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(-) Description

Title :  BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE (200-S X-RAY EXPOSURE DATASET)
 
Authors :  H. Aoyama, K. Muramoto, K. Shinzawa-Itoh, E. Yamashita, T. Tsukihara, T. Ogura, S. Yoshikawa
Date :  16 Dec 09  (Deposition) - 19 Jan 10  (Release) - 19 Jan 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L,M  (1x)
Biol. Unit 2:  N,O,P,Q,R,S,T,U,V,W,X,Y,Z  (1x)
Keywords :  Oxidoreductase, Copper, Electron Transport, Formylation, Heme, Iron, Membrane, Mitochondrion, Mitochondrion Inner Membrane, Respiratory Chain, Transmembrane, Transport, Acetylation, Transit Peptide, Zinc, Isopeptide Bond, Ubl Conjugation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Aoyama, K. Muramoto, K. Shinzawa-Itoh, K. Hirata, E. Yamashita, T. Tsukihara, T. Ogura, S. Yoshikawa
A Peroxide Bridge Between Fe And Cu Ions In The O2 Reduction Site Of Fully Oxidized Cytochrome C Oxidase Could Suppress The Proton Pump
Proc. Natl. Acad. Sci. Usa V. 106 2165 2009
PubMed-ID: 19164527  |  Reference-DOI: 10.1073/PNAS.0806391106
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CYTOCHROME C OXIDASE SUBUNIT 1
    ChainsA, N
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE I
 
Molecule 2 - CYTOCHROME C OXIDASE SUBUNIT 2
    ChainsB, O
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE II
 
Molecule 3 - CYTOCHROME C OXIDASE SUBUNIT 3
    ChainsC, P
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE III
 
Molecule 4 - CYTOCHROME C OXIDASE SUBUNIT 4 ISOFORM 1
    ChainsD, Q
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE SUBUNIT IV ISOFORM 1, COX IV- 1, CYTOCHROME C OXIDASE POLYPEPTIDE IV
 
Molecule 5 - CYTOCHROME C OXIDASE SUBUNIT 5A
    ChainsE, R
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VA
 
Molecule 6 - CYTOCHROME C OXIDASE SUBUNIT 5B
    ChainsF, S
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VB, CYTOCHROME C OXIDASE POLYPEPTIDE VIA
 
Molecule 7 - CYTOCHROME C OXIDASE SUBUNIT 6A2
    ChainsG, T
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VIA-HEART, COXVIAH, CYTOCHROME C OXIDASE POLYPEPTIDE VIB
 
Molecule 8 - CYTOCHROME C OXIDASE SUBUNIT 6B1
    ChainsH, U
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE SUBUNIT VIB ISOFORM 1, COX VIB-1, CYTOCHROME C OXIDASE POLYPEPTIDE VII, CYTOCHROME C OXIDASE SUBUNIT AED
 
Molecule 9 - CYTOCHROME C OXIDASE SUBUNIT 6C
    ChainsI, V
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VIC, CYTOCHROME C OXIDASE SUBUNIT STA
 
Molecule 10 - CYTOCHROME C OXIDASE POLYPEPTIDE 7A1
    ChainsJ, W
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VIIA-HEART, CYTOCHROME C OXIDASE SUBUNIT VIIA-H, COX VIIA-M, VIIIC
 
Molecule 11 - CYTOCHROME C OXIDASE SUBUNIT 7B
    ChainsK, X
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VIIB, IHQ
 
Molecule 12 - CYTOCHROME C OXIDASE SUBUNIT 7C
    ChainsL, Y
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE POLYPEPTIDE VIIC, CYTOCHROME C OXIDASE POLYPEPTIDE VIIIA
 
Molecule 13 - CYTOCHROME C OXIDASE SUBUNIT 8B
    ChainsM, Z
    EC Number1.9.3.1
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCYTOCHROME C OXIDASE SUBUNIT 8H, CYTOCHROME C OXIDASE POLYPEPTIDE VIII-HEART, CYTOCHROME C OXIDASE SUBUNIT 8-1, VIIIB, IX

 Structural Features

(-) Chains, Units

  1234567891011121314151617181920212223242526
Asymmetric Unit ABCDEFGHIJKLMNOPQRSTUVWXYZ
Biological Unit 1 (1x)ABCDEFGHIJKLM             
Biological Unit 2 (1x)             NOPQRSTUVWXYZ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (17, 62)

Asymmetric Unit (17, 62)
No.NameCountTypeFull Name
1CDL4Ligand/IonCARDIOLIPIN
2CHD8Ligand/IonCHOLIC ACID
3CU2Ligand/IonCOPPER (II) ION
4CUA2Ligand/IonDINUCLEAR COPPER ION
5DMU4Ligand/IonDECYL-BETA-D-MALTOPYRANOSIDE
6FME4Mod. Amino AcidN-FORMYLMETHIONINE
7HEA4Ligand/IonHEME-A
8MG2Ligand/IonMAGNESIUM ION
9NA2Ligand/IonSODIUM ION
10PEK6Ligand/Ion(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
11PER2Ligand/IonPEROXIDE ION
12PGV8Ligand/Ion(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
13PSC2Ligand/Ion(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
14TGL6Ligand/IonTRISTEAROYLGLYCEROL
15TPO2Mod. Amino AcidPHOSPHOTHREONINE
16UNX2Ligand/IonUNKNOWN ATOM OR ION
17ZN2Ligand/IonZINC ION
Biological Unit 1 (13, 27)
No.NameCountTypeFull Name
1CDL2Ligand/IonCARDIOLIPIN
2CHD4Ligand/IonCHOLIC ACID
3CU-1Ligand/IonCOPPER (II) ION
4CUA1Ligand/IonDINUCLEAR COPPER ION
5DMU2Ligand/IonDECYL-BETA-D-MALTOPYRANOSIDE
6FME2Mod. Amino AcidN-FORMYLMETHIONINE
7HEA2Ligand/IonHEME-A
8MG-1Ligand/IonMAGNESIUM ION
9NA-1Ligand/IonSODIUM ION
10PEK3Ligand/Ion(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
11PER1Ligand/IonPEROXIDE ION
12PGV4Ligand/Ion(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
13PSC1Ligand/Ion(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
14TGL3Ligand/IonTRISTEAROYLGLYCEROL
15TPO1Mod. Amino AcidPHOSPHOTHREONINE
16UNX1Ligand/IonUNKNOWN ATOM OR ION
17ZN-1Ligand/IonZINC ION
Biological Unit 2 (13, 27)
No.NameCountTypeFull Name
1CDL2Ligand/IonCARDIOLIPIN
2CHD4Ligand/IonCHOLIC ACID
3CU-1Ligand/IonCOPPER (II) ION
4CUA1Ligand/IonDINUCLEAR COPPER ION
5DMU2Ligand/IonDECYL-BETA-D-MALTOPYRANOSIDE
6FME2Mod. Amino AcidN-FORMYLMETHIONINE
7HEA2Ligand/IonHEME-A
8MG-1Ligand/IonMAGNESIUM ION
9NA-1Ligand/IonSODIUM ION
10PEK3Ligand/Ion(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
11PER1Ligand/IonPEROXIDE ION
12PGV4Ligand/Ion(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
13PSC1Ligand/Ion(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
14TGL3Ligand/IonTRISTEAROYLGLYCEROL
15TPO1Mod. Amino AcidPHOSPHOTHREONINE
16UNX1Ligand/IonUNKNOWN ATOM OR ION
17ZN-1Ligand/IonZINC ION

(-) Sites  (54, 54)

Asymmetric Unit (54, 54)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:240 , HIS A:290 , HIS A:291 , PER A:520BINDING SITE FOR RESIDUE CU A 517
02AC2SOFTWAREHIS A:240 , VAL A:243 , HIS A:291 , HEA A:516 , CU A:517BINDING SITE FOR RESIDUE PER A 520
03AC3SOFTWAREHIS A:368 , ASP A:369 , HOH A:2032 , GLU B:198 , HOH B:2031 , HOH B:2033BINDING SITE FOR RESIDUE MG A 518
04AC4SOFTWAREGLU A:40 , GLN A:43 , GLY A:45 , SER A:441 , HOH A:2026 , HOH A:2060BINDING SITE FOR RESIDUE NA A 519
05AC5SOFTWAREALA A:24 , MET A:28 , THR A:31 , SER A:34 , ILE A:37 , ARG A:38 , TYR A:54 , VAL A:58 , HIS A:61 , ALA A:62 , MET A:65 , ILE A:66 , VAL A:70 , GLY A:125 , TRP A:126 , TYR A:371 , PHE A:377 , HIS A:378 , SER A:382 , VAL A:386 , PHE A:393 , MET A:417 , PHE A:425 , GLN A:428 , ARG A:438 , ARG A:439 , SER A:458 , MET A:468 , HOH A:2005 , HOH A:2036 , HOH A:2045BINDING SITE FOR RESIDUE HEA A 515
06AC6SOFTWARETRP A:126 , TRP A:236 , VAL A:243 , TYR A:244 , HIS A:290 , HIS A:291 , THR A:309 , THR A:316 , GLY A:317 , GLY A:352 , GLY A:355 , ILE A:356 , LEU A:358 , ALA A:359 , ASP A:364 , HIS A:368 , VAL A:373 , HIS A:376 , PHE A:377 , VAL A:380 , LEU A:381 , ARG A:438 , PER A:520 , HOH A:2007 , HOH A:2016 , HOH A:2034 , HOH A:2044BINDING SITE FOR RESIDUE HEA A 516
07AC7SOFTWARETYR A:379 , ASN A:422 , PHE A:426 , HIS A:429 , PHE A:430 , LEU A:433 , HOH A:4722 , HOH A:4765 , LEU B:7 , LEU B:28 , VAL B:31 , PHE B:32 , SER B:35 , LEU B:39 , HOH D:2376BINDING SITE FOR RESIDUE TGL A 521
08AC8SOFTWAREASN A:406 , THR A:408 , HOH A:2153 , HOH A:2396 , PHE D:87 , PHE K:9 , GLN M:15 , LEU M:19 , SER M:20BINDING SITE FOR RESIDUE PGV A 524
09AC9SOFTWAREPHE A:94 , PRO A:95 , ARG A:96 , MET A:97 , HOH A:2138 , HOH A:2226 , HIS C:9 , GLY C:20 , ALA C:24 , ASN C:50 , TRP C:57 , TRP C:58 , GLU C:64 , HIS C:71 , GLY C:82 , SER C:89 , PEK C:264BINDING SITE FOR RESIDUE PGV A 522
10BC1SOFTWAREHIS B:161 , CYS B:196 , GLU B:198 , CYS B:200 , HIS B:204 , MET B:207BINDING SITE FOR RESIDUE CUA B 228
11BC2SOFTWAREMET A:271 , GLN B:59 , GLU B:62 , THR B:63 , THR B:66 , HOH B:2375 , ARG T:14 , ARG T:17 , PHE T:18 , GLY T:22 , PEK T:1265 , HOH T:3302BINDING SITE FOR RESIDUE CHD B 1086
12BC3SOFTWAREHIS A:233 , ASP A:300 , THR A:301 , TYR A:304 , TRP C:99 , HIS C:103 , CDL T:1269BINDING SITE FOR RESIDUE CHD C 525
13BC4SOFTWAREHIS A:151 , VAL A:155 , PGV A:522 , TRP C:34 , TYR C:181 , TYR C:182 , ALA C:184 , PHE C:186 , THR C:187 , ILE C:188 , PHE C:198 , TRP G:62 , THR G:68 , PHE G:69 , PHE G:70 , HIS G:71 , ASN G:76 , HOH G:2254BINDING SITE FOR RESIDUE PEK C 264
14BC5SOFTWARETRP C:58 , VAL C:61 , SER C:65 , THR C:66 , ILE C:210 , PHE C:214 , ARG C:221 , HIS C:226 , PHE C:227 , HIS C:231 , PHE C:233 , GLY C:234 , CDL C:270 , HOH C:2214 , HOH C:2350 , HOH F:2130 , HOH F:4100BINDING SITE FOR RESIDUE PGV C 267
15BC6SOFTWARETHR C:48 , MET C:51 , LEU C:52 , TYR C:55 , ARG C:59 , ARG C:63 , PHE C:67 , THR C:213 , VAL C:217 , PHE C:220 , LYS C:224 , HIS C:226 , PGV C:267 , HOH C:2164 , LYS J:8BINDING SITE FOR RESIDUE CDL C 270
16BC7SOFTWAREARG C:156 , PHE C:164 , LEU C:223 , PHE J:1BINDING SITE FOR RESIDUE CHD C 271
17BC8SOFTWARETRP A:334 , GLY A:343 , VAL A:419 , ILE B:42 , THR B:47 , HOH B:2353 , HOH B:4246 , ARG D:73 , SER D:74 , THR D:75 , GLU D:77 , TRP D:78 , HOH D:4405 , ARG I:16BINDING SITE FOR RESIDUE TGL D 523
18BC9SOFTWAREHOH A:4231 , ILE B:41 , HIS B:52 , MET B:56 , ASP B:57 , VAL B:61 , TRP B:65 , HOH B:4217 , ASP E:8 , PHE E:11 , LEU E:41 , HOH E:2122 , HOH E:2394 , HOH E:4744 , ARG I:10BINDING SITE FOR RESIDUE PSC E 230
19CC1SOFTWARECYS F:60 , CYS F:62 , CYS F:82 , CYS F:85BINDING SITE FOR RESIDUE ZN F 99
20CC2SOFTWARETRP C:34 , MET C:40 , SER G:61 , GLY G:63 , PHE G:69BINDING SITE FOR RESIDUE DMU G 272
21CC3SOFTWAREHIS C:158 , GLN C:161 , TYR C:172 , ARG G:17 , PHE G:21 , GLY G:22 , TRP G:36 , CDL G:269 , SER N:279 , GLN O:59 , THR O:66 , CHD O:229BINDING SITE FOR RESIDUE PEK G 265
22CC4SOFTWARELEU C:127 , LEU C:131 , LEU C:138 , VAL C:142 , LEU G:23 , SER G:27 , LEU G:30 , CYS G:31 , ASN G:34 , LEU G:37 , HIS G:38 , ARG G:42 , PEK G:265 , PHE N:282 , ILE N:286 , ASP N:300 , SER N:307 , ILE N:311 , LEU O:78 , TYR O:85BINDING SITE FOR RESIDUE CDL G 269
23CC5SOFTWARESER G:2 , ALA G:3 , LYS G:5 , HIS G:8 , HOH G:4355 , HOH G:4660 , PHE N:282 , LYS P:77 , ARG P:80 , TYR P:81 , ILE P:84 , THR P:95 , PHE P:98 , TRP P:240 , VAL P:247 , PHE P:251BINDING SITE FOR RESIDUE PEK G 1263
24CC6SOFTWAREASP A:298 , TRP C:99 , TYR C:102 , HIS C:103 , LEU C:106 , HOH C:4502 , ASN H:22 , ASN H:24 , HOH H:4417BINDING SITE FOR RESIDUE PGV H 268
25CC7SOFTWARETYR J:32 , ARG J:33 , MET J:36 , THR J:37 , LEU J:40BINDING SITE FOR RESIDUE CHD J 60
26CC8SOFTWAREPHE A:2 , THR A:17 , LEU A:18 , LEU A:20 , TRP A:25 , PRO A:106 , LEU A:113 , PHE A:400 , ILE A:472 , ILE L:11 , PRO L:12 , SER L:14 , ARG L:20 , MET L:24 , PHE L:29 , HOH L:4545BINDING SITE FOR RESIDUE TGL L 522
27CC9SOFTWARETRP D:98 , LEU M:27 , LEU M:28 , GLY M:31 , TRP M:32 , TYR M:35 , HIS M:36BINDING SITE FOR RESIDUE DMU M 526
28DC1SOFTWAREHIS N:240 , HIS N:290 , HIS N:291 , PER N:520BINDING SITE FOR RESIDUE CU N 517
29DC2SOFTWAREHIS N:240 , VAL N:243 , HIS N:291 , HEA N:516 , CU N:517BINDING SITE FOR RESIDUE PER N 520
30DC3SOFTWAREHIS N:368 , ASP N:369 , HOH N:3032 , GLU O:198 , HOH O:3031 , HOH O:3033BINDING SITE FOR RESIDUE MG N 1518
31DC4SOFTWAREGLU N:40 , GLN N:43 , GLY N:45 , SER N:441 , HOH N:3026 , HOH N:3060BINDING SITE FOR RESIDUE NA N 1519
32DC5SOFTWAREMET N:28 , THR N:31 , SER N:34 , ILE N:37 , ARG N:38 , TYR N:54 , VAL N:58 , HIS N:61 , ALA N:62 , MET N:65 , VAL N:70 , GLY N:125 , TRP N:126 , TYR N:371 , PHE N:377 , HIS N:378 , SER N:382 , VAL N:386 , PHE N:393 , PHE N:425 , GLN N:428 , ARG N:438 , ARG N:439 , MET N:468 , HOH N:3005 , HOH N:3036 , HOH N:3045BINDING SITE FOR RESIDUE HEA N 515
33DC6SOFTWARETRP N:126 , TRP N:236 , VAL N:243 , TYR N:244 , HIS N:290 , HIS N:291 , THR N:309 , ALA N:313 , THR N:316 , GLY N:317 , GLY N:352 , LEU N:353 , GLY N:355 , ILE N:356 , LEU N:358 , ALA N:359 , ASP N:364 , HIS N:368 , VAL N:373 , HIS N:376 , PHE N:377 , VAL N:380 , LEU N:381 , ARG N:438 , PER N:520 , HOH N:3007 , HOH N:3016 , HOH N:3034 , HOH N:3044 , ILE O:72BINDING SITE FOR RESIDUE HEA N 516
34DC7SOFTWAREASN N:406 , THR N:408 , TRP N:409 , ILE N:412 , HOH N:3396 , HOH N:4418 , HOH N:4682 , ALA Q:84 , PHE Q:87 , HIS X:10 , PRO Z:12 , ALA Z:16 , LEU Z:19 , SER Z:20 , HOH Z:3153BINDING SITE FOR RESIDUE PGV N 1524
35DC8SOFTWAREPHE N:94 , PRO N:95 , ARG N:96 , MET N:97 , MET N:100 , HOH N:3138 , HOH N:3226 , HIS P:9 , ASN P:50 , MET P:54 , TRP P:57 , TRP P:58 , GLU P:64 , HIS P:71 , LEU P:79 , GLY P:82 , PEK P:1264BINDING SITE FOR RESIDUE PGV N 1266
36DC9SOFTWAREHOH C:4575 , ALA G:1 , HOH G:4754 , ASP N:298 , HOH N:4084 , HOH N:4766 , THR P:95 , TRP P:99 , HIS P:103 , ALA P:107 , CHD P:1525BINDING SITE FOR RESIDUE PGV N 1268
37EC1SOFTWAREHIS O:161 , CYS O:196 , GLU O:198 , CYS O:200 , HIS O:204 , MET O:207BINDING SITE FOR RESIDUE CUA O 228
38EC2SOFTWAREARG G:14 , ARG G:17 , PEK G:265 , HOH G:2302 , MET N:271 , GLU O:62 , THR O:63 , THR O:66 , HOH O:3375BINDING SITE FOR RESIDUE CHD O 229
39EC3SOFTWAREASN N:422 , PHE N:430 , LEU N:433 , LEU O:7 , LEU O:28 , PHE O:32 , SER O:35 , LEU O:39 , HOH Q:4401BINDING SITE FOR RESIDUE TGL O 1521
40EC4SOFTWARETRP N:334 , LYS N:411 , PHE N:414 , HOH N:4407 , LEU O:39 , ILE O:42 , THR O:47 , LYS O:49 , ARG Q:73 , SER Q:74 , GLU Q:77 , TRP Q:78 , HOH Q:4568BINDING SITE FOR RESIDUE TGL O 1523
41EC5SOFTWARETRP P:34 , MET P:40 , HOH P:4208 , SER T:61 , TRP T:62 , GLY T:63 , PHE T:69BINDING SITE FOR RESIDUE DMU P 1272
42EC6SOFTWAREHIS N:233 , ASP N:300 , THR N:301 , TYR N:304 , PGV N:1268 , TRP P:99 , HIS P:103 , HOH P:4549BINDING SITE FOR RESIDUE CHD P 1525
43EC7SOFTWAREHIS N:151 , LEU N:215 , PGV N:1266 , TRP P:34 , TYR P:181 , TYR P:182 , ALA P:184 , PHE P:186 , THR P:187 , ILE P:188 , PHE P:198 , TRP T:62 , THR T:68 , PHE T:69 , PHE T:70 , HIS T:71 , ASN T:76BINDING SITE FOR RESIDUE PEK P 1264
44EC8SOFTWAREMET P:54 , TRP P:58 , VAL P:61 , SER P:65 , THR P:66 , HIS P:207 , ILE P:210 , THR P:213 , PHE P:214 , ARG P:221 , HIS P:226 , PHE P:227 , HIS P:231 , PHE P:233 , GLY P:234 , CDL P:1270 , HOH P:3214 , HOH P:3350 , HOH S:3130BINDING SITE FOR RESIDUE PGV P 1267
45EC9SOFTWAREMET P:51 , TYR P:55 , ARG P:59 , ARG P:63 , PHE P:67 , VAL P:217 , PHE P:220 , ARG P:221 , LYS P:224 , HIS P:226 , PGV P:1267 , HOH P:4189 , THR W:27BINDING SITE FOR RESIDUE CDL P 1270
46FC1SOFTWAREARG P:156 , PHE P:164 , LEU P:223 , PHE W:1BINDING SITE FOR RESIDUE CHD P 1271
47FC2SOFTWAREPHE N:321 , LEU N:324 , HOH N:4424 , ILE O:41 , HIS O:52 , MET O:56 , ASP O:57 , VAL O:61 , TRP O:65 , GLU R:6 , ASP R:8 , PHE R:11 , ASP R:40 , LEU R:41 , HOH R:3122 , HOH R:3394 , ARG V:10 , ALA V:14BINDING SITE FOR RESIDUE PSC R 1230
48FC3SOFTWARECYS S:60 , CYS S:62 , CYS S:82 , CYS S:85BINDING SITE FOR RESIDUE ZN S 99
49FC4SOFTWARELYS C:77 , ARG C:80 , TYR C:81 , ILE C:84 , VAL C:91 , THR C:95 , PHE C:98 , VAL C:247 , HOH C:4713 , SER T:2 , ALA T:3 , LYS T:5 , GLY T:6 , HIS T:8BINDING SITE FOR RESIDUE PEK T 263
50FC5SOFTWARECHD B:1086 , HIS P:158 , GLN P:161 , THR P:168 , HOH P:4242 , ARG T:17 , TRP T:36 , CDL T:1269BINDING SITE FOR RESIDUE PEK T 1265
51FC6SOFTWAREPHE A:282 , ASP A:300 , SER A:307 , ILE A:311 , LEU B:73 , LEU B:78 , LEU B:81 , ARG B:82 , TYR B:85 , CHD C:525 , LEU P:131 , TYR P:253 , VAL P:254 , TRP P:258 , LEU T:23 , SER T:27 , LEU T:30 , CYS T:31 , ASN T:34 , HIS T:38 , PEK T:1265 , HOH T:4409BINDING SITE FOR RESIDUE CDL T 1269
52FC7SOFTWARELEU N:7 , PHE N:8 , TYR W:32 , ARG W:33 , THR W:37BINDING SITE FOR RESIDUE CHD W 1060
53FC8SOFTWARETHR N:17 , LEU N:18 , LEU N:21 , PHE N:22 , TRP N:81 , PRO N:106 , LEU N:113 , PHE N:400 , ILE Y:11 , PRO Y:12 , PHE Y:13 , SER Y:14 , ARG Y:20 , MET Y:24 , MET Y:25 , PHE Y:28 , PHE Y:29 , HOH Y:4350BINDING SITE FOR RESIDUE TGL Y 1522
54FC9SOFTWARELEU Q:95 , TRP Q:98 , TYR Q:102 , LEU Z:27 , LEU Z:28 , GLY Z:31 , TRP Z:32 , TYR Z:35 , HIS Z:36BINDING SITE FOR RESIDUE DMU Z 1526

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1H:29 -H:64
2H:39 -H:53
3U:29 -U:64
4U:39 -U:53

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Pro A:130 -Pro A:131
2Cys A:498 -Pro A:499
3Gln B:103 -Trp B:104
4Trp C:116 -Pro C:117
5Pro N:130 -Pro N:131
6Cys N:498 -Pro N:499
7Gln O:103 -Trp O:104
8Trp P:116 -Pro P:117

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ABM)

(-) PROSITE Motifs  (9, 18)

Asymmetric Unit (9, 18)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COX2_TMPS50999 Cytochrome oxidase subunit II transmembrane region profile.COX2_BOVIN1-91
 
  2B:1-91
O:1-91
2COX1PS50855 Cytochrome oxidase subunit I profile.COX1_BOVIN1-514
 
  2A:1-514
N:1-514
3COX3PS50253 Heme-copper oxidase subunit III family profile.COX3_BOVIN4-261
 
  2C:4-261
P:4-261
4CHCHPS51808 Coiled coil-helix-coiled coil-helix (CHCH) domain profile.CX6B1_BOVIN27-73
 
  2H:26-72
U:26-72
5COX6APS01329 Cytochrome c oxidase subunit VIa signature.CX6A2_BOVIN67-84
 
  2G:55-72
T:55-72
6COX2_CUAPS50857 Cytochrome oxidase subunit II copper A binding domain profile.COX2_BOVIN92-225
 
  2B:92-225
O:92-225
7COX5B_1PS00848 Cytochrome c oxidase subunit Vb, zinc binding region signature.COX5B_BOVIN100-122
 
  2F:69-91
S:69-91
8COX2PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature.COX2_BOVIN159-207
 
  2B:159-207
O:159-207
9COX1_CUBPS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature.COX1_BOVIN236-291
 
  2A:236-291
N:236-291
Biological Unit 1 (9, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COX2_TMPS50999 Cytochrome oxidase subunit II transmembrane region profile.COX2_BOVIN1-91
 
  1B:1-91
-
2COX1PS50855 Cytochrome oxidase subunit I profile.COX1_BOVIN1-514
 
  1A:1-514
-
3COX3PS50253 Heme-copper oxidase subunit III family profile.COX3_BOVIN4-261
 
  1C:4-261
-
4CHCHPS51808 Coiled coil-helix-coiled coil-helix (CHCH) domain profile.CX6B1_BOVIN27-73
 
  1H:26-72
-
5COX6APS01329 Cytochrome c oxidase subunit VIa signature.CX6A2_BOVIN67-84
 
  1G:55-72
-
6COX2_CUAPS50857 Cytochrome oxidase subunit II copper A binding domain profile.COX2_BOVIN92-225
 
  1B:92-225
-
7COX5B_1PS00848 Cytochrome c oxidase subunit Vb, zinc binding region signature.COX5B_BOVIN100-122
 
  1F:69-91
-
8COX2PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature.COX2_BOVIN159-207
 
  1B:159-207
-
9COX1_CUBPS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature.COX1_BOVIN236-291
 
  1A:236-291
-
Biological Unit 2 (9, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COX2_TMPS50999 Cytochrome oxidase subunit II transmembrane region profile.COX2_BOVIN1-91
 
  1-
O:1-91
2COX1PS50855 Cytochrome oxidase subunit I profile.COX1_BOVIN1-514
 
  1-
N:1-514
3COX3PS50253 Heme-copper oxidase subunit III family profile.COX3_BOVIN4-261
 
  1-
P:4-261
4CHCHPS51808 Coiled coil-helix-coiled coil-helix (CHCH) domain profile.CX6B1_BOVIN27-73
 
  1-
U:26-72
5COX6APS01329 Cytochrome c oxidase subunit VIa signature.CX6A2_BOVIN67-84
 
  1-
T:55-72
6COX2_CUAPS50857 Cytochrome oxidase subunit II copper A binding domain profile.COX2_BOVIN92-225
 
  1-
O:92-225
7COX5B_1PS00848 Cytochrome c oxidase subunit Vb, zinc binding region signature.COX5B_BOVIN100-122
 
  1-
S:69-91
8COX2PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature.COX2_BOVIN159-207
 
  1-
O:159-207
9COX1_CUBPS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature.COX1_BOVIN236-291
 
  1-
N:236-291

(-) Exons   (11, 22)

Asymmetric Unit (11, 22)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000187781ENSBTAE00000392730chr14:62538824-6253890885COX6C_BOVIN-00--
1.2ENSBTAT000000187782ENSBTAE00000152930chr14:62539837-62539968132COX6C_BOVIN1-37372I:3-36
V:3-36
34
34
1.3ENSBTAT000000187783ENSBTAE00000152932chr14:62540912-62541039128COX6C_BOVIN38-74372I:37-73
V:37-73
37
37
1.4ENSBTAT000000187784ENSBTAE00000382779chr14:62548625-62548744120COX6C_BOVIN-00--

2.1ENSBTAT000000198081ENSBTAE00000161251chr18:46232862-4623280261CX7A1_BOVIN1-550--
2.2ENSBTAT000000198082ENSBTAE00000161252chr18:46232104-4623201887CX7A1_BOVIN6-34292J:1-13
W:1-13
13
13
2.3ENSBTAT000000198083ENSBTAE00000161253chr18:46231883-4623179985CX7A1_BOVIN35-63292J:14-42
W:14-42
29
29
2.4ENSBTAT000000198084ENSBTAE00000161254chr18:46231418-46231281138CX7A1_BOVIN63-80182J:42-57
W:42-57
16
16

3.1ENSBTAT000000229491ENSBTAE00000344359chr21:33835267-33835426160COX5A_BOVIN1-36360--
3.2ENSBTAT000000229492ENSBTAE00000187373chr21:33840320-33840436117COX5A_BOVIN36-75402E:6-32
R:6-32
27
27
3.3ENSBTAT000000229493ENSBTAE00000187374chr21:33842603-33842724122COX5A_BOVIN75-115412E:32-72
R:32-72
41
41
3.4ENSBTAT000000229494ENSBTAE00000187376chr21:33843979-33844143165COX5A_BOVIN116-152372E:73-109
R:73-109
37
37
3.5ENSBTAT000000229495ENSBTAE00000187379chr21:33846054-33846214161COX5A_BOVIN-00--

4.1ENSBTAT000000260021ENSBTAE00000425992chr25:29305227-29305113115CX6A2_BOVIN1-25252G:1-13
T:1-13
13
13
4.2ENSBTAT000000260022ENSBTAE00000211646chr25:29304966-29304830137CX6A2_BOVIN25-70462G:13-58
T:13-58
46
46
4.3ENSBTAT000000260023ENSBTAE00000211652chr25:29304732-29304604129CX6A2_BOVIN71-97272G:59-84
T:59-84
26
26

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:514
 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot  Length:514

    Alignment length:514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
           COX1_BOVIN     1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
               SCOP domains d3abma_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -3abmA00 A:2-514 Cytochrome C Oxidase, chain A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) COX1  PDB: A:1-514 UniProt: 1-514                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX1_CUB  PDB: A:236-291 UniProt: 236-291               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3abm A   1 mFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
                            |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                            1-FME                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             

Chain B from PDB  Type:PROTEIN  Length:227
 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
           COX2_BOVIN     1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
               SCOP domains d3abmb1 B:1-90 Mitochondrial cytochrome c oxidase, subunit II                             d3abmb2 B:91-227 Cytochrome c oxidase                                                                                                     SCOP domains
               CATH domains -3abmB01 B:2-91  [code=1.10.287.90, no name defined]                                       3abmB02 B:92-227 Cupredoxins -  blue copper proteins                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeee..eeeeee.....eeeee...hhhhh.............eeee....eeeeeee....eeeeehhhheeeee.....eeeee.....eeeeee.......hhhh.eeeeeeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) COX2_TM  PDB: B:1-91 UniProt: 1-91                                                         COX2_CUA  PDB: B:92-225 UniProt: 92-225                                                                                               -- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------COX2  PDB: B:159-207 UniProt: 159-207            -------------------- PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3abm B   1 mAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
                            1-FME                                                                                                                                                                                                                              

Chain C from PDB  Type:PROTEIN  Length:259
 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
           COX3_BOVIN     3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
               SCOP domains d3abmc_ C: Mitochondrial cytochrome c oxidase, subunit III                                                                                                                                                                                                          SCOP domains
               CATH domains 3abmC01 C:3-70  [code=1.10.287.70, no name defined]                 3abmC02 C:71-261  [code=1.20.120.80, no name defined]                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -COX3  PDB: C:4-261 UniProt: 4-261                                                                                                                                                                                                                                  PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3abm C   3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         

Chain D from PDB  Type:PROTEIN  Length:144
 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:144
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165    
          COX41_BOVIN    26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
               SCOP domains d3abmd_ D: automated matches                                                                                                                     SCOP domains
               CATH domains 3abmD00 D:4-147 Cytochrome C Oxidase, chain D                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhh.ee....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3abm D   4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143    

Chain E from PDB  Type:PROTEIN  Length:104
 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:104
                                    58        68        78        88        98       108       118       128       138       148    
          COX5A_BOVIN    49 ETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152
               SCOP domains d3abme_ E: Cytochrome c oxidase subunit E                                                                SCOP domains
               CATH domains 3abmE00 E:6-109  [code=1.25.40.40, no name defined]                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.2  PDB: E:6-32      ----------------------------------------Exon 3.4  PDB: E:73-109               Transcript 3 (1)
           Transcript 3 (2) --------------------------Exon 3.3  PDB: E:32-72 UniProt: 75-115   ------------------------------------- Transcript 3 (2)
                 3abm E   6 ETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109
                                    15        25        35        45        55        65        75        85        95       105    

Chain F from PDB  Type:PROTEIN  Length:93
 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:93
                                    44        54        64        74        84        94       104       114       124   
          COX5B_BOVIN    35 GGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQL 127
               SCOP domains d3abmf_ F: Cytochrome c oxidase Subunit F                                                     SCOP domains
               CATH domains 3abmF00 F:4-96 Cytochrome C Oxidase, chain F                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh....................eeee....eeeeee.........eeeeee....ee......eeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -----------------------------------------------------------------COX5B_1  PDB: F:69-91  ----- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 3abm F   4 GGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQL  96
                                    13        23        33        43        53        63        73        83        93   

Chain G from PDB  Type:PROTEIN  Length:84
 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:84
                                    22        32        42        52        62        72        82        92    
          CX6A2_BOVIN    13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  96
               SCOP domains d3abmg_ G: Mitochondrial cytochrome c oxidase subunit VIa                            SCOP domains
               CATH domains 3abmG00 G:1-84 Cytochrome C Oxidase, chain G                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhh................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------COX6A  PDB: G:55-7------------ PROSITE (5)
           Transcript 4 (1) Exon 4.1     ---------------------------------------------Exon 4.3  PDB: G:59-84     Transcript 4 (1)
           Transcript 4 (2) ------------Exon 4.2  PDB: G:13-58 UniProt: 25-70         -------------------------- Transcript 4 (2)
                 3abm G   1 ASAAKGDHGGtGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  84
                                    10|       20        30        40        50        60        70        80    
                                     11-TPO                                                                     

Chain H from PDB  Type:PROTEIN  Length:75
 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:75
                                    21        31        41        51        61        71        81     
          CX6B1_BOVIN    12 YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  86
               SCOP domains d3abmh_ H: automated matches                                                SCOP domains
               CATH domains 3abmH00 H:11-85 Cytochrome C oxidase subunit h                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------CHCH  PDB: H:26-72 UniProt: 27-73              ------------- PROSITE (4)
                 Transcript --------------------------------------------------------------------------- Transcript
                 3abm H  11 YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  85
                                    20        30        40        50        60        70        80     

Chain I from PDB  Type:PROTEIN  Length:71
 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    13        23        33        43        53        63        73 
          COX6C_BOVIN     4 ALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  74
               SCOP domains d3abmi_ I: Mitochondrial cytochrome c oxidase subunit VIc               SCOP domains
               CATH domains 3abmI00 I:3-73 Cytochrome C Oxidase, chain I                            CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: I:3-36 [INCOMPLETE]Exon 1.3  PDB: I:37-73 UniProt: 38-74 Transcript 1
                 3abm I   3 ALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  73
                                    12        22        32        42        52        62        72 

Chain J from PDB  Type:PROTEIN  Length:57
 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:57
                                    31        41        51        61        71       
          CX7A1_BOVIN    22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPH  78
               SCOP domains d3abmj_ J:                                                SCOP domains
               CATH domains 3abmJ00 J:1-57 Cytochrome C Oxidase, chain J              CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2     Exon 2.3  PDB: J:14-42       --------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.4         Transcript 2 (2)
                 3abm J   1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPH  57
                                    10        20        30        40        50       

Chain K from PDB  Type:PROTEIN  Length:49
 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:49
                                    39        49        59        69         
          COX7B_BOVIN    30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  78
               SCOP domains d3abmk_ K: automated matches                      SCOP domains
               CATH domains 3abmK00 K:6-54 Cytochrome C Oxidase, chain K      CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 3abm K   6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  54
                                    15        25        35        45         

Chain L from PDB  Type:PROTEIN  Length:46
 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot  Length:63

    Alignment length:46
                                    27        37        47        57      
          COX7C_BOVIN    18 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  63
               SCOP domains d3abml_ L:                                     SCOP domains
               CATH domains 3abmL00 L:2-47 Cytochrome C Oxidase, chain L   CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 3abm L   2 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  47
                                    11        21        31        41      

Chain M from PDB  Type:PROTEIN  Length:43
 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:43
                                    34        44        54        64   
          COX8B_BOVIN    25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  67
               SCOP domains d3abmm_ M: automated matches                SCOP domains
               CATH domains 3abmM00 M:1-43                              CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 3abm M   1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  43
                                    10        20        30        40   

Chain N from PDB  Type:PROTEIN  Length:514
 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot  Length:514

    Alignment length:514
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
           COX1_BOVIN     1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
               SCOP domains d3abmn_ N: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -3abmN00 N:2-514 Cytochrome C Oxidase, chain A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) COX1  PDB: N:1-514 UniProt: 1-514                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX1_CUB  PDB: N:236-291 UniProt: 236-291               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3abm N   1 mFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510    
                            1-FME                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             

Chain O from PDB  Type:PROTEIN  Length:227
 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:227
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
           COX2_BOVIN     1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
               SCOP domains d3abmo1 O:1-90 Mitochondrial cytochrome c oxidase, subunit II                             d3abmo2 O:91-227 Cytochrome c oxidase                                                                                                     SCOP domains
               CATH domains -3abmO01 O:2-91  [code=1.10.287.90, no name defined]                                       3abmO02 O:92-227 Cupredoxins -  blue copper proteins                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeee..eeeeee.....eeeee...hhhhh.............eeee....eeeeeee....eeeeehhhheeeee.....eeeee.....eeeee..............eeeeeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) COX2_TM  PDB: O:1-91 UniProt: 1-91                                                         COX2_CUA  PDB: O:92-225 UniProt: 92-225                                                                                               -- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------COX2  PDB: O:159-207 UniProt: 159-207            -------------------- PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3abm O   1 mAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       
                            1-FME                                                                                                                                                                                                                              

Chain P from PDB  Type:PROTEIN  Length:259
 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
           COX3_BOVIN     3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
               SCOP domains d3abmp_ P: Mitochondrial cytochrome c oxidase, subunit III                                                                                                                                                                                                          SCOP domains
               CATH domains 3abmP01 P:3-70  [code=1.10.287.70, no name defined]                 3abmP02 P:71-261  [code=1.20.120.80, no name defined]                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -COX3  PDB: P:4-261 UniProt: 4-261                                                                                                                                                                                                                                  PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3abm P   3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         

Chain Q from PDB  Type:PROTEIN  Length:144
 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:144
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165    
          COX41_BOVIN    26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169
               SCOP domains d3abmq_ Q: automated matches                                                                                                                     SCOP domains
               CATH domains 3abmQ00 Q:4-147 Cytochrome C Oxidase, chain D                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhh.ee....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3abm Q   4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143    

Chain R from PDB  Type:PROTEIN  Length:104
 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:104
                                    58        68        78        88        98       108       118       128       138       148    
          COX5A_BOVIN    49 ETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152
               SCOP domains d3abmr_ R: Cytochrome c oxidase subunit E                                                                SCOP domains
               CATH domains 3abmR00 R:6-109  [code=1.25.40.40, no name defined]                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.2  PDB: R:6-32      ----------------------------------------Exon 3.4  PDB: R:73-109               Transcript 3 (1)
           Transcript 3 (2) --------------------------Exon 3.3  PDB: R:32-72 UniProt: 75-115   ------------------------------------- Transcript 3 (2)
                 3abm R   6 ETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109
                                    15        25        35        45        55        65        75        85        95       105    

Chain S from PDB  Type:PROTEIN  Length:93
 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:93
                                    44        54        64        74        84        94       104       114       124   
          COX5B_BOVIN    35 GGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQL 127
               SCOP domains d3abms_ S: Cytochrome c oxidase Subunit F                                                     SCOP domains
               CATH domains 3abmS00 S:4-96 Cytochrome C Oxidase, chain F                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh....................eeeee...eeeeee.........eeeeee....ee......eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -----------------------------------------------------------------COX5B_1  PDB: S:69-91  ----- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 3abm S   4 GGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQL  96
                                    13        23        33        43        53        63        73        83        93   

Chain T from PDB  Type:PROTEIN  Length:84
 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:84
                                    22        32        42        52        62        72        82        92    
          CX6A2_BOVIN    13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  96
               SCOP domains d3abmt_ T: Mitochondrial cytochrome c oxidase subunit VIa                            SCOP domains
               CATH domains 3abmT00 T:1-84 Cytochrome C Oxidase, chain G                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhh................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------COX6A  PDB: T:55-7------------ PROSITE (5)
           Transcript 4 (1) Exon 4.1     ---------------------------------------------Exon 4.3  PDB: T:59-84     Transcript 4 (1)
           Transcript 4 (2) ------------Exon 4.2  PDB: T:13-58 UniProt: 25-70         -------------------------- Transcript 4 (2)
                 3abm T   1 ASAAKGDHGGtGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK  84
                                    10|       20        30        40        50        60        70        80    
                                     11-TPO                                                                     

Chain U from PDB  Type:PROTEIN  Length:75
 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:75
                                    21        31        41        51        61        71        81     
          CX6B1_BOVIN    12 YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  86
               SCOP domains d3abmu_ U: automated matches                                                SCOP domains
               CATH domains 3abmU00 U:11-85 Cytochrome C oxidase subunit h                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------CHCH  PDB: U:26-72 UniProt: 27-73              ------------- PROSITE (4)
                 Transcript --------------------------------------------------------------------------- Transcript
                 3abm U  11 YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI  85
                                    20        30        40        50        60        70        80     

Chain V from PDB  Type:PROTEIN  Length:71
 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    13        23        33        43        53        63        73 
          COX6C_BOVIN     4 ALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  74
               SCOP domains d3abmv_ V: Mitochondrial cytochrome c oxidase subunit VIc               SCOP domains
               CATH domains 3abmV00 V:3-73 Cytochrome C Oxidase, chain I                            CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: V:3-36 [INCOMPLETE]Exon 1.3  PDB: V:37-73 UniProt: 38-74 Transcript 1
                 3abm V   3 ALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK  73
                                    12        22        32        42        52        62        72 

Chain W from PDB  Type:PROTEIN  Length:57
 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:57
                                    31        41        51        61        71       
          CX7A1_BOVIN    22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPH  78
               SCOP domains d3abmw_ W:                                                SCOP domains
               CATH domains 3abmW00 W:1-57 Cytochrome C Oxidase, chain J              CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.2     Exon 2.3  PDB: W:14-42       --------------- Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------Exon 2.4         Transcript 2 (2)
                 3abm W   1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPH  57
                                    10        20        30        40        50       

Chain X from PDB  Type:PROTEIN  Length:49
 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot  Length:80

    Alignment length:49
                                    39        49        59        69         
          COX7B_BOVIN    30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  78
               SCOP domains d3abmx_ X: automated matches                      SCOP domains
               CATH domains 3abmX00 X:6-54 Cytochrome C Oxidase, chain K      CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 3abm X   6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR  54
                                    15        25        35        45         

Chain Y from PDB  Type:PROTEIN  Length:46
 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot  Length:63

    Alignment length:46
                                    27        37        47        57      
          COX7C_BOVIN    18 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  63
               SCOP domains d3abmy_ Y:                                     SCOP domains
               CATH domains 3abmY00 Y:2-47 Cytochrome C Oxidase, chain L   CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 3abm Y   2 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK  47
                                    11        21        31        41      

Chain Z from PDB  Type:PROTEIN  Length:43
 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot  Length:70

    Alignment length:43
                                    34        44        54        64   
          COX8B_BOVIN    25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  67
               SCOP domains d3abmz_ Z: automated matches                SCOP domains
               CATH domains 3abmZ00 Z:1-43                              CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 3abm Z   1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS  43
                                    10        20        30        40   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (14, 28)

Asymmetric Unit

(-) CATH Domains  (15, 30)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ABM)

(-) Gene Ontology  (32, 127)

Asymmetric Unit(hide GO term definitions)
Chain A,N   (COX1_BOVIN | P00396)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0009060    aerobic respiration    The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006119    oxidative phosphorylation    The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain B,O   (COX2_BOVIN | P68530)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0022900    electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0070469    respiratory chain    The protein complexes that form the electron transport system (the respiratory chain), associated with a cell membrane, usually the plasma membrane (in prokaryotes) or the inner mitochondrial membrane (on eukaryotes). The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain C,P   (COX3_BOVIN | P00415)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0015002    heme-copper terminal oxidase activity    Catalysis of the four-electron reduction of dioxygen (O2) to water, coupled to generation of a proton electrochemical gradient across a membrane.
biological process
    GO:0019646    aerobic electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to oxygen to generate a transmembrane electrochemical gradient.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0008535    respiratory chain complex IV assembly    The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms.
    GO:0022904    respiratory electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain D,Q   (COX41_BOVIN | P00423)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006123    mitochondrial electron transport, cytochrome c to oxygen    The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0031966    mitochondrial membrane    Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain E,R   (COX5A_BOVIN | P00426)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006123    mitochondrial electron transport, cytochrome c to oxygen    The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain F,S   (COX5B_BOVIN | P00428)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005740    mitochondrial envelope    The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain G,T   (CX6A2_BOVIN | P07471)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain H,U   (CX6B1_BOVIN | P00429)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005758    mitochondrial intermembrane space    The region between the inner and outer lipid bilayers of the mitochondrial envelope.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain I,V   (COX6C_BOVIN | P04038)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain J,W   (CX7A1_BOVIN | P07470)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005746    mitochondrial respiratory chain    The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain K,X   (COX7B_BOVIN | P13183)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:0007417    central nervous system development    The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005746    mitochondrial respiratory chain    The protein complexes that form the mitochondrial electron transport system (the respiratory chain), associated with the inner mitochondrial membrane. The respiratory chain complexes transfer electrons from an electron donor to an electron acceptor and are associated with a proton pump to create a transmembrane electrochemical gradient.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain L,Y   (COX7C_BOVIN | P00430)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

Chain M,Z   (COX8B_BOVIN | P10175)
molecular function
    GO:0004129    cytochrome-c oxidase activity    Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
biological process
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006123    mitochondrial electron transport, cytochrome c to oxygen    The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005751    mitochondrial respiratory chain complex IV    A protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Contains the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045277    respiratory chain complex IV    A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COX1_BOVIN | P003961occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX2_BOVIN | P685301occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX3_BOVIN | P004151occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5iy5 5luf 5xdq
        COX41_BOVIN | P004231occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX5A_BOVIN | P004261occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX5B_BOVIN | P004281occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX6C_BOVIN | P040381occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX7B_BOVIN | P131831occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX7C_BOVIN | P004301occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        COX8B_BOVIN | P101751occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        CX6A2_BOVIN | P074711occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        CX6B1_BOVIN | P004291occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq
        CX7A1_BOVIN | P074701occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2y69 2ybb 2zxw 3abk 3abl 3ag1 3ag2 3ag3 3ag4 3asn 3aso 3wg7 3x2q 5b1a 5b1b 5b3s 5gpn 5iy5 5luf 5xdq

(-) Related Entries Specified in the PDB File

1occ 1oco 1ocr 1ocz 1v54 1v55 2dyr 2dys 2eij 2eik 2eil 2eim 2ein 2occ 2zxw 3abl