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Summary Information (see also Sequences/Alignments below) |
Asymmetric/Biological Unit (17, 60)
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Asymmetric Unit (52, 52)
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Asymmetric/Biological Unit
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Asymmetric/Biological Unit
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(no "SAP(SNP)/Variant" information available for 1V54) |
Asymmetric/Biological Unit (10, 20)
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Asymmetric/Biological UnitChain A from PDB Type:PROTEIN Length:514 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot Length:514 Alignment length:514 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 COX1_BOVIN 1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514 SCOP domains d1v54a_ A: Mitochondrial cytochrome c oxidase, subunit I SCOP domains CATH domains -1v54A00 A:2-514 Cytochrome C Oxidase, chain A CATH domains Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (1) COX1 PDB: A:1-514 UniProt: 1-514 PROSITE (1) PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX1_CUB PDB: A:236-291 UniProt: 236-291 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2) Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1v54 A 1 mFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514 | 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 | 1-FME Chain B from PDB Type:PROTEIN Length:227 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot Length:227 Alignment length:227 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 COX2_BOVIN 1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227 SCOP domains d1v54b2 B:1-90 Mitochondrial cytochrome c oxidase, subunit II d1v54b1 B:91-227 Cytochrome c oxidase SCOP domains CATH domains -1v54B01 B:2-91 [code=1.10.287.90, no name defined] 1v54B02 B:92-227 Cupredoxins - blue copper proteins CATH domains Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) COX2_TM PDB: B:1-91 UniProt: 1-91 COX2_CUA PDB: B:92-225 UniProt: 92-225 -- PROSITE (2) PROSITE (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------COX2 PDB: B:159-207 UniProt: 159-207 -------------------- PROSITE (3) Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1v54 B 1 mAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227 | 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 1-FME Chain C from PDB Type:PROTEIN Length:259 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot Length:261 Alignment length:259 12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 COX3_BOVIN 3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261 SCOP domains d1v54c_ C: Mitochondrial cytochrome c oxidase, subunit III SCOP domains CATH domains 1v54C01 C:3-70 [code=1.10.287.70, no name defined] 1v54C02 C:71-261 [code=1.20.120.80, no name defined] CATH domains Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) -COX3 PDB: C:4-261 UniProt: 4-261 PROSITE (3) Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1v54 C 3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261 12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 Chain D from PDB Type:PROTEIN Length:144 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot Length:169 Alignment length:144 35 45 55 65 75 85 95 105 115 125 135 145 155 165 COX41_BOVIN 26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169 SCOP domains d1v54d_ D: Mitochondrial cytochrome c oxidase subunit IV SCOP domains CATH domains 1v54D00 D:4-147 Cytochrome C Oxidase, chain D CATH domains Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1v54 D 4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147 13 23 33 43 53 63 73 83 93 103 113 123 133 143 Chain E from PDB Type:PROTEIN Length:105 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot Length:152 Alignment length:105 57 67 77 87 97 107 117 127 137 147 COX5A_BOVIN 48 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152 SCOP domains d1v54e_ E: Cytochrome c oxidase subunit E SCOP domains CATH domains 1v54E00 E:5-109 [code=1.25.40.40, no name defined] CATH domains Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE --------------------------------------------------------------------------------------------------------- PROSITE Transcript 3 (1) Exon 3.2 PDB: E:5-32 ----------------------------------------Exon 3.4 PDB: E:73-109 Transcript 3 (1) Transcript 3 (2) ---------------------------Exon 3.3 PDB: E:32-72 UniProt: 75-115 ------------------------------------- Transcript 3 (2) 1v54 E 5 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109 14 24 34 44 54 64 74 84 94 104 Chain F from PDB Type:PROTEIN Length:98 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot Length:129 Alignment length:98 41 51 61 71 81 91 101 111 121 COX5B_BOVIN 32 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 129 SCOP domains d1v54f_ F: Cytochrome c oxidase Subunit F SCOP domains CATH domains 1v54F00 F:1-98 Cytochrome C Oxidase, chain F CATH domains Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) -------------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) --------------------------------------------------------------------COX5B_1 PDB: F:69-91 ------- PROSITE (3) PROSITE (4) -------------------------------------------------------------------------------------------------- PROSITE (4) PROSITE (5) COX5B_2 PDB: F:1-98 UniProt: 32-129 PROSITE (5) Transcript -------------------------------------------------------------------------------------------------- Transcript 1v54 F 1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 98 10 20 30 40 50 60 70 80 90 Chain G from PDB Type:PROTEIN Length:84 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot Length:97 Alignment length:84 22 32 42 52 62 72 82 92 CX6A2_BOVIN 13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK 96 SCOP domains d1v54g_ G: Mitochondrial cytochrome c oxidase subunit VIa SCOP domains CATH domains 1v54G00 G:1-84 Cytochrome C Oxidase, chain G CATH domains Pfam domains ------------------------------------------------------------------------------------ Pfam domains SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs) PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2) PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3) PROSITE (4) ------------------------------------------------------------------------------------ PROSITE (4) PROSITE (5) ------------------------------------------------------------------------------------ PROSITE (5) PROSITE (6) ------------------------------------------------------COX6A PDB: G:55-7------------ PROSITE (6) Transcript 4 (1) Exon 4.1 ---------------------------------------------Exon 4.3 PDB: G:59-84 Transcript 4 (1) Transcript 4 (2) ------------Exon 4.2 PDB: G:13-58 UniProt: 25-70 -------------------------- Transcript 4 (2) 1v54 G 1 ASAAKGDHGGtGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK 84 10| 20 30 40 50 60 70 80 11-TPO Chain H from PDB Type:PROTEIN Length:79 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot Length:86 Alignment length:79 17 27 37 47 57 67 77 CX6B1_BOVIN 8 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI 86 SCOP domains d1v54h_ H: Cytochrome c oxidase subunit h SCOP domains CATH domains 1v54H00 H:7-85 Cytochrome C oxidase subunit h CATH domains Pfam domains ------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) ------------------------------------------------------------------------------- PROSITE (3) PROSITE (4) -------------------CHCH PDB: H:26-72 UniProt: 27-73 ------------- PROSITE (4) Transcript ------------------------------------------------------------------------------- Transcript 1v54 H 7 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI 85 16 26 36 46 56 66 76 Chain I from PDB Type:PROTEIN Length:73 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot Length:74 Alignment length:73 11 21 31 41 51 61 71 COX6C_BOVIN 2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK 74 SCOP domains d1v54i_ I: Mitochondrial cytochrome c oxidase subunit VIc SCOP domains CATH domains -1v54I00 I:2-73 Cytochrome C Oxidase, chain I CATH domains Pfam domains ------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs) PROSITE ------------------------------------------------------------------------- PROSITE Transcript 1 Exon 1.2 PDB: I:1-36 UniProt: 1-37 Exon 1.3 PDB: I:37-73 UniProt: 38-74 Transcript 1 1v54 I 1 sTALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK 73 | 10 20 30 40 50 60 70 1-SAC Chain J from PDB Type:PROTEIN Length:58 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot Length:80 Alignment length:58 31 41 51 61 71 CX7A1_BOVIN 22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK 79 SCOP domains d1v54j_ J: Mitochondrial cytochrome c oxidase subunit VIIa SCOP domains CATH domains 1v54J00 J:1-58 Cytochrome C Oxidase, chain J CATH domains Pfam domains ---------------------------------------------------------- Pfam domains SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs) PROSITE ---------------------------------------------------------- PROSITE Transcript 2 (1) Exon 2.2 Exon 2.3 PDB: J:14-42 ---------------- Transcript 2 (1) Transcript 2 (2) -----------------------------------------Exon 2.4 Transcript 2 (2) 1v54 J 1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK 58 10 20 30 40 50 Chain K from PDB Type:PROTEIN Length:49 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot Length:80 Alignment length:49 39 49 59 69 COX7B_BOVIN 30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR 78 SCOP domains d1v54k_ K: SCOP domains CATH domains 1v54K00 K:6-54 Cytochrome C Oxidase, chain K CATH domains Pfam domains ------------------------------------------------- Pfam domains SAPs(SNPs) ------------------------------------------------- SAPs(SNPs) PROSITE ------------------------------------------------- PROSITE Transcript ------------------------------------------------- Transcript 1v54 K 6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR 54 15 25 35 45 Chain L from PDB Type:PROTEIN Length:46 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot Length:63 Alignment length:46 27 37 47 57 COX7C_BOVIN 18 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK 63 SCOP domains d1v54l_ L: SCOP domains CATH domains 1v54L00 L:2-47 Cytochrome C Oxidase, chain L CATH domains Pfam domains ---------------------------------------------- Pfam domains SAPs(SNPs) ---------------------------------------------- SAPs(SNPs) PROSITE ---------------------------------------------- PROSITE Transcript ---------------------------------------------- Transcript 1v54 L 2 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK 47 11 21 31 41 Chain M from PDB Type:PROTEIN Length:43 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot Length:70 Alignment length:43 34 44 54 64 COX8B_BOVIN 25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS 67 SCOP domains d1v54m_ M: SCOP domains CATH domains 1v54M00 M:1-43 CATH domains Pfam domains ------------------------------------------- Pfam domains SAPs(SNPs) ------------------------------------------- SAPs(SNPs) PROSITE ------------------------------------------- PROSITE Transcript ------------------------------------------- Transcript 1v54 M 1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS 43 10 20 30 40 Chain N from PDB Type:PROTEIN Length:514 aligned with COX1_BOVIN | P00396 from UniProtKB/Swiss-Prot Length:514 Alignment length:514 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 COX1_BOVIN 1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514 SCOP domains d1v54n_ N: Mitochondrial cytochrome c oxidase, subunit I SCOP domains CATH domains -1v54N00 N:2-514 Cytochrome C Oxidase, chain A CATH domains Pfam domains (1) -----------COX1-1v54N01 N:12-461 ----------------------------------------------------- Pfam domains (1) Pfam domains (2) -----------COX1-1v54N02 N:12-461 ----------------------------------------------------- Pfam domains (2) SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (1) COX1 PDB: N:1-514 UniProt: 1-514 PROSITE (1) PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COX1_CUB PDB: N:236-291 UniProt: 236-291 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2) Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1v54 N 1 mFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514 | 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 1-FME Chain O from PDB Type:PROTEIN Length:227 aligned with COX2_BOVIN | P68530 from UniProtKB/Swiss-Prot Length:227 Alignment length:227 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 COX2_BOVIN 1 MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227 SCOP domains d1v54o2 O:1-90 Mitochondrial cytochrome c oxidase, subunit II d1v54o1 O:91-227 Cytochrome c oxidase SCOP domains CATH domains -1v54O01 O:2-91 [code=1.10.287.90, no name defined] 1v54O02 O:92-227 Cupredoxins - blue copper proteins CATH domains Pfam domains (1) COX2_TM-1v54O03 O:1-83 -----------COX2-1v54O01 O:95-214 ------------- Pfam domains (1) Pfam domains (2) COX2_TM-1v54O04 O:1-83 -----------COX2-1v54O02 O:95-214 ------------- Pfam domains (2) SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) COX2_TM PDB: O:1-91 UniProt: 1-91 COX2_CUA PDB: O:92-225 UniProt: 92-225 -- PROSITE (2) PROSITE (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------COX2 PDB: O:159-207 UniProt: 159-207 -------------------- PROSITE (3) Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1v54 O 1 mAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML 227 | 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 1-FME Chain P from PDB Type:PROTEIN Length:259 aligned with COX3_BOVIN | P00415 from UniProtKB/Swiss-Prot Length:261 Alignment length:259 12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 COX3_BOVIN 3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261 SCOP domains d1v54p_ P: Mitochondrial cytochrome c oxidase, subunit III SCOP domains CATH domains 1v54P01 P:3-70 [code=1.10.287.70, no name defined] 1v54P02 P:71-261 [code=1.20.120.80, no name defined] CATH domains Pfam domains (1) ---COX3-1v54P01 P:6-261 Pfam domains (1) Pfam domains (2) ---COX3-1v54P02 P:6-261 Pfam domains (2) SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) -COX3 PDB: P:4-261 UniProt: 4-261 PROSITE (3) Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1v54 P 3 HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261 12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 Chain Q from PDB Type:PROTEIN Length:144 aligned with COX41_BOVIN | P00423 from UniProtKB/Swiss-Prot Length:169 Alignment length:144 35 45 55 65 75 85 95 105 115 125 135 145 155 165 COX41_BOVIN 26 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169 SCOP domains d1v54q_ Q: Mitochondrial cytochrome c oxidase subunit IV SCOP domains CATH domains 1v54Q00 Q:4-147 Cytochrome C Oxidase, chain D CATH domains Pfam domains (1) COX4-1v54Q01 Q:4-146 - Pfam domains (1) Pfam domains (2) COX4-1v54Q02 Q:4-146 - Pfam domains (2) SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1v54 Q 4 SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147 13 23 33 43 53 63 73 83 93 103 113 123 133 143 Chain R from PDB Type:PROTEIN Length:105 aligned with COX5A_BOVIN | P00426 from UniProtKB/Swiss-Prot Length:152 Alignment length:105 57 67 77 87 97 107 117 127 137 147 COX5A_BOVIN 48 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 152 SCOP domains d1v54r_ R: Cytochrome c oxidase subunit E SCOP domains CATH domains 1v54R00 R:5-109 [code=1.25.40.40, no name defined] CATH domains Pfam domains (1) COX5A-1v54R01 R:5-108 - Pfam domains (1) Pfam domains (2) COX5A-1v54R02 R:5-108 - Pfam domains (2) SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE --------------------------------------------------------------------------------------------------------- PROSITE Transcript 3 (1) Exon 3.2 PDB: R:5-32 ----------------------------------------Exon 3.4 PDB: R:73-109 Transcript 3 (1) Transcript 3 (2) ---------------------------Exon 3.3 PDB: R:32-72 UniProt: 75-115 ------------------------------------- Transcript 3 (2) 1v54 R 5 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV 109 14 24 34 44 54 64 74 84 94 104 Chain S from PDB Type:PROTEIN Length:98 aligned with COX5B_BOVIN | P00428 from UniProtKB/Swiss-Prot Length:129 Alignment length:98 41 51 61 71 81 91 101 111 121 COX5B_BOVIN 32 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 129 SCOP domains d1v54s_ S: Cytochrome c oxidase Subunit F SCOP domains CATH domains 1v54S00 S:1-98 Cytochrome C Oxidase, chain F CATH domains Pfam domains (1) COX5B-1v54S01 S:1-98 Pfam domains (1) Pfam domains (2) COX5B-1v54S02 S:1-98 Pfam domains (2) SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) -------------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) --------------------------------------------------------------------COX5B_1 PDB: S:69-91 ------- PROSITE (3) PROSITE (4) -------------------------------------------------------------------------------------------------- PROSITE (4) PROSITE (5) COX5B_2 PDB: S:1-98 UniProt: 32-129 PROSITE (5) Transcript -------------------------------------------------------------------------------------------------- Transcript 1v54 S 1 ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH 98 10 20 30 40 50 60 70 80 90 Chain T from PDB Type:PROTEIN Length:84 aligned with CX6A2_BOVIN | P07471 from UniProtKB/Swiss-Prot Length:97 Alignment length:84 22 32 42 52 62 72 82 92 CX6A2_BOVIN 13 ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK 96 SCOP domains d1v54t_ T: Mitochondrial cytochrome c oxidase subunit VIa SCOP domains CATH domains 1v54T00 T:1-84 Cytochrome C Oxidase, chain G CATH domains Pfam domains (1) COX6A-1v54T01 T:1-79 ----- Pfam domains (1) Pfam domains (2) COX6A-1v54T02 T:1-79 ----- Pfam domains (2) SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs) PROSITE (2) ------------------------------------------------------------------------------------ PROSITE (2) PROSITE (3) ------------------------------------------------------------------------------------ PROSITE (3) PROSITE (4) ------------------------------------------------------------------------------------ PROSITE (4) PROSITE (5) ------------------------------------------------------------------------------------ PROSITE (5) PROSITE (6) ------------------------------------------------------COX6A PDB: T:55-7------------ PROSITE (6) Transcript 4 (1) Exon 4.1 ---------------------------------------------Exon 4.3 PDB: T:59-84 Transcript 4 (1) Transcript 4 (2) ------------Exon 4.2 PDB: T:13-58 UniProt: 25-70 -------------------------- Transcript 4 (2) 1v54 T 1 ASAAKGDHGGtGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK 84 10| 20 30 40 50 60 70 80 11-TPO Chain U from PDB Type:PROTEIN Length:79 aligned with CX6B1_BOVIN | P00429 from UniProtKB/Swiss-Prot Length:86 Alignment length:79 17 27 37 47 57 67 77 CX6B1_BOVIN 8 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI 86 SCOP domains d1v54u_ U: Cytochrome c oxidase subunit h SCOP domains CATH domains 1v54U00 U:7-85 Cytochrome C oxidase subunit h CATH domains Pfam domains (1) -----------COX6B-1v54U01 U:18-82 --- Pfam domains (1) Pfam domains (2) -----------COX6B-1v54U02 U:18-82 --- Pfam domains (2) SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs) PROSITE (2) ------------------------------------------------------------------------------- PROSITE (2) PROSITE (3) ------------------------------------------------------------------------------- PROSITE (3) PROSITE (4) -------------------CHCH PDB: U:26-72 UniProt: 27-73 ------------- PROSITE (4) Transcript ------------------------------------------------------------------------------- Transcript 1v54 U 7 KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI 85 16 26 36 46 56 66 76 Chain V from PDB Type:PROTEIN Length:73 aligned with COX6C_BOVIN | P04038 from UniProtKB/Swiss-Prot Length:74 Alignment length:73 11 21 31 41 51 61 71 COX6C_BOVIN 2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK 74 SCOP domains d1v54v_ V: Mitochondrial cytochrome c oxidase subunit VIc SCOP domains CATH domains -1v54V00 V:2-73 Cytochrome C Oxidase, chain I CATH domains Pfam domains (1) COX6C-1v54V01 V:1-72 - Pfam domains (1) Pfam domains (2) COX6C-1v54V02 V:1-72 - Pfam domains (2) SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs) PROSITE ------------------------------------------------------------------------- PROSITE Transcript 1 Exon 1.2 PDB: V:1-36 UniProt: 1-37 Exon 1.3 PDB: V:37-73 UniProt: 38-74 Transcript 1 1v54 V 1 sTALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK 73 | 10 20 30 40 50 60 70 1-SAC Chain W from PDB Type:PROTEIN Length:58 aligned with CX7A1_BOVIN | P07470 from UniProtKB/Swiss-Prot Length:80 Alignment length:58 31 41 51 61 71 CX7A1_BOVIN 22 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK 79 SCOP domains d1v54w_ W: Mitochondrial cytochrome c oxidase subunit VIIa SCOP domains CATH domains 1v54W00 W:1-58 Cytochrome C Oxidase, chain J CATH domains Pfam domains (1) -COX7a-1v54W01 W:2-58 Pfam domains (1) Pfam domains (2) -COX7a-1v54W02 W:2-58 Pfam domains (2) SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs) PROSITE ---------------------------------------------------------- PROSITE Transcript 2 (1) Exon 2.2 Exon 2.3 PDB: W:14-42 ---------------- Transcript 2 (1) Transcript 2 (2) -----------------------------------------Exon 2.4 Transcript 2 (2) 1v54 W 1 FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK 58 10 20 30 40 50 Chain X from PDB Type:PROTEIN Length:49 aligned with COX7B_BOVIN | P13183 from UniProtKB/Swiss-Prot Length:80 Alignment length:49 39 49 59 69 COX7B_BOVIN 30 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR 78 SCOP domains d1v54x_ X: SCOP domains CATH domains 1v54X00 X:6-54 Cytochrome C Oxidase, chain K CATH domains Pfam domains (1) COX7B-1v54X01 X:6-54 Pfam domains (1) Pfam domains (2) COX7B-1v54X02 X:6-54 Pfam domains (2) SAPs(SNPs) ------------------------------------------------- SAPs(SNPs) PROSITE ------------------------------------------------- PROSITE Transcript ------------------------------------------------- Transcript 1v54 X 6 APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR 54 15 25 35 45 Chain Y from PDB Type:PROTEIN Length:46 aligned with COX7C_BOVIN | P00430 from UniProtKB/Swiss-Prot Length:63 Alignment length:46 27 37 47 57 COX7C_BOVIN 18 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK 63 SCOP domains d1v54y_ Y: SCOP domains CATH domains 1v54Y00 Y:2-47 Cytochrome C Oxidase, chain L CATH domains Pfam domains (1) COX7C-1v54Y01 Y:2-47 Pfam domains (1) Pfam domains (2) COX7C-1v54Y02 Y:2-47 Pfam domains (2) SAPs(SNPs) ---------------------------------------------- SAPs(SNPs) PROSITE ---------------------------------------------- PROSITE Transcript ---------------------------------------------- Transcript 1v54 Y 2 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK 47 11 21 31 41 Chain Z from PDB Type:PROTEIN Length:43 aligned with COX8B_BOVIN | P10175 from UniProtKB/Swiss-Prot Length:70 Alignment length:43 34 44 54 64 COX8B_BOVIN 25 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS 67 SCOP domains d1v54z_ Z: SCOP domains CATH domains 1v54Z00 Z:1-43 CATH domains Pfam domains (1) COX8-1v54Z01 Z:1-43 Pfam domains (1) Pfam domains (2) COX8-1v54Z02 Z:1-43 Pfam domains (2) SAPs(SNPs) ------------------------------------------- SAPs(SNPs) PROSITE ------------------------------------------- PROSITE Transcript ------------------------------------------- Transcript 1v54 Z 1 ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS 43 10 20 30 40
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Asymmetric/Biological Unit
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Asymmetric/Biological Unit
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Asymmetric/Biological Unit
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Asymmetric/Biological Unit(hide GO term definitions) Chain A,N (COX1_BOVIN | P00396)
Chain B,O (COX2_BOVIN | P68530)
Chain C,P (COX3_BOVIN | P00415)
Chain D,Q (COX41_BOVIN | P00423)
Chain E,R (COX5A_BOVIN | P00426)
Chain F,S (COX5B_BOVIN | P00428)
Chain G,T (CX6A2_BOVIN | P07471)
Chain H,U (CX6B1_BOVIN | P00429)
Chain I,V (COX6C_BOVIN | P04038)
Chain J,W (CX7A1_BOVIN | P07470)
Chain K,X (COX7B_BOVIN | P13183)
Chain L,Y (COX7C_BOVIN | P00430)
Chain M,Z (COX8B_BOVIN | P10175)
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