RESIDUE PGV C 267
19CC1SOFTWARECHD A:525 , TRP C:99 , TYR C:102 , HIS C:103 , ASN H:22 , ASN H:24 , CDL T:1269BINDING SITE FOR RESIDUE PGV C 268
20CC2SOFTWAREMET C:51 , LEU C:52 , MET C:54 , TYR C:55 , TRP C:58 , ARG C:59 , ARG C:63 , PHE C:67 , THR C:213 , ILE C:216 , VAL C:217 , PHE C:220 , LYS C:224 , HIS C:226 , PGV C:267 , HOH C:4089 , LYS J:8 , THR J:27 , HOH J:4266BINDING SITE FOR RESIDUE CDL C 270
21CC3SOFTWAREARG C:156 , LEU C:160 , PHE C:164 , LEU C:223 , HOH C:4275 , PHE J:1BINDING SITE FOR RESIDUE CHD C 271
22CC4SOFTWARETRP A:334 , LEU A:342 , GLY A:343 , LYS A:411 , PHE A:414 , PHE A:418 , ILE B:42 , HOH B:2360 , ARG D:73 , SER D:74 , GLU D:77 , TRP D:78 , ILE D:89 , HOH D:4040 , HOH D:4382BINDING SITE FOR RESIDUE TGL D 523
23CC5SOFTWARECYS F:60 , CYS F:62 , CYS F:82 , CYS F:85BINDING SITE FOR RESIDUE ZN F 99
24CC6SOFTWARELEU C:127 , LEU C:131 , LEU C:250 , TYR C:253 , PEK C:265 , LEU G:23 , SER G:27 , LEU G:30 , CYS G:31 , ASN G:34 , LEU G:37 , HIS G:38 , ARG G:42 , HOH G:4354 , PHE N:282 , ILE N:286 , ASP N:300 , TYR N:304 , SER N:307 , ILE N:311 , ALA O:77 , LEU O:78 , LEU O:81 , TYR O:85 , PGV P:1268BINDING SITE FOR RESIDUE CDL G 269
25CC7SOFTWARESER G:2 , ALA G:3 , LYS G:5 , GLY G:6 , HIS G:8 , LYS P:77 , ARG P:80 , TYR P:81 , ILE P:84 , PHE P:98 , TRP P:240 , PHE P:244 , VAL P:247BINDING SITE FOR RESIDUE PEK G 1263
26CC8SOFTWARETYR J:32 , ARG J:33 , MET J:36 , THR J:37 , LEU J:40BINDING SITE FOR RESIDUE CHD J 60
27CC9SOFTWARETHR A:17 , LEU A:20 , LEU A:21 , PHE A:22 , TRP A:25 , TRP A:81 , LEU A:113 , PHE A:400 , ILE A:472 , ILE L:11 , PRO L:12 , PHE L:13 , SER L:14 , ARG L:20 , MET L:24 , MET L:25 , PHE L:28 , PHE L:29BINDING SITE FOR RESIDUE TGL L 522
28DC1SOFTWARETRP D:98 , LEU M:27 , LEU M:28 , GLY M:31 , TRP M:32 , TYR M:35 , HIS M:36BINDING SITE FOR RESIDUE DMU M 526
29DC2SOFTWAREHIS N:240 , HIS N:290 , HIS N:291BINDING SITE FOR RESIDUE CU N 517
30DC3SOFTWAREHIS N:368 , ASP N:369 , GLU O:198 , HOH O:3031 , HOH O:3032 , HOH O:3033BINDING SITE FOR RESIDUE MG N 1518
31DC4SOFTWAREGLU N:40 , GLY N:45 , SER N:441 , HOH N:3026BINDING SITE FOR RESIDUE NA N 1519
32DC5SOFTWAREHIS N:503 , HIS Y:2 , HOH Y:3077 , HOH Y:3078BINDING SITE FOR RESIDUE ZN N 1603
33DC6SOFTWARESER N:34 , ILE N:37 , ARG N:38 , TYR N:54 , VAL N:58 , HIS N:61 , ALA N:62 , MET N:65 , ILE N:73 , GLY N:125 , TRP N:126 , TYR N:371 , PHE N:377 , HIS N:378 , LEU N:381 , SER N:382 , VAL N:386 , PHE N:425 , GLN N:428 , ARG N:438 , ARG N:439 , VAL N:465 , MET N:468 , HOH N:3005 , HOH N:3036 , HOH N:3072BINDING SITE FOR RESIDUE HEA N 515
34DC7SOFTWARETRP N:126 , TRP N:236 , VAL N:243 , TYR N:244 , ILE N:247 , HIS N:290 , HIS N:291 , ILE N:312 , ALA N:313 , THR N:316 , GLY N:317 , THR N:349 , GLY N:352 , GLY N:355 , ILE N:356 , LEU N:358 , ALA N:359 , ASP N:364 , HIS N:368 , VAL N:373 , HIS N:376 , PHE N:377 , LEU N:381 , ARG N:438 , HOH N:3007 , HOH N:3016 , HOH N:3034 , HOH N:3044 , ILE O:34 , PRO O:69 , LEU O:73BINDING SITE FOR RESIDUE HEA N 516
35DC8SOFTWAREPEK C:265 , ARG G:14 , ARG G:17 , GLY G:22 , MET N:271 , HOH N:2309 , HOH N:3112 , HOH N:3382 , GLU O:62 , THR O:63BINDING SITE FOR RESIDUE CHD N 1604
36DC9SOFTWARETHR N:17 , LEU N:18 , LEU N:20 , TRP N:25 , LEU N:113 , PHE N:400 , ILE N:472 , ILE Y:11 , PRO Y:12 , PHE Y:13 , SER Y:14 , MET Y:24 , PHE Y:28 , PHE Y:29 , HOH Y:4161BINDING SITE FOR RESIDUE TGL N 1522
37EC1SOFTWARETRP N:334 , MET N:339 , LEU N:342 , GLY N:343 , LYS N:411 , PHE N:418 , HOH N:4206 , HOH N:4235 , LEU O:39 , ILE O:42 , LEU O:46 , LYS O:49 , HOH O:3360 , ARG Q:73 , SER Q:74 , THR Q:75 , GLU Q:77 , TRP Q:78 , ILE Q:89 , ARG V:16BINDING SITE FOR RESIDUE TGL N 1523
38EC2SOFTWAREASN N:406 , THR N:408 , TRP N:409 , HOH N:4191 , ALA Q:84 , PHE Q:87 , GLN Z:15 , ALA Z:16 , LEU Z:19 , SER Z:20 , HOH Z:3160BINDING SITE FOR RESIDUE PGV N 1524
39EC3SOFTWAREHIS O:161 , CYS O:196 , GLU O:198 , CYS O:200 , HIS O:204 , MET O:207BINDING SITE FOR RESIDUE CUA O 228
40EC4SOFTWAREASN N:422 , PHE N:426 , PHE N:430 , LEU N:433 , LEU O:7 , LEU O:28 , VAL O:31 , PHE O:32 , SER O:35 , LEU O:39 , HOH O:4117 , HOH O:4170 , ARG V:43 , HOH V:3383BINDING SITE FOR RESIDUE TGL O 1521
41EC5SOFTWAREPHE N:321 , HIS N:328 , ILE O:41 , HIS O:52 , MET O:56 , ASP O:57 , VAL O:61 , TRP O:65 , LEU O:68 , HIS R:5 , ASP R:8 , PHE R:11 , ASP R:40 , LEU R:41 , ARG V:10 , ALA V:14BINDING SITE FOR RESIDUE PSC O 1230
42EC6SOFTWARETRP P:34 , MET P:40 , PEK P:1264 , TRP T:62 , GLY T:63BINDING SITE FOR RESIDUE DMU P 1272
43EC7SOFTWAREHIS P:148 , HIS P:232 , GLU P:236 , HOH P:3027BINDING SITE FOR RESIDUE ZN P 1262
44EC8SOFTWAREHIS N:233 , ASP N:300 , THR N:301 , TYR N:304 , TRP P:99 , HIS P:103 , PGV P:1268BINDING SITE FOR RESIDUE CHD P 1525
45EC9SOFTWAREHIS N:151 , TRP P:34 , TYR P:181 , TYR P:182 , ALA P:184 , PHE P:186 , THR P:187 , ILE P:188 , PHE P:198 , GLY P:202 , DMU P:1272 , TRP T:62 , THR T:68 , PHE T:69 , PHE T:70 , HIS T:71 , ASN T:76 , HOH T:3261BINDING SITE FOR RESIDUE PEK P 1264
46FC1SOFTWARETRP A:275 , SER A:279 , ILE A:314 , GLN B:59 , CHD B:1086 , HOH B:4027 , LYS P:157 , HIS P:158 , THR P:168 , TYR P:172 , ALA S:1 , ARG T:17 , PHE T:21 , GLY T:22 , CDL T:1269BINDING SITE FOR RESIDUE PEK P 1265
47FC2SOFTWAREPHE N:94 , PRO N:95 , ARG N:96 , MET N:97 , MET N:100 , PHE N:148 , HOH N:3233 , HIS P:9 , THR P:28 , ASN P:50 , TRP P:57 , TRP P:58 , VAL P:61 , GLU P:64 , HIS P:71 , LEU P:79 , GLU P:90 , HOH P:3145BINDING SITE FOR RESIDUE PGV P 1266
48FC3SOFTWAREMET P:54 , TRP P:58 , VAL P:61 , SER P:65 , THR P:66 , GLU P:90 , HIS P:207 , ILE P:210 , THR P:213 , PHE P:214 , ARG P:221 , HIS P:226 , PHE P:227 , THR P:228 , HIS P:231 , HIS P:232 , PHE P:233 , GLY P:234 , CDL P:1270 , HOH P:3221 , HOH P:3357 , HOH S:3137BINDING SITE FOR RESIDUE PGV P 1267
49FC4SOFTWARECDL G:269 , TRP P:99 , TYR P:102 , HIS P:103 , CHD P:1525BINDING SITE FOR RESIDUE PGV P 1268
50FC5SOFTWAREMET P:51 , TYR P:55 , TRP P:58 , ARG P:59 , ILE P:62 , ARG P:63 , PHE P:67 , THR P:213 , LYS P:224 , HIS P:226 , PGV P:1267 , LYS W:8 , THR W:27BINDING SITE FOR RESIDUE CDL P 1270
51FC6SOFTWARECYS S:60 , CYS S:62 , CYS S:82 , CYS S:85BINDING SITE FOR RESIDUE ZN S 99
52FC7SOFTWARELYS C:77 , ARG C:80 , TYR C:81 , ILE C:84 , THR C:95 , TRP C:240 , PHE C:244 , VAL C:247 , PHE C:251 , SER T:2 , ALA T:3 , LYS T:5 , GLY T:6 , HIS T:8 , HOH T:4411BINDING SITE FOR RESIDUE PEK T 263
53FC8SOFTWAREPHE A:282 , ILE A:286 , ASP A:300 , TYR A:304 , SER A:307 , ILE B:74 , ALA B:77 , LEU B:78 , LEU B:81 , TYR B:85 , HOH B:4283 , PGV C:268 , LEU P:127 , LEU P:131 , THR P:134 , LEU P:250 , TYR P:253 , PEK P:1265 , LEU T:23 , SER T:27 , LEU T:30 , CYS T:31 , ASN T:34 , LEU T:37 , HIS T:38 , ARG T:42 , HOH T:4060 , HOH T:4261BINDING SITE FOR RESIDUE CDL T 1269
54FC9SOFTWAREARG P:156 , LYS P:157 , LEU P:160 , PHE P:164 , LEU P:223 , PHE W:1 , HOH W:4222BINDING SITE FOR RESIDUE CHD W 1271
55GC1SOFTWARETYR W:32 , ARG W:33 , MET W:36 , THR W:37BINDING SITE FOR RESIDUE CHD W 1060
56GC2SOFTWARETRP Q:98 , LEU Z:27 , LEU Z:28 , GLY Z:31 , TRP Z:32 , TYR Z:35 , HIS Z:36BINDING SITE FOR RESIDUE DMU Z 1526

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1H:29 -H:64
2H:39 -H:53
3U:29 -U:64
4U:39 -U:53

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Pro A:130 -Pro A:131
2Cys A:498 -Pro A:499
3Gln B:103 -Trp B:104
4Trp C:116 -Pro C:117
5Pro N:130 -Pro N:131
6Cys N:498 -Pro N:499
7Gln O:103 -Trp O:104
8Trp P:116 -Pro P:117

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2EIM)

(-) PROSITE Motifs  (10, 20)

Asymmetric/Biological Unit (10, 20)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COX2_TMPS50999 Cytochrome oxidase subunit II transmembrane region profile.COX2_BOVIN1-91
 
  2B:1-91
O:1-91
2COX1PS50855 Cytochrome oxidase subunit I profile.COX1_BOVIN1-514
 
  2A:1-514
N:1-514
3COX3PS50253 Heme-copper oxidase subunit III family profile.COX3_BOVIN4-261
 
  2C:4-261
P:4-261
4CHCHPS51808 Coiled coil-helix-coiled coil-helix (CHCH) domain profile.CX6B1_BOVIN27-73
 
  2H:26-72
U:26-72
5COX5B_2PS51359 Cytochrome c oxidase subunit Vb, zinc binding domain profile.COX5B_BOVIN32-129
 
  2F:1-98
S:1-98
6COX6APS01329 Cytochrome c oxidase subunit VIa signature.CX6A2_BOVIN67-84
 
  2G:55-72
T:55-72
7COX2_CUAPS50857 Cytochrome oxidase subunit II copper A binding domain profile.COX2_BOVIN92-225
 
  2B:92-225
O:92-225
8COX5B_1PS00848 Cytochrome c oxidase subunit Vb, zinc binding region signature.COX5B_BOVIN100-122
 
  2F:69-91
S:69-91
9COX2PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature.COX2_BOVIN159-207
 
  2B:159-207
O:159-207
10COX1_CUBPS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature.COX1_BOVIN236-291
 
  2A:236-291
N:236-291

(-) Exons   (11, 22)

Asymmetric/Biological Unit (11, 22)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000187781ENSBTAE00000392730chr14:62538824-6253890885COX6C_BOVIN-00--
1.2ENSBTAT000000187782ENSBTAE00000152930chr14:62539837-62539968132COX6C_BOVIN1-37372I:1-36
V:1-36
36
36
1.3ENSBTAT000000187783ENSBTAE00000152932chr14:62540912-62541039128COX6C_BOVIN38-74372I:37-73
V:37-73
37
37
1.4ENSBTAT000000187784ENSBTAE00000382779chr14:62548625-62548744120COX6C_BOVIN-00--

2.1ENSBTAT000000198081ENSBTAE00000161251chr18:46232862-4623280261CX7A1_BOVIN1-550--
2.2ENSBTAT000000198082ENSBTAE00000161252chr18:46232104-4623201887CX7A1_BOVIN6-34292J:1-13
W:1-13
13
13
2.3ENSBTAT000000198083ENSBTAE00000161253chr18:46231883-4623179985CX7A1_BOVIN35-63292J:14-42
W:14-42
29
29
2.4ENSBTAT000000198084ENSBTAE00000161254chr18:46231418-46231281138CX7A1_BOVIN63-80182J:42-58
W:42-58
17
17

3.1ENSBTAT000000229491ENSBTAE00000344359chr21:33835267-33835426160COX5A_BOVIN1-36360--
3.2ENSBTAT000000229492ENSBTAE00000187373chr21:33840320-33840436117COX5A_BOVIN36-75402E:5-32
R:5-32
28
28
3.3ENSBTAT000000229493ENSBTAE00000187374chr21:33842603-33842724122COX5A_BOVIN75-115412E:32-72
R:32-72
41
41
3.4ENSBTAT000000229494ENSBTAE00000187376chr21:33843979-33844143165COX5A_BOVIN116-152372E:73-109
R:73-109
37
37
3.5ENSBTAT000000229495ENSBTAE00000187379chr21:33846054-33846214161COX5A_BOVIN-00--

4.1ENSBTAT000000260021ENSBTAE00000425992chr25:29305227-29305113115CX6A2_BOVIN1-25252G:1-13
T:1-13
13
13
4.2ENSBTAT000000260022ENSBTAE00000211646chr25:29304966-29304830137CX6A2_BOVIN25-70462G:13-58
T:13-58
46
46
4.3ENSBTAT000000260023ENSBTAE00000211652chr25:29304732-29304604129CX6A2_BOVIN71-97272G:59-84
T:59-84
26
26

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:514
 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot  Length:514

    Alignment length:514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
           COX1_BOVIN     1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
               SCOP domains d2eima_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -2eimA00 A:2-514 Cytochrome C Oxidase, chain A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee......hhhhh..............ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) COX1  PDB: A:1-514 UniProt: 1-514                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX1_CUB  PDB: A:236-291 UniProt: 236-291               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2eim A   1 mFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
                            |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                            1-FME                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             

Chain B from PDB  Type:PROTEIN  Length:227
 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
           COX2_BOVIN     1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
               SCOP domains d2eimb2 B:1-90 Mitochondrial cytochrome c oxidase, subunit II                             d2eimb1 B:91-227 Cytochrome c oxidase                                                                                                     SCOP domains
               CATH domains -2eimB01 B:2-91  [code=1.10.287.90, no name defined]                                       2eimB02 B:92-227 Cupredoxins -  blue copper proteins                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeee..eeeeee.....eeeee.....................eeee....eeeeeee....eeeee....eeeee.....eeeee.....eeeee........hhhhh.eeeeeehhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) COX2_TM  PDB: B:1-91 UniProt: 1-91                                                         COX2_CUA  PDB: B:92-225 UniProt: 92-225                                                                                               -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------COX2  PDB: B:159-207 UniProt: 159-207            -------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2eim B   1 mAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
                            1-FME                                                                                                                                                                                                                              

Chain C from PDB  Type:PROTEIN  Length:259
 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
           COX3_BOVIN     3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
               SCOP domains d2eimc_ C: Mitochondrial cytochrome c oxidase, subunit III                                                                                                                                                                                                          SCOP domains
               CATH domains 2eimC01 C:3-70  [code=1.10.287.70, no name defined]                 2eimC02 C:71-261  [code=1.20.120.80, no name defined]                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -COX3  PDB: C:4-261 UniProt: 4-261                                                                                                                                                                                                                                  PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2eim C   3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         

Chain D from PDB  Type:PROTEIN  Length:144
 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:144
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165    
          COX41_BOVIN    26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
               SCOP domains d2eimd_ D: automated matches                                                                                                                     SCOP domains
               CATH domains 2eimD00 D:4-147 Cytochrome C Oxidase, chain D                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhh.ee....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2eim D   4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143    

Chain E from PDB  Type:PROTEIN  Length:105
 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:105
                                    57        67        77        87        97       107       117       127       137       147     
          COX5A_BOVIN    48 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152
               SCOP domains d2eime_ E: Cytochrome c oxidase subunit E                                                                 SCOP domains
               CATH domains 2eimE00 E:5-109  [code=1.25.40.40, no name defined]                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.2  PDB: E:5-32       ----------------------------------------Exon 3.4  PDB: E:73-109               Transcript 3 (1)
           Transcript 3 (2) ---------------------------Exon 3.3  PDB: E:32-72 UniProt: 75-115   ------------------------------------- Transcript 3 (2)
                 2eim E   5 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109
                                    14        24        34        44        54        64        74        84        94       104     

Chain F from PDB  Type:PROTEIN  Length:98
 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:98
                                    41        51        61        71        81        91       101       111       121        
          COX5B_BOVIN    32 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 129
               SCOP domains d2eimf_ F: Cytochrome c oxidase Subunit F                                                          SCOP domains
               CATH domains 2eimF00 F:1-98 Cytochrome C Oxidase, chain F                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhh......................eeee....eeeeee.........eeeeee....ee......eeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------COX5B_1  PDB: F:69-91  ------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) COX5B_2  PDB: F:1-98 UniProt: 32-129                                                               PROSITE (5)
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2eim F   1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH  98
                                    10        20        30        40        50        60        70        80        90        

Chain G from PDB  Type:PROTEIN  Length:84
 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:84
                                    22        32        42        52        62        72        82        92    
          CX6A2_BOVIN    13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  96
               SCOP domains d2eimg_ G: Mitochondrial cytochrome c oxidase subunit VIa                            SCOP domains
               CATH domains 2eimG00 G:1-84 Cytochrome C Oxidase, chain G                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh............................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ------------------------------------------------------COX6A  PDB: G:55-7------------ PROSITE (6)
           Transcript 4 (1) Exon 4.1     ---------------------------------------------Exon 4.3  PDB: G:59-84     Transcript 4 (1)
           Transcript 4 (2) ------------Exon 4.2  PDB: G:13-58 UniProt: 25-70         -------------------------- Transcript 4 (2)
                 2eim G   1 ASAAKGDHGGtGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  84
                                    10|       20        30        40        50        60        70        80    
                                     11-TPO                                                                     

Chain H from PDB  Type:PROTEIN  Length:79
 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:79
                                    17        27        37        47        57        67        77         
          CX6B1_BOVIN     8 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  86
               SCOP domains d2eimh_ H: automated matches                                                    SCOP domains
               CATH domains 2eimH00 H:7-85 Cytochrome C oxidase subunit h                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------CHCH  PDB: H:26-72 UniProt: 27-73              ------------- PROSITE (4)
                 Transcript ------------------------------------------------------------------------------- Transcript
                 2eim H   7 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  85
                                    16        26        36        46        56        66        76         

Chain I from PDB  Type:PROTEIN  Length:73
 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:73
                                    11        21        31        41        51        61        71   
          COX6C_BOVIN     2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  74
               SCOP domains d2eimi_ I: Mitochondrial cytochrome c oxidase subunit VIc                 SCOP domains
               CATH domains -2eimI00 I:2-73 Cytochrome C Oxidase, chain I                             CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: I:1-36 UniProt: 1-37 Exon 1.3  PDB: I:37-73 UniProt: 38-74 Transcript 1
                 2eim I   1 sTALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  73
                            |       10        20        30        40        50        60        70   
                            1-SAC                                                                    

Chain J from PDB  Type:PROTEIN  Length:58
 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:58
                                    31        41        51        61        71        
          CX7A1_BOVIN    22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK  79
               SCOP domains d2eimj_ J: Mitochondrial cytochrome c oxidase subunit VIIa SCOP domains
               CATH domains 2eimJ00 J:1-58 Cytochrome C Oxidase, chain J               CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2     Exon 2.3  PDB: J:14-42       ---------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.4          Transcript 2 (2)
                 2eim J   1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK  58
                                    10        20        30        40        50        

Chain K from PDB  Type:PROTEIN  Length:49
 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:49
                                    39        49        59        69         
          COX7B_BOVIN    30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  78
               SCOP domains d2eimk_ K: automated matches                      SCOP domains
               CATH domains 2eimK00 K:6-54 Cytochrome C Oxidase, chain K      CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 2eim K   6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  54
                                    15        25        35        45         

Chain L from PDB  Type:PROTEIN  Length:46
 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot  Length:63

    Alignment length:46
                                    27        37        47        57      
          COX7C_BOVIN    18 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  63
               SCOP domains d2eiml_ L:                                     SCOP domains
               CATH domains 2eimL00 L:2-47 Cytochrome C Oxidase, chain L   CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 2eim L   2 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  47
                                    11        21        31        41      

Chain M from PDB  Type:PROTEIN  Length:43
 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:43
                                    34        44        54        64   
          COX8B_BOVIN    25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  67
               SCOP domains d2eimm_ M: automated matches                SCOP domains
               CATH domains 2eimM00 M:1-43                              CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 2eim M   1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  43
                                    10        20        30        40   

Chain N from PDB  Type:PROTEIN  Length:514
 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot  Length:514

    Alignment length:514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
           COX1_BOVIN     1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
               SCOP domains d2eimn_ N: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -2eimN00 N:2-514 Cytochrome C Oxidase, chain A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee......hhhhh..............ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) COX1  PDB: N:1-514 UniProt: 1-514                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX1_CUB  PDB: N:236-291 UniProt: 236-291               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2eim N   1 mFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
                            1-FME                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             

Chain O from PDB  Type:PROTEIN  Length:227
 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
           COX2_BOVIN     1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
               SCOP domains d2eimo2 O:1-90 Mitochondrial cytochrome c oxidase, subunit II                             d2eimo1 O:91-227 Cytochrome c oxidase                                                                                                     SCOP domains
               CATH domains -2eimO01 O:2-91  [code=1.10.287.90, no name defined]                                       2eimO02 O:92-227 Cupredoxins -  blue copper proteins                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeee..eeeeee.....eeeee.....................eeee....eeeeeee....eeeee....eeeee.....eeeee.....eeeee........hhhhh.eeeeeehhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) COX2_TM  PDB: O:1-91 UniProt: 1-91                                                         COX2_CUA  PDB: O:92-225 UniProt: 92-225                                                                                               -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------COX2  PDB: O:159-207 UniProt: 159-207            -------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2eim O   1 mAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
                            1-FME                                                                                                                                                                                                                              

Chain P from PDB  Type:PROTEIN  Length:259
 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
           COX3_BOVIN     3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
               SCOP domains d2eimp_ P: Mitochondrial cytochrome c oxidase, subunit III                                                                                                                                                                                                          SCOP domains
               CATH domains 2eimP01 P:3-70  [code=1.10.287.70, no name defined]                 2eimP02 P:71-261  [code=1.20.120.80, no name defined]                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -COX3  PDB: P:4-261 UniProt: 4-261                                                                                                                                                                                                                                  PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2eim P   3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         

Chain Q from PDB  Type:PROTEIN  Length:144
 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:144
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165    
          COX41_BOVIN    26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
               SCOP domains d2eimq_ Q: automated matches                                                                                                                     SCOP domains
               CATH domains 2eimQ00 Q:4-147 Cytochrome C Oxidase, chain D                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhh.ee....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2eim Q   4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143    

Chain R from PDB  Type:PROTEIN  Length:105
 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:105
                                    57        67        77        87        97       107       117       127       137       147     
          COX5A_BOVIN    48 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152
               SCOP domains d2eimr_ R: Cytochrome c oxidase subunit E                                                                 SCOP domains
               CATH domains 2eimR00 R:5-109  [code=1.25.40.40, no name defined]                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.2  PDB: R:5-32       ----------------------------------------Exon 3.4  PDB: R:73-109               Transcript 3 (1)
           Transcript 3 (2) ---------------------------Exon 3.3  PDB: R:32-72 UniProt: 75-115   ------------------------------------- Transcript 3 (2)
                 2eim R   5 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109
                                    14        24        34        44        54        64        74        84        94       104     

Chain S from PDB  Type:PROTEIN  Length:98
 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:98
                                    41        51        61        71        81        91       101       111       121        
          COX5B_BOVIN    32 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 129
               SCOP domains d2eims_ S: Cytochrome c oxidase Subunit F                                                          SCOP domains
               CATH domains 2eimS00 S:1-98 Cytochrome C Oxidase, chain F                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhh....................eeee....eeeeee.........eeeeee....ee......eeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------COX5B_1  PDB: S:69-91  ------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) COX5B_2  PDB: S:1-98 UniProt: 32-129                                                               PROSITE (5)
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2eim S   1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH  98
                                    10        20        30        40        50        60        70        80        90        

Chain T from PDB  Type:PROTEIN  Length:84
 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:84
                                    22        32        42        52        62        72        82        92    
          CX6A2_BOVIN    13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  96
               SCOP domains d2eimt_ T: Mitochondrial cytochrome c oxidase subunit VIa                            SCOP domains
               CATH domains 2eimT00 T:1-84 Cytochrome C Oxidase, chain G                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh............................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ------------------------------------------------------COX6A  PDB: T:55-7------------ PROSITE (6)
           Transcript 4 (1) Exon 4.1     ---------------------------------------------Exon 4.3  PDB: T:59-84     Transcript 4 (1)
           Transcript 4 (2) ------------Exon 4.2  PDB: T:13-58 UniProt: 25-70         -------------------------- Transcript 4 (2)
                 2eim T   1 ASAAKGDHGGtGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  84
                                    10|       20        30        40        50        60        70        80    
                                     11-TPO                                                                     

Chain U from PDB  Type:PROTEIN  Length:79
 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:79
                                    17        27        37        47        57        67        77         
          CX6B1_BOVIN     8 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  86
               SCOP domains d2eimu_ U: automated matches                                                    SCOP domains
               CATH domains 2eimU00 U:7-85 Cytochrome C oxidase subunit h                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------CHCH  PDB: U:26-72 UniProt: 27-73              ------------- PROSITE (4)
                 Transcript ------------------------------------------------------------------------------- Transcript
                 2eim U   7 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  85
                                    16        26        36        46        56        66        76         

Chain V from PDB  Type:PROTEIN  Length:73
 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:73
                                    11        21        31        41        51        61        71   
          COX6C_BOVIN     2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  74
               SCOP domains d2eimv_ V: Mitochondrial cytochrome c oxidase subunit VIc                 SCOP domains
               CATH domains -2eimV00 V:2-73 Cytochrome C Oxidase, chain I                             CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: V:1-36 UniProt: 1-37 Exon 1.3  PDB: V:37-73 UniProt: 38-74 Transcript 1
                 2eim V   1 sTALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  73
                            |       10        20        30        40        50        60        70   
                            1-SAC                                                                    

Chain W from PDB  Type:PROTEIN  Length:58
 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:58
                                    31        41        51        61        71        
          CX7A1_BOVIN    22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK  79
               SCOP domains d2eimw_ W: Mitochondrial cytochrome c oxidase subunit VIIa SCOP domains
               CATH domains 2eimW00 W:1-58 Cytochrome C Oxidase, chain J               CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2     Exon 2.3  PDB: W:14-42       ---------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.4          Transcript 2 (2)
                 2eim W   1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK  58
                                    10        20        30        40        50        

Chain X from PDB  Type:PROTEIN  Length:49
 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:49
                                    39        49        59        69         
          COX7B_BOVIN    30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  78
               SCOP domains d2eimx_ X: automated matches                      SCOP domains
               CATH domains 2eimX00 X:6-54 Cytochrome C Oxidase, chain K      CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 2eim X   6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  54
                                    15        25        35        45         

Chain Y from PDB  Type:PROTEIN  Length:46
 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot  Length:63

    Alignment length:46
                                    27        37        47        57      
          COX7C_BOVIN    18 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  63
               SCOP domains d2eimy_ Y:                                     SCOP domains
               CATH domains 2eimY00 Y:2-47 Cytochrome C Oxidase, chain L   CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 2eim Y   2 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  47
                                    11        21        31        41      

Chain Z from PDB  Type:PROTEIN  Length:43
 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:43
                                    34        44        54        64   
          COX8B_BOVIN    25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  67
               SCOP domains d2eimz_ Z: automated matches                SCOP domains
               CATH domains 2eimZ00 Z:1-43                              CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 2eim Z   1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  43
                                    10        20        30        40   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (14, 28)

Asymmetric/Biological Unit

(-) CATH Domains  (15, 30)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EIM)

(-) Gene Ontology  (32, 127)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,N   (COX1_BOVIN | P00396)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0009060    aerobic respiration    The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006119    oxidative phosphorylation    The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain B,O   (COX2_BOVIN | P68530)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0022900    electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain C,P   (COX3_BOVIN | P00415)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0015002    heme-copper terminal oxidase activity    Catalysis of the four-electron reduction of dioxygen (O2) to water, coupled to generation of a proton electrochemical gradient across a membrane.
biological process
    GO:0019646    aerobic electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to oxygen to generate a transmembrane electrochemical gradient.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0008535    respiratory chain complex IV assembly    The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms.
    GO:0022904    respiratory electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain D,Q   (COX41_BOVIN | P00423)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006123    mitochondrial electron transport, cytochrome c to oxygen    The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0031966    mitochondrial membrane    Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain E,R   (COX5A_BOVIN | P00426)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006123    mitochondrial electron transport, cytochrome c to oxygen    The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain F,S   (COX5B_BOVIN | P00428)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005740    mitochondrial envelope    The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain G,T   (CX6A2_BOVIN | P07471)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain H,U   (CX6B1_BOVIN | P00429)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005758    mitochondrial intermembrane space    The region between the inner and outer lipid bilayers of the mitochondrial envelope.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain I,V   (COX6C_BOVIN | P04038)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain J,W   (CX7A1_BOVIN | P07470)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005746    mitochondrial respiratory chain    The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain K,X   (COX7B_BOVIN | P13183)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:0007417    central nervous system development    The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005746    mitochondrial respiratory chain    The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain L,Y   (COX7C_BOVIN | P00430)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain M,Z   (COX8B_BOVIN | P10175)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006123    mitochondrial electron transport, cytochrome c to oxygen    The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COX1_BOVIN | P003961occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX2_BOVIN | P685301occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX3_BOVIN | P004151occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5iy5 5luf 5xdq
        COX41_BOVIN | P004231occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX5A_BOVIN | P004261occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX5B_BOVIN | P004281occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX6C_BOVIN | P040381occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX7B_BOVIN | P131831occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX7C_BOVIN | P004301occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX8B_BOVIN | P101751occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        CX6A2_BOVIN | P074711occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        CX6B1_BOVIN | P004291occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        CX7A1_BOVIN | P074701occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq

(-) Related Entries Specified in the PDB File

1occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2ein 2occ