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(-) Description

Title :  BOVINE HEART CYTOCHROME C OXIDASE IN THE CARBON MONOXIDE-BOUND MIXED-VALENCE STATE AT 1.68 ANGSTROM RESOLUTION (50 K)
 
Authors :  J. Baba, A. Shimada, E. Yamashita, K. Shinzawa-Ito, S. Yoshikawa, T. Ts
Date :  11 Mar 16  (Deposition) - 22 Mar 17  (Release) - 22 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.68
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L,M  (1x)
Biol. Unit 2:  N,O,P,Q,R,S,T,U,V,W,X,Y,Z  (1x)
Keywords :  Oxidoreductase, Proton Pump, Heme, Respiratory Chain (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Shimada, J. Baba, E. Yamashita, K. Shinzawa-Ito, S. Yoshikawa, T. Tsukihara
Bovine Heart Cytochrome C Oxidase In The Carbon Monoxide-Bound Mixed-Valence State At 1. 68 Angstrom Resolution (50 K)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYTOCHROME C OXIDASE SUBUNIT 1
    ChainsA, N
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE I
 
Molecule 2 - CYTOCHROME C OXIDASE SUBUNIT 2
    ChainsB, O
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE II
 
Molecule 3 - CYTOCHROME C OXIDASE SUBUNIT 3
    ChainsC, P
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE III
 
Molecule 4 - CYTOCHROME C OXIDASE SUBUNIT 4 ISOFORM 1, MITOCHONDRIAL
    ChainsD, Q
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE IV,CYTOCHROME C OXIDASE SUBUNIT IV ISOFORM 1,COX IV-1
 
Molecule 5 - CYTOCHROME C OXIDASE SUBUNIT 5A, MITOCHONDRIAL
    ChainsE, R
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VA
 
Molecule 6 - CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL
    ChainsF, S
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VIA,CYTOCHROME C OXIDASE POLYPEPTIDE VB
 
Molecule 7 - CYTOCHROME C OXIDASE SUBUNIT 6A2, MITOCHONDRIAL
    ChainsG, T
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VIA-HEART,COXVIAH, CYTOCHROME C OXIDASE POLYPEPTIDE VIB
 
Molecule 8 - CYTOCHROME C OXIDASE SUBUNIT 6B1
    ChainsH, U
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VII,CYTOCHROME C OXIDASE SUBUNIT AED,CYTOCHROME C OXIDASE SUBUNIT VIB ISOFORM 1,COX VIB-1
 
Molecule 9 - CYTOCHROME C OXIDASE SUBUNIT 6C
    ChainsI, V
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VIC,CYTOCHROME C OXIDASE SUBUNIT STA
 
Molecule 10 - CYTOCHROME C OXIDASE SUBUNIT 7A1, MITOCHONDRIAL
    ChainsJ, W
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE SUBUNIT VIIIC,VIIIC,CYTOCHROME C OXIDASE SUBUNIT VIIA-HEART,CYTOCHROME C OXIDASE SUBUNIT VIIA-H, CYTOCHROME C OXIDASE SUBUNIT VIIA-MUSCLE,CYTOCHROME C OXIDASE SUBUNIT VIIA-M
 
Molecule 11 - CYTOCHROME C OXIDASE SUBUNIT 7B, MITOCHONDRIAL
    ChainsK, X
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VIIB,IHQ
 
Molecule 12 - CYTOCHROME C OXIDASE SUBUNIT 7C, MITOCHONDRIAL
    ChainsL, Y
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VIIIA,CYTOCHROME C OXIDASE POLYPEPTIDE VIIC
 
Molecule 13 - CYTOCHROME C OXIDASE SUBUNIT 8B, MITOCHONDRIAL
    ChainsM, Z
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VIII-HEART,CYTOCHROME C OXIDASE SUBUNIT 8-1,CYTOCHROME C OXIDASE SUBUNIT 8H,IX,VIIIB

 Structural Features

(-) Chains, Units

  1234567891011121314151617181920212223242526
Asymmetric Unit ABCDEFGHIJKLMNOPQRSTUVWXYZ
Biological Unit 1 (1x)ABCDEFGHIJKLM             
Biological Unit 2 (1x)             NOPQRSTUVWXYZ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (18, 110)

Asymmetric Unit (18, 110)
No.NameCountTypeFull Name
1CDL4Ligand/IonCARDIOLIPIN
2CHD8Ligand/IonCHOLIC ACID
3CMO2Ligand/IonCARBON MONOXIDE
4CU2Ligand/IonCOPPER (II) ION
5CUA2Ligand/IonDINUCLEAR COPPER ION
6DMU4Ligand/IonDECYL-BETA-D-MALTOPYRANOSIDE
7EDO48Ligand/Ion1,2-ETHANEDIOL
8FME4Mod. Amino AcidN-FORMYLMETHIONINE
9HEA4Ligand/IonHEME-A
10MG2Ligand/IonMAGNESIUM ION
11NA2Ligand/IonSODIUM ION
12PEK6Ligand/Ion(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
13PGV8Ligand/Ion(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
14PSC2Ligand/Ion(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
15SAC2Mod. Amino AcidN-ACETYL-SERINE
16TGL6Ligand/IonTRISTEAROYLGLYCEROL
17TPO2Mod. Amino AcidPHOSPHOTHREONINE
18ZN2Ligand/IonZINC ION
Biological Unit 1 (14, 54)
No.NameCountTypeFull Name
1CDL2Ligand/IonCARDIOLIPIN
2CHD5Ligand/IonCHOLIC ACID
3CMO1Ligand/IonCARBON MONOXIDE
4CU-1Ligand/IonCOPPER (II) ION
5CUA1Ligand/IonDINUCLEAR COPPER ION
6DMU2Ligand/IonDECYL-BETA-D-MALTOPYRANOSIDE
7EDO25Ligand/Ion1,2-ETHANEDIOL
8FME2Mod. Amino AcidN-FORMYLMETHIONINE
9HEA2Ligand/IonHEME-A
10MG-1Ligand/IonMAGNESIUM ION
11NA-1Ligand/IonSODIUM ION
12PEK3Ligand/Ion(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
13PGV5Ligand/Ion(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
14PSC1Ligand/Ion(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
15SAC1Mod. Amino AcidN-ACETYL-SERINE
16TGL3Ligand/IonTRISTEAROYLGLYCEROL
17TPO1Mod. Amino AcidPHOSPHOTHREONINE
18ZN-1Ligand/IonZINC ION
Biological Unit 2 (14, 48)
No.NameCountTypeFull Name
1CDL2Ligand/IonCARDIOLIPIN
2CHD3Ligand/IonCHOLIC ACID
3CMO1Ligand/IonCARBON MONOXIDE
4CU-1Ligand/IonCOPPER (II) ION
5CUA1Ligand/IonDINUCLEAR COPPER ION
6DMU2Ligand/IonDECYL-BETA-D-MALTOPYRANOSIDE
7EDO23Ligand/Ion1,2-ETHANEDIOL
8FME2Mod. Amino AcidN-FORMYLMETHIONINE
9HEA2Ligand/IonHEME-A
10MG-1Ligand/IonMAGNESIUM ION
11NA-1Ligand/IonSODIUM ION
12PEK3Ligand/Ion(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
13PGV3Ligand/Ion(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
14PSC1Ligand/Ion(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
15SAC1Mod. Amino AcidN-ACETYL-SERINE
16TGL3Ligand/IonTRISTEAROYLGLYCEROL
17TPO1Mod. Amino AcidPHOSPHOTHREONINE
18ZN-1Ligand/IonZINC ION

(-) Sites  (102, 102)

Asymmetric Unit (102, 102)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREALA A:24 , GLY A:27 , MET A:28 , THR A:31 , SER A:34 , ILE A:37 , ARG A:38 , TYR A:54 , VAL A:58 , HIS A:61 , ALA A:62 , MET A:65 , ILE A:66 , VAL A:70 , ILE A:73 , GLY A:125 , TRP A:126 , TYR A:371 , PHE A:377 , HIS A:378 , SER A:382 , VAL A:386 , PHE A:393 , MET A:417 , PHE A:425 , GLN A:428 , ARG A:438 , ARG A:439 , TYR A:440 , VAL A:465 , MET A:468 , HOH A:706 , HOH A:732 , HOH A:738 , HOH A:745binding site for residue HEA A 601
002AC2SOFTWARETRP A:126 , TRP A:236 , VAL A:243 , TYR A:244 , HIS A:290 , HIS A:291 , THR A:309 , ILE A:312 , THR A:316 , GLY A:317 , GLY A:352 , LEU A:353 , GLY A:355 , ILE A:356 , LEU A:358 , ALA A:359 , ASP A:364 , HIS A:368 , VAL A:373 , HIS A:376 , PHE A:377 , VAL A:380 , LEU A:381 , ARG A:438 , CMO A:606 , HOH A:740 , HOH A:753 , HOH A:804 , HOH A:817 , ILE B:34binding site for residue HEA A 602
003AC3SOFTWAREHIS A:240 , HIS A:290 , HIS A:291 , CMO A:606binding site for residue CU A 603
004AC4SOFTWAREHIS A:368 , ASP A:369 , GLU B:198 , HOH B:410 , HOH B:459 , HOH B:563binding site for residue MG A 604
005AC5SOFTWAREGLU A:40 , GLY A:45 , SER A:441 , HOH A:836binding site for residue NA A 605
006AC6SOFTWAREHIS A:240 , VAL A:243 , HIS A:291 , HEA A:602 , CU A:603binding site for residue CMO A 606
007AC7SOFTWAREASN A:406 , THR A:408 , HOH A:705 , HOH A:727 , HOH A:905 , PHE K:9 , HIS K:10 , HOH K:225 , ALA M:16 , LEU M:19 , SER M:20 , HOH M:226binding site for residue PGV A 607
008AC8SOFTWAREPHE A:94 , PRO A:95 , ARG A:96 , MET A:97 , HOH A:802 , HIS C:9 , GLY C:20 , ALA C:24 , ASN C:50 , TRP C:57 , TRP C:58 , GLU C:64 , HIS C:71 , LEU C:79 , GLY C:82 , PEK C:302 , HOH C:455binding site for residue PGV A 608
009AC9SOFTWARETYR A:260 , TYR A:261 , HIS A:395 , TRP A:494 , HOH A:731 , HOH A:757 , ILE M:1binding site for residue EDO A 609
010AD1SOFTWARELEU A:483 , VAL A:485 , THR A:488 , TRP A:494 , CYS A:498 , HOH A:707 , HOH A:854binding site for residue EDO A 610
011AD2SOFTWARETYR A:510 , HOH A:713 , HOH A:847 , PRO F:36 , LYS F:37 , THR F:39 , LEU F:48binding site for residue EDO A 611
012AD3SOFTWAREARG A:5 , ASN A:11 , LYS A:13 , ASP A:14 , TRP A:81 , PRO A:500 , TYR A:502 , ASN L:10binding site for residue EDO A 612
013AD4SOFTWAREGLY A:269 , MET A:271 , GLY A:272 , HOH A:871 , GLN B:59 , HOH B:423binding site for residue EDO A 613
014AD5SOFTWAREHOH L:233binding site for residue EDO A 614
015AD6SOFTWARETYR A:304 , CDL T:102binding site for residue EDO A 615
016AD7SOFTWAREPHE A:346 , TYR A:379 , ASN A:422 , PHE A:430 , LEU A:433 , LEU B:7 , LEU B:28 , VAL B:31 , PHE B:32 , SER B:35 , SER B:36 , LEU B:39 , HOH B:612binding site for residue TGL B 301
017AD8SOFTWAREHIS B:161 , CYS B:196 , GLU B:198 , CYS B:200 , HIS B:204 , MET B:207binding site for residue CUA B 302
018AD9SOFTWAREPHE A:321 , HIS A:328 , HOH A:846 , ILE B:41 , HIS B:52 , MET B:56 , ASP B:57 , VAL B:61 , TRP B:65 , HOH B:458 , HOH B:475 , ASP E:8 , LEU E:41 , HOH E:344 , HOH E:354 , ARG I:10 , HOH I:126binding site for residue PSC B 303
019AE1SOFTWAREMET A:271 , TRP A:275 , HOH A:871 , GLN B:59 , GLU B:62 , THR B:63 , HOH B:423 , HOH B:454 , PEK P:303 , EDO S:104 , ARG T:14 , ARG T:17 , PHE T:21 , GLY T:22binding site for residue CHD B 304
020AE2SOFTWARETYR A:447 , HOH A:780 , ALA B:2 , GLN B:10 , LEU B:136 , PRO B:166 , TYR B:193 , HOH B:474binding site for residue EDO B 305
021AE3SOFTWAREHIS B:102 , GLU B:157 , ASP B:158 , HOH B:533binding site for residue EDO B 306
022AE4SOFTWAREGLU B:157 , HOH B:428 , HOH B:449 , HOH B:470 , EDO C:309binding site for residue EDO B 307
023AE5SOFTWARETYR B:40 , ALA I:24binding site for residue EDO B 308
024AE6SOFTWAREHIS A:233 , ASP A:300 , THR A:301 , TYR A:304 , HOH A:720 , TRP C:99 , HIS C:103 , HOH C:469 , HOH C:488 , LEU P:127binding site for residue CHD C 301
025AE7SOFTWAREPGV A:608 , HOH A:959 , TRP C:34 , TYR C:181 , TYR C:182 , ALA C:184 , PHE C:186 , THR C:187 , ILE C:188 , PHE C:198 , GLY C:202 , DMU C:308 , TRP G:62 , THR G:68 , PHE G:69 , PHE G:70 , HIS G:71 , ASN G:76 , HOH G:239binding site for residue PEK C 302
026AE8SOFTWARELYS C:157 , HIS C:158 , GLN C:161 , ALA F:1 , ARG G:17 , CDL G:101 , CHD G:102 , GLN O:59 , HOH O:470binding site for residue PEK C 303
027AE9SOFTWAREMET C:54 , TRP C:58 , VAL C:61 , SER C:65 , THR C:66 , HIS C:71 , LEU C:206 , HIS C:207 , ILE C:210 , PHE C:214 , ARG C:221 , HIS C:226 , PHE C:227 , THR C:228 , HIS C:231 , HIS C:232 , PHE C:233 , GLY C:234 , CDL C:306 , HOH C:415 , HOH C:427 , HOH C:490 , HOH C:554 , HOH F:240binding site for residue PGV C 304
028AF1SOFTWARETRP C:99 , TYR C:102 , HIS C:103 , ALA C:107 , HOH C:406 , HOH C:407 , HOH C:479 , HOH C:507 , HOH C:557 , ASN H:24 , HOH H:134 , CDL T:102binding site for residue PGV C 305
029AF2SOFTWAREMET C:51 , TYR C:55 , TRP C:58 , ARG C:59 , ILE C:62 , ARG C:63 , PHE C:67 , THR C:213 , PHE C:220 , LYS C:224 , HIS C:226 , PGV C:304 , HOH C:474 , HOH C:511 , HOH C:513 , HOH C:559binding site for residue CDL C 306
030AF3SOFTWAREARG C:156 , LEU C:160 , GLN C:161 , PHE C:219 , PHE J:1binding site for residue CHD C 307
031AF4SOFTWARETRP C:34 , MET C:40 , PEK C:302 , HOH C:403 , HOH C:464 , SER G:61 , TRP G:62 , GLY G:63binding site for residue DMU C 308
032AF5SOFTWAREGLY B:177 , EDO B:307 , HOH B:449 , GLU C:111 , EDO C:312 , HOH C:401 , HOH H:138binding site for residue EDO C 309
033AF6SOFTWARETRP C:146 , SER C:150 , HIS C:158 , HOH C:426 , ALA F:1 , ARG G:17binding site for residue EDO C 310
034AF7SOFTWAREGLY B:177 , GLU C:111 , EDO C:309 , HOH C:401 , TRP H:68 , TRP H:72 , HOH H:132binding site for residue EDO C 312
035AF8SOFTWARETRP A:334 , LEU A:342 , GLY A:343 , VAL A:419 , HOH A:708 , LEU B:39 , THR B:47 , HOH B:556 , HOH B:572 , HOH B:601 , ARG D:73 , TRP D:78 , EDO D:203 , HOH D:301 , HOH D:385 , ARG I:16 , HOH K:243binding site for residue TGL D 201
036AF9SOFTWARELYS D:63 , ARG E:30binding site for residue EDO D 202
037AG1SOFTWARETRP A:334 , TGL D:201 , HOH D:411 , HOH D:444binding site for residue EDO D 203
038AG2SOFTWARETYR E:18 , LYS E:21 , GLU E:28 , HOH E:306binding site for residue EDO E 201
039AG3SOFTWAREHOH B:414 , PRO E:77 , HIS E:78 , HOH E:305 , HOH E:326 , HOH E:342binding site for residue EDO E 202
040AG4SOFTWAREARG E:53 , ARG E:57 , HOH E:389binding site for residue EDO E 203
041AG5SOFTWARECYS F:60 , CYS F:62 , CYS F:82 , CYS F:85binding site for residue ZN F 101
042AG6SOFTWARETHR A:490 , SER F:67 , THR F:68 , VAL F:69 , TRP F:71 , HOH F:227 , HOH F:244 , HOH F:273binding site for residue EDO F 102
043AG7SOFTWAREHIS C:231 , ASP F:9 , GLU F:17 , HOH F:213 , HOH F:234binding site for residue EDO F 103
044AG8SOFTWAREASN C:125 , LEU C:127 , LEU C:131 , PEK C:303 , SER G:27 , LEU G:30 , CYS G:31 , ASN G:34 , LEU G:37 , HIS G:38 , PEK G:103 , HOH G:222 , PHE N:282 , ILE N:286 , ASP N:300 , SER N:307 , ILE N:311 , ALA O:77 , LEU O:78 , LEU O:81 , TYR O:85 , HOH O:530binding site for residue CDL G 101
045AG9SOFTWAREPEK C:303 , ARG G:14 , ARG G:17 , PHE G:21 , GLY G:22 , HOH G:203 , HOH G:204 , HOH G:211 , HOH G:229 , MET N:271 , TRP N:275 , GLU O:62 , THR O:63binding site for residue CHD G 102
046AH1SOFTWARESER G:2 , ALA G:3 , HIS G:8 , CDL G:101 , PGV G:104 , HOH G:219 , TYR P:81 , ILE P:84 , THR P:95 , PHE P:98 , TRP P:240 , VAL P:247 , PHE P:251binding site for residue PEK G 103
047AH2SOFTWAREALA G:1 , PEK G:103 , HOH G:201 , HOH G:206 , HOH G:212 , HOH G:218 , HOH G:286 , ASP N:298 , THR P:95 , TRP P:99 , HIS P:103 , ALA P:107 , CHD P:301 , HOH P:543 , ASN U:22binding site for residue PGV G 104
048AH3SOFTWAREGLY C:120 , ALA G:46 , PHE G:47 , ILE G:48 , LEU G:53 , ARG G:54 , HOH G:225binding site for residue EDO G 105
049AH4SOFTWARELEU A:7 , TYR J:32 , ARG J:33 , THR J:37 , LEU J:40binding site for residue CHD J 101
050AH5SOFTWARETHR A:17 , LEU A:18 , TRP A:25 , PHE A:400 , ILE L:11 , PRO L:12 , PHE L:13 , SER L:14 , ARG L:20 , MET L:24 , PHE L:28 , PHE L:29 , SER L:31 , HOH L:238 , HOH L:241 , HOH L:245binding site for residue TGL L 101
051AH6SOFTWARETRP D:98 , LEU M:27 , LEU M:28 , GLY M:31 , TRP M:32 , TYR M:35 , HIS M:36 , HOH M:201binding site for residue DMU M 101
052AH7SOFTWAREARG L:41 , TRP M:32 , HIS M:36 , TYR M:40 , HOH M:228binding site for residue EDO M 102
053AH8SOFTWAREGLY N:27 , MET N:28 , THR N:31 , SER N:34 , ILE N:37 , ARG N:38 , TYR N:54 , VAL N:58 , HIS N:61 , ALA N:62 , MET N:65 , ILE N:66 , MET N:69 , VAL N:70 , ILE N:73 , GLY N:125 , TRP N:126 , TYR N:371 , PHE N:377 , HIS N:378 , SER N:382 , VAL N:386 , PHE N:393 , PHE N:425 , GLN N:428 , ARG N:438 , ARG N:439 , SER N:461 , VAL N:465 , MET N:468 , HOH N:713 , HOH N:731 , HOH N:736 , HOH N:820binding site for residue HEA N 601
054AH9SOFTWARETRP N:126 , TRP N:236 , VAL N:243 , TYR N:244 , HIS N:290 , HIS N:291 , THR N:309 , ILE N:312 , ALA N:313 , THR N:316 , GLY N:317 , THR N:349 , GLY N:352 , LEU N:353 , GLY N:355 , ILE N:356 , LEU N:358 , ALA N:359 , ASP N:364 , HIS N:368 , VAL N:373 , HIS N:376 , PHE N:377 , VAL N:380 , LEU N:381 , ARG N:438 , CMO N:606 , HOH N:718 , HOH N:735 , HOH N:743 , HOH N:768 , ILE O:34binding site for residue HEA N 602
055AI1SOFTWAREHIS N:240 , HIS N:290 , HIS N:291 , CMO N:606binding site for residue CU N 603
056AI2SOFTWAREHIS N:368 , ASP N:369 , GLU O:198 , HOH O:406 , HOH O:466 , HOH O:550binding site for residue MG N 604
057AI3SOFTWAREGLU N:40 , GLY N:45 , SER N:441 , HOH N:870binding site for residue NA N 605
058AI4SOFTWAREHIS N:240 , VAL N:243 , HIS N:291 , HEA N:602 , CU N:603binding site for residue CMO N 606
059AI5SOFTWARETYR N:379 , ASN N:422 , PHE N:426 , HIS N:429 , LEU N:433 , LEU O:7 , GLY O:8 , LEU O:28 , PHE O:32 , HOH O:592 , ARG V:43binding site for residue TGL N 607
060AI6SOFTWAREASN N:406 , THR N:408 , TRP N:409 , ILE N:412 , HOH N:707 , HOH N:811 , HOH N:856 , PHE Q:87 , PHE X:9 , HIS X:10 , HOH X:216 , GLN Z:15 , LEU Z:19 , SER Z:20 , HOH Z:218binding site for residue PGV N 608
061AI7SOFTWAREPHE N:94 , PRO N:95 , ARG N:96 , MET N:97 , HOH N:766 , HIS P:9 , GLY P:20 , THR P:28 , ASN P:50 , TRP P:57 , TRP P:58 , VAL P:61 , GLU P:64 , HIS P:71 , LEU P:79 , GLY P:82 , PEK P:302 , HOH P:454binding site for residue PGV N 609
062AI8SOFTWARETYR N:260 , TYR N:261 , HIS N:395 , TRP N:494 , HOH N:739 , HOH N:780binding site for residue EDO N 610
063AI9SOFTWAREHIS N:256 , LYS N:265 , THR N:490 , ASN N:491 , HOH N:764 , HOH N:846 , HOH N:871 , HOH N:873 , EDO S:102binding site for residue EDO N 611
064AJ1SOFTWARETHR N:484 , VAL N:485 , ASP N:486 , HOH N:705 , ILE Z:1 , THR Z:2binding site for residue EDO N 612
065AJ2SOFTWARELEU N:483 , THR N:484 , VAL N:485 , TRP N:494 , GLY N:497 , CYS N:498 , HOH N:875 , TYR Q:11 , HOH Q:348binding site for residue EDO N 613
066AJ3SOFTWAREMET N:71 , ILE N:75 , GLY N:76 , SER N:157 , EDO N:616 , HOH N:709 , HOH N:722 , HOH N:775binding site for residue EDO N 615
067AJ4SOFTWARETYR N:19 , ASN N:80 , ASN N:98 , GLY N:160 , PHE N:164 , EDO N:615 , HOH N:709 , HOH N:722binding site for residue EDO N 616
068AJ5SOFTWAREASN N:496 , THR N:504 , PHE N:505 , GLU N:507 , HOH N:706 , HOH N:782 , HOH N:866 , HOH N:915 , TRP S:73binding site for residue EDO N 617
069AJ6SOFTWAREHIS O:161 , CYS O:196 , GLU O:198 , CYS O:200 , HIS O:204 , MET O:207binding site for residue CUA O 301
070AJ7SOFTWAREPHE N:321 , HIS N:328 , ILE O:41 , HIS O:52 , MET O:56 , ASP O:57 , TRP O:65 , GLU R:6 , THR R:7 , ASP R:8 , ARG V:10 , HOH V:256binding site for residue PSC O 302
071AJ8SOFTWARETYR N:447 , ALA O:2 , GLN O:10 , LEU O:136 , PRO O:166 , TYR O:193 , HOH O:440 , HOH O:505binding site for residue EDO O 303
072AJ9SOFTWAREGLU O:157 , HOH O:432 , HOH O:436 , EDO P:307binding site for residue EDO O 304
073AK1SOFTWAREPGV G:104 , HIS N:233 , ASP N:300 , THR N:301 , TYR N:304 , HOH N:744 , TRP P:99 , HIS P:103 , HOH P:484binding site for residue CHD P 301
074AK2SOFTWAREHIS N:151 , PGV N:609 , TRP P:34 , TYR P:181 , TYR P:182 , ALA P:184 , PHE P:186 , THR P:187 , ILE P:188 , PHE P:198 , HOH P:404 , HOH P:545 , TRP T:62 , THR T:68 , PHE T:69 , PHE T:70 , HIS T:71 , ASN T:76 , HOH T:232binding site for residue PEK P 302
075AK3SOFTWAREILE B:67 , CHD B:304 , LYS P:157 , HIS P:158 , GLN P:161 , THR P:168 , TYR P:172 , HOH P:431 , HOH P:530 , ALA S:1 , EDO S:104 , ARG T:17 , PHE T:21 , TRP T:36 , CDL T:102binding site for residue PEK P 303
076AK4SOFTWARETRP P:58 , VAL P:61 , SER P:65 , THR P:66 , HIS P:71 , HIS P:207 , ILE P:210 , PHE P:214 , ARG P:221 , HIS P:226 , PHE P:227 , THR P:228 , HIS P:231 , HIS P:232 , PHE P:233 , GLY P:234 , CDL P:305 , HOH P:422 , HOH P:424 , HOH P:492 , HOH S:229binding site for residue PGV P 304
077AK5SOFTWAREMET P:51 , TYR P:55 , ARG P:59 , ILE P:62 , ARG P:63 , PHE P:67 , THR P:213 , PHE P:220 , LYS P:224 , HIS P:226 , PGV P:304 , HOH P:457 , HOH P:509 , HOH P:525 , HOH P:542 , LYS W:8binding site for residue CDL P 305
078AK6SOFTWAREARG P:156 , LYS P:157 , LEU P:160 , GLN P:161 , PHE P:219 , LEU P:223binding site for residue CHD P 306
079AK7SOFTWAREGLY O:177 , EDO O:304 , HOH O:436 , GLU P:111 , HOH P:417 , HOH P:456 , HOH P:465binding site for residue EDO P 307
080AK8SOFTWARECHD W:101binding site for residue EDO P 308
081AK9SOFTWAREHIS P:243binding site for residue EDO P 309
082AL1SOFTWARETRP N:334 , MET N:339 , LEU N:342 , ALA N:415 , HOH N:714 , LEU O:39 , ILE O:42 , THR O:47 , HOH O:538 , ARG Q:73 , SER Q:74 , GLU Q:77 , TRP Q:78 , HOH Q:334 , HOH Q:335 , HOH Q:402 , ARG V:16 , EDO V:101binding site for residue TGL Q 201
083AL2SOFTWAREARG R:14 , TYR R:18binding site for residue EDO R 201
084AL3SOFTWARETYR R:18 , LYS R:21 , GLU R:28 , HOH R:301binding site for residue EDO R 202
085AL4SOFTWARECYS S:60 , CYS S:62 , CYS S:82 , CYS S:85binding site for residue ZN S 101
086AL5SOFTWARETHR N:490 , EDO N:611 , SER S:67 , VAL S:69 , TRP S:71 , HOH S:234 , HOH S:241 , HOH S:249binding site for residue EDO S 102
087AL6SOFTWAREHIS P:231 , HOH P:496 , ASP S:9 , GLU S:17 , HOH S:211 , HOH S:248binding site for residue EDO S 103
088AL7SOFTWARECHD B:304 , ASP F:65 , PEK P:303 , ALA S:1binding site for residue EDO S 104
089AL8SOFTWARETHR C:95 , PHE C:98 , VAL C:247 , SER T:2 , ALA T:3 , LYS T:5 , GLY T:6 , ASP T:7 , HIS T:8 , CDL T:102 , HOH T:249binding site for residue PEK T 101
090AL9SOFTWAREASP A:300 , TYR A:304 , SER A:307 , ILE A:311 , EDO A:615 , HOH A:890 , ALA B:70 , ALA B:77 , LEU B:78 , LEU B:81 , TYR B:85 , HOH B:520 , PGV C:305 , ASN P:125 , LEU P:127 , LEU P:131 , VAL P:142 , PEK P:303 , SER T:27 , LEU T:30 , CYS T:31 , ASN T:34 , LEU T:37 , HIS T:38 , PEK T:101 , HOH T:260binding site for residue CDL T 102
091AM1SOFTWAREHOH P:545 , TRP T:62 , GLY T:63 , HOH T:207 , HOH T:236binding site for residue DMU T 103
092AM2SOFTWAREGLY P:120 , ALA T:46 , PHE T:47 , ILE T:48 , LEU T:53 , ARG T:54 , HOH T:222binding site for residue EDO T 104
093AM3SOFTWARETGL Q:201 , ARG V:16 , HIS V:20 , HOH V:201 , HOH V:214binding site for residue EDO V 101
094AM4SOFTWAREILE N:3 , EDO P:308 , TYR W:32 , ARG W:33 , THR W:37 , LEU W:40 , HOH W:243binding site for residue CHD W 101
095AM5SOFTWARELEU N:110 , SER P:29 , SER W:46 , HOH W:201binding site for residue EDO W 102
096AM6SOFTWAREMET N:423binding site for residue EDO X 101
097AM7SOFTWARETHR N:17 , LEU N:18 , PHE N:22 , TRP N:25 , TRP N:81 , LEU N:113 , PHE N:400 , ILE Y:11 , PRO Y:12 , PHE Y:13 , SER Y:14 , ARG Y:20 , MET Y:24 , MET Y:25 , PHE Y:28 , PHE Y:29 , HOH Y:228 , HOH Y:234binding site for residue TGL Y 101
098AM8SOFTWARETRP Q:98 , LEU Z:27 , LEU Z:28 , GLY Z:31 , TRP Z:32 , TYR Z:35 , HIS Z:36 , HOH Z:206binding site for residue DMU Z 101
099AM9SOFTWAREILE N:3 , ASN N:4 , ARG N:5 , TRP N:6 , HOH N:807 , HOH N:913 , HOH N:921 , TYR Y:3 , PRO Y:12binding site for Di-peptide FME N 1 and PHE N 2
100AN1SOFTWARETRP N:236 , PHE N:238 , GLY N:239 , PRO N:241 , GLU N:242 , VAL N:243 , ILE N:245 , LEU N:246 , ILE N:247 , LEU N:248 , ILE N:280 , GLY N:284 , VAL N:287 , HIS N:290 , HIS N:291 , ILE N:312 , HEA N:602 , CU N:603 , CMO N:606binding site for Di-peptide HIS N 240 and TYR N 244
101AN2SOFTWARESER N:434 , ALA N:446 , TYR N:447 , TYR O:3 , GLN O:6 , GLN O:10 , LEU O:133 , TYR O:193 , EDO O:303 , HOH O:505 , HOH O:547binding site for Di-peptide FME O 1 and ALA O 2
102AN3SOFTWAREHOH R:386 , ALA V:3 , LEU V:4 , HOH V:217 , HOH V:234 , HOH V:239binding site for Di-peptide SAC V 1 and THR V 2

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1H:29 -H:64
2H:39 -H:53
3U:29 -U:64
4U:39 -U:53

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Pro A:130 -Pro A:131
2Cys A:498 -Pro A:499
3Gln B:103 -Trp B:104
4Trp C:116 -Pro C:117
5Pro N:130 -Pro N:131
6Cys N:498 -Pro N:499
7Gln O:103 -Trp O:104
8Trp P:116 -Pro P:117

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5B3S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5B3S)

(-) Exons   (11, 22)

Asymmetric Unit (11, 22)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000187781ENSBTAE00000392730chr14:62538824-6253890885COX6C_BOVIN-00--
1.2ENSBTAT000000187782ENSBTAE00000152930chr14:62539837-62539968132COX6C_BOVIN1-37372I:1-36
V:1-36
36
36
1.3ENSBTAT000000187783ENSBTAE00000152932chr14:62540912-62541039128COX6C_BOVIN38-74372I:37-73
V:37-73
37
37
1.4ENSBTAT000000187784ENSBTAE00000382779chr14:62548625-62548744120COX6C_BOVIN-00--

2.1ENSBTAT000000198081ENSBTAE00000161251chr18:46232862-4623280261CX7A1_BOVIN1-550--
2.2ENSBTAT000000198082ENSBTAE00000161252chr18:46232104-4623201887CX7A1_BOVIN6-34292J:1-13
W:1-13
13
13
2.3ENSBTAT000000198083ENSBTAE00000161253chr18:46231883-4623179985CX7A1_BOVIN35-63292J:14-42
W:14-42
29
29
2.4ENSBTAT000000198084ENSBTAE00000161254chr18:46231418-46231281138CX7A1_BOVIN63-80182J:42-58
W:42-58
17
17

3.1ENSBTAT000000229491ENSBTAE00000344359chr21:33835267-33835426160COX5A_BOVIN1-36360--
3.2ENSBTAT000000229492ENSBTAE00000187373chr21:33840320-33840436117COX5A_BOVIN36-75402E:5-32
R:5-32
28
28
3.3ENSBTAT000000229493ENSBTAE00000187374chr21:33842603-33842724122COX5A_BOVIN75-115412E:32-72
R:32-72
41
41
3.4ENSBTAT000000229494ENSBTAE00000187376chr21:33843979-33844143165COX5A_BOVIN116-152372E:73-109
R:73-109
37
37
3.5ENSBTAT000000229495ENSBTAE00000187379chr21:33846054-33846214161COX5A_BOVIN-00--

4.1ENSBTAT000000260021ENSBTAE00000425992chr25:29305227-29305113115CX6A2_BOVIN1-25252G:1-13
T:1-13
13
13
4.2ENSBTAT000000260022ENSBTAE00000211646chr25:29304966-29304830137CX6A2_BOVIN25-70462G:13-58
T:13-58
46
46
4.3ENSBTAT000000260023ENSBTAE00000211652chr25:29304732-29304604129CX6A2_BOVIN71-97272G:59-84
T:59-84
26
26

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:514
 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot  Length:514

    Alignment length:514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
           COX1_BOVIN     1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhh..............ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b3s A   1 mFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
                            |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                            1-FME                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             

Chain B from PDB  Type:PROTEIN  Length:227
 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
           COX2_BOVIN     1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeee..eeeeee.....eeeee...hhhhh.............eeee....eeeeeee....eeeeehhhheeeee.....eeeee.....eeeeee.......hhhh.eeeeeeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b3s B   1 mAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
                            1-FME                                                                                                                                                                                                                              

Chain C from PDB  Type:PROTEIN  Length:259
 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
           COX3_BOVIN     3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b3s C   3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         

Chain D from PDB  Type:PROTEIN  Length:144
 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:144
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165    
          COX41_BOVIN    26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhh.ee....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5b3s D   4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143    

Chain E from PDB  Type:PROTEIN  Length:105
 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:105
                                    57        67        77        87        97       107       117       127       137       147     
          COX5A_BOVIN    48 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.2  PDB: E:5-32       ----------------------------------------Exon 3.4  PDB: E:73-109               Transcript 3 (1)
           Transcript 3 (2) ---------------------------Exon 3.3  PDB: E:32-72 UniProt: 75-115   ------------------------------------- Transcript 3 (2)
                 5b3s E   5 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109
                                    14        24        34        44        54        64        74        84        94       104     

Chain F from PDB  Type:PROTEIN  Length:94
 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:94
                                    41        51        61        71        81        91       101       111       121    
          COX5B_BOVIN    32 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPH 125
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhh....................eeeee...eeeeee.........eeeeee....ee......eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 5b3s F   1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPH  94
                                    10        20        30        40        50        60        70        80        90    

Chain G from PDB  Type:PROTEIN  Length:84
 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:84
                                    22        32        42        52        62        72        82        92    
          CX6A2_BOVIN    13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  96
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.............................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
           Transcript 4 (1) Exon 4.1     ---------------------------------------------Exon 4.3  PDB: G:59-84     Transcript 4 (1)
           Transcript 4 (2) ------------Exon 4.2  PDB: G:13-58 UniProt: 25-70         -------------------------- Transcript 4 (2)
                 5b3s G   1 ASAAKGDHGGtGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  84
                                    10|       20        30        40        50        60        70        80    
                                     11-TPO                                                                     

Chain H from PDB  Type:PROTEIN  Length:79
 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:79
                                    17        27        37        47        57        67        77         
          CX6B1_BOVIN     8 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  86
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 5b3s H   7 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  85
                                    16        26        36        46        56        66        76         

Chain I from PDB  Type:PROTEIN  Length:73
 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:73
                                    11        21        31        41        51        61        71   
          COX6C_BOVIN     2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  74
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: I:1-36 UniProt: 1-37 Exon 1.3  PDB: I:37-73 UniProt: 38-74 Transcript 1
                 5b3s I   1 xTALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  73
                            |       10        20        30        40        50        60        70   
                            1-SAC                                                                    

Chain J from PDB  Type:PROTEIN  Length:58
 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:58
                                    31        41        51        61        71        
          CX7A1_BOVIN    22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK  79
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2     Exon 2.3  PDB: J:14-42       ---------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.4          Transcript 2 (2)
                 5b3s J   1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK  58
                                    10        20        30        40        50        

Chain K from PDB  Type:PROTEIN  Length:49
 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:49
                                    39        49        59        69         
          COX7B_BOVIN    30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  78
               SCOP domains ------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 5b3s K   6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  54
                                    15        25        35        45         

Chain L from PDB  Type:PROTEIN  Length:46
 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot  Length:63

    Alignment length:46
                                    27        37        47        57      
          COX7C_BOVIN    18 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  63
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 5b3s L   2 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  47
                                    11        21        31        41      

Chain M from PDB  Type:PROTEIN  Length:43
 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:43
                                    34        44        54        64   
          COX8B_BOVIN    25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  67
               SCOP domains ------------------------------------------- SCOP domains
               CATH domains ------------------------------------------- CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 5b3s M   1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  43
                                    10        20        30        40   

Chain N from PDB  Type:PROTEIN  Length:514
 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot  Length:514

    Alignment length:514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
           COX1_BOVIN     1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhh..............ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b3s N   1 mFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
                            1-FME                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             

Chain O from PDB  Type:PROTEIN  Length:227
 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
           COX2_BOVIN     1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeee..eeeeee.....eeeee...hhhhh.............eeee....eeeeeee....eeeeehhhheeeee.....eeeee.....eeeeee.......hhhh.eeeeeeehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b3s O   1 mAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
                            1-FME                                                                                                                                                                                                                              

Chain P from PDB  Type:PROTEIN  Length:259
 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
           COX3_BOVIN     3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b3s P   3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         

Chain Q from PDB  Type:PROTEIN  Length:144
 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:144
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165    
          COX41_BOVIN    26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhh.ee....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5b3s Q   4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143    

Chain R from PDB  Type:PROTEIN  Length:105
 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:105
                                    57        67        77        87        97       107       117       127       137       147     
          COX5A_BOVIN    48 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.2  PDB: R:5-32       ----------------------------------------Exon 3.4  PDB: R:73-109               Transcript 3 (1)
           Transcript 3 (2) ---------------------------Exon 3.3  PDB: R:32-72 UniProt: 75-115   ------------------------------------- Transcript 3 (2)
                 5b3s R   5 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109
                                    14        24        34        44        54        64        74        84        94       104     

Chain S from PDB  Type:PROTEIN  Length:94
 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:94
                                    41        51        61        71        81        91       101       111       121    
          COX5B_BOVIN    32 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPH 125
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhh....................eeeee...eeeeee.........eeeeee....ee......eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 5b3s S   1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPH  94
                                    10        20        30        40        50        60        70        80        90    

Chain T from PDB  Type:PROTEIN  Length:84
 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:84
                                    22        32        42        52        62        72        82        92    
          CX6A2_BOVIN    13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  96
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhh................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
           Transcript 4 (1) Exon 4.1     ---------------------------------------------Exon 4.3  PDB: T:59-84     Transcript 4 (1)
           Transcript 4 (2) ------------Exon 4.2  PDB: T:13-58 UniProt: 25-70         -------------------------- Transcript 4 (2)
                 5b3s T   1 ASAAKGDHGGtGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  84
                                    10|       20        30        40        50        60        70        80    
                                     11-TPO                                                                     

Chain U from PDB  Type:PROTEIN  Length:79
 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:79
                                    17        27        37        47        57        67        77         
          CX6B1_BOVIN     8 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  86
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 5b3s U   7 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  85
                                    16        26        36        46        56        66        76         

Chain V from PDB  Type:PROTEIN  Length:73
 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:73
                                    11        21        31        41        51        61        71   
          COX6C_BOVIN     2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  74
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: V:1-36 UniProt: 1-37 Exon 1.3  PDB: V:37-73 UniProt: 38-74 Transcript 1
                 5b3s V   1 xTALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  73
                            |       10        20        30        40        50        60        70   
                            1-SAC                                                                    

Chain W from PDB  Type:PROTEIN  Length:58
 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:58
                                    31        41        51        61        71        
          CX7A1_BOVIN    22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK  79
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2     Exon 2.3  PDB: W:14-42       ---------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.4          Transcript 2 (2)
                 5b3s W   1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK  58
                                    10        20        30        40        50        

Chain X from PDB  Type:PROTEIN  Length:49
 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:49
                                    39        49        59        69         
          COX7B_BOVIN    30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  78
               SCOP domains ------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 5b3s X   6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  54
                                    15        25        35        45         

Chain Y from PDB  Type:PROTEIN  Length:46
 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot  Length:63

    Alignment length:46
                                    27        37        47        57      
          COX7C_BOVIN    18 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  63
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 5b3s Y   2 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  47
                                    11        21        31        41      

Chain Z from PDB  Type:PROTEIN  Length:43
 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:43
                                    34        44        54        64   
          COX8B_BOVIN    25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  67
               SCOP domains ------------------------------------------- SCOP domains
               CATH domains ------------------------------------------- CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 5b3s Z   1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  43
                                    10        20        30        40   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5B3S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5B3S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5B3S)

(-) Gene Ontology  (32, 127)

Asymmetric Unit(hide GO term definitions)
Chain A,N   (COX1_BOVIN | P00396)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0009060    aerobic respiration    The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006119    oxidative phosphorylation    The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain B,O   (COX2_BOVIN | P68530)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0022900    electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain C,P   (COX3_BOVIN | P00415)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0015002    heme-copper terminal oxidase activity    Catalysis of the four-electron reduction of dioxygen (O2) to water, coupled to generation of a proton electrochemical gradient across a membrane.
biological process
    GO:0019646    aerobic electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to oxygen to generate a transmembrane electrochemical gradient.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0008535    respiratory chain complex IV assembly    The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms.
    GO:0022904    respiratory electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain D,Q   (COX41_BOVIN | P00423)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006123    mitochondrial electron transport, cytochrome c to oxygen    The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0031966    mitochondrial membrane    Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain E,R   (COX5A_BOVIN | P00426)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006123    mitochondrial electron transport, cytochrome c to oxygen    The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain F,S   (COX5B_BOVIN | P00428)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005740    mitochondrial envelope    The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain G,T   (CX6A2_BOVIN | P07471)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain H,U   (CX6B1_BOVIN | P00429)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005758    mitochondrial intermembrane space    The region between the inner and outer lipid bilayers of the mitochondrial envelope.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain I,V   (COX6C_BOVIN | P04038)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain J,W   (CX7A1_BOVIN | P07470)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005746    mitochondrial respiratory chain    The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain K,X   (COX7B_BOVIN | P13183)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:0007417    central nervous system development    The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005746    mitochondrial respiratory chain    The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain L,Y   (COX7C_BOVIN | P00430)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain M,Z   (COX8B_BOVIN | P10175)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006123    mitochondrial electron transport, cytochrome c to oxygen    The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COX1_BOVIN | P003961occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5gpn 5iy5 5luf 5xdq
        COX2_BOVIN | P685301occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5gpn 5iy5 5luf 5xdq
        COX3_BOVIN | P004151occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5iy5 5luf 5xdq
        COX41_BOVIN | P004231occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5gpn 5iy5 5luf 5xdq
        COX5A_BOVIN | P004261occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5gpn 5iy5 5luf 5xdq
        COX5B_BOVIN | P004281occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5gpn 5iy5 5luf 5xdq
        COX6C_BOVIN | P040381occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5gpn 5iy5 5luf 5xdq
        COX7B_BOVIN | P131831occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5gpn 5iy5 5luf 5xdq
        COX7C_BOVIN | P004301occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5gpn 5iy5 5luf 5xdq
        COX8B_BOVIN | P101751occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5gpn 5iy5 5luf 5xdq
        CX6A2_BOVIN | P074711occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5gpn 5iy5 5luf 5xdq
        CX6B1_BOVIN | P004291occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5gpn 5iy5 5luf 5xdq
        CX7A1_BOVIN | P074701occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3abm 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5gpn 5iy5 5luf 5xdq

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5B3S)