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3ABM
Biol. Unit 2
Info
Asym.Unit (677 KB)
Biol.Unit 1 (334 KB)
Biol.Unit 2 (331 KB)
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(1)
Title
:
BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE (200-S X-RAY EXPOSURE DATASET)
Authors
:
H. Aoyama, K. Muramoto, K. Shinzawa-Itoh, E. Yamashita, T. Tsukihara, T. Ogura, S. Yoshikawa
Date
:
16 Dec 09 (Deposition) - 19 Jan 10 (Release) - 19 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M (1x)
Biol. Unit 2: N,O,P,Q,R,S,T,U,V,W,X,Y,Z (1x)
Keywords
:
Oxidoreductase, Copper, Electron Transport, Formylation, Heme, Iron, Membrane, Mitochondrion, Mitochondrion Inner Membrane, Respiratory Chain, Transmembrane, Transport, Acetylation, Transit Peptide, Zinc, Isopeptide Bond, Ubl Conjugation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Aoyama, K. Muramoto, K. Shinzawa-Itoh, K. Hirata, E. Yamashita, T. Tsukihara, T. Ogura, S. Yoshikawa
A Peroxide Bridge Between Fe And Cu Ions In The O2 Reduction Site Of Fully Oxidized Cytochrome C Oxidase Could Suppress The Proton Pump
Proc. Natl. Acad. Sci. Usa V. 106 2165 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(13, 27)
Info
All Hetero Components
01a: CARDIOLIPIN (CDLa)
01b: CARDIOLIPIN (CDLb)
01c: CARDIOLIPIN (CDLc)
01d: CARDIOLIPIN (CDLd)
02a: CHOLIC ACID (CHDa)
02b: CHOLIC ACID (CHDb)
02c: CHOLIC ACID (CHDc)
02d: CHOLIC ACID (CHDd)
02e: CHOLIC ACID (CHDe)
02f: CHOLIC ACID (CHDf)
02g: CHOLIC ACID (CHDg)
02h: CHOLIC ACID (CHDh)
04a: DINUCLEAR COPPER ION (CUAa)
04b: DINUCLEAR COPPER ION (CUAb)
03a: COPPER (II) ION (CUa)
04b: COPPER (II) ION (CUb)
05a: DECYL-BETA-D-MALTOPYRANOSIDE (DMUa)
05b: DECYL-BETA-D-MALTOPYRANOSIDE (DMUb)
05c: DECYL-BETA-D-MALTOPYRANOSIDE (DMUc)
05d: DECYL-BETA-D-MALTOPYRANOSIDE (DMUd)
06a: N-FORMYLMETHIONINE (FMEa)
06b: N-FORMYLMETHIONINE (FMEb)
06c: N-FORMYLMETHIONINE (FMEc)
06d: N-FORMYLMETHIONINE (FMEd)
07a: HEME-A (HEAa)
07b: HEME-A (HEAb)
07c: HEME-A (HEAc)
07d: HEME-A (HEAd)
08a: MAGNESIUM ION (MGa)
08b: MAGNESIUM ION (MGb)
09a: SODIUM ION (NAa)
09b: SODIUM ION (NAb)
10a: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKa)
10b: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKb)
10c: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKc)
10d: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKd)
10e: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKe)
10f: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKf)
11a: PEROXIDE ION (PERa)
11b: PEROXIDE ION (PERb)
12a: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVa)
12b: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVb)
12c: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVc)
12d: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVd)
12e: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVe)
12f: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVf)
12g: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVg)
12h: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVh)
13a: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIME... (PSCa)
13b: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIME... (PSCb)
14a: TRISTEAROYLGLYCEROL (TGLa)
14b: TRISTEAROYLGLYCEROL (TGLb)
14c: TRISTEAROYLGLYCEROL (TGLc)
14d: TRISTEAROYLGLYCEROL (TGLd)
14e: TRISTEAROYLGLYCEROL (TGLe)
14f: TRISTEAROYLGLYCEROL (TGLf)
15a: PHOSPHOTHREONINE (TPOa)
15b: PHOSPHOTHREONINE (TPOb)
16a: UNKNOWN ATOM OR ION (UNXa)
16b: UNKNOWN ATOM OR ION (UNXb)
17a: ZINC ION (ZNa)
17b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CDL
2
Ligand/Ion
CARDIOLIPIN
2
CHD
4
Ligand/Ion
CHOLIC ACID
3
CU
-1
Ligand/Ion
COPPER (II) ION
4
CUA
1
Ligand/Ion
DINUCLEAR COPPER ION
5
DMU
2
Ligand/Ion
DECYL-BETA-D-MALTOPYRANOSIDE
6
FME
2
Mod. Amino Acid
N-FORMYLMETHIONINE
7
HEA
2
Ligand/Ion
HEME-A
8
MG
-1
Ligand/Ion
MAGNESIUM ION
9
NA
-1
Ligand/Ion
SODIUM ION
10
PEK
3
Ligand/Ion
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
11
PER
1
Ligand/Ion
PEROXIDE ION
12
PGV
4
Ligand/Ion
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
13
PSC
1
Ligand/Ion
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
14
TGL
3
Ligand/Ion
TRISTEAROYLGLYCEROL
15
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
16
UNX
1
Ligand/Ion
UNKNOWN ATOM OR ION
17
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: BC2 (SOFTWARE)
02: BC3 (SOFTWARE)
03: CC3 (SOFTWARE)
04: CC4 (SOFTWARE)
05: CC5 (SOFTWARE)
06: DC1 (SOFTWARE)
07: DC2 (SOFTWARE)
08: DC3 (SOFTWARE)
09: DC4 (SOFTWARE)
10: DC5 (SOFTWARE)
11: DC6 (SOFTWARE)
12: DC7 (SOFTWARE)
13: DC8 (SOFTWARE)
14: DC9 (SOFTWARE)
15: EC1 (SOFTWARE)
16: EC2 (SOFTWARE)
17: EC3 (SOFTWARE)
18: EC4 (SOFTWARE)
19: EC5 (SOFTWARE)
20: EC6 (SOFTWARE)
21: EC7 (SOFTWARE)
22: EC8 (SOFTWARE)
23: EC9 (SOFTWARE)
24: FC1 (SOFTWARE)
25: FC2 (SOFTWARE)
26: FC3 (SOFTWARE)
27: FC4 (SOFTWARE)
28: FC5 (SOFTWARE)
29: FC6 (SOFTWARE)
30: FC7 (SOFTWARE)
31: FC8 (SOFTWARE)
32: FC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC2
SOFTWARE
MET A:271 , GLN B:59 , GLU B:62 , THR B:63 , THR B:66 , HOH B:2375 , ARG T:14 , ARG T:17 , PHE T:18 , GLY T:22 , PEK T:1265 , HOH T:3302
BINDING SITE FOR RESIDUE CHD B 1086
02
BC3
SOFTWARE
HIS A:233 , ASP A:300 , THR A:301 , TYR A:304 , TRP C:99 , HIS C:103 , CDL T:1269
BINDING SITE FOR RESIDUE CHD C 525
03
CC3
SOFTWARE
HIS C:158 , GLN C:161 , TYR C:172 , ARG G:17 , PHE G:21 , GLY G:22 , TRP G:36 , CDL G:269 , SER N:279 , GLN O:59 , THR O:66 , CHD O:229
BINDING SITE FOR RESIDUE PEK G 265
04
CC4
SOFTWARE
LEU C:127 , LEU C:131 , LEU C:138 , VAL C:142 , LEU G:23 , SER G:27 , LEU G:30 , CYS G:31 , ASN G:34 , LEU G:37 , HIS G:38 , ARG G:42 , PEK G:265 , PHE N:282 , ILE N:286 , ASP N:300 , SER N:307 , ILE N:311 , LEU O:78 , TYR O:85
BINDING SITE FOR RESIDUE CDL G 269
05
CC5
SOFTWARE
SER G:2 , ALA G:3 , LYS G:5 , HIS G:8 , HOH G:4355 , HOH G:4660 , PHE N:282 , LYS P:77 , ARG P:80 , TYR P:81 , ILE P:84 , THR P:95 , PHE P:98 , TRP P:240 , VAL P:247 , PHE P:251
BINDING SITE FOR RESIDUE PEK G 1263
06
DC1
SOFTWARE
HIS N:240 , HIS N:290 , HIS N:291 , PER N:520
BINDING SITE FOR RESIDUE CU N 517
07
DC2
SOFTWARE
HIS N:240 , VAL N:243 , HIS N:291 , HEA N:516 , CU N:517
BINDING SITE FOR RESIDUE PER N 520
08
DC3
SOFTWARE
HIS N:368 , ASP N:369 , HOH N:3032 , GLU O:198 , HOH O:3031 , HOH O:3033
BINDING SITE FOR RESIDUE MG N 1518
09
DC4
SOFTWARE
GLU N:40 , GLN N:43 , GLY N:45 , SER N:441 , HOH N:3026 , HOH N:3060
BINDING SITE FOR RESIDUE NA N 1519
10
DC5
SOFTWARE
MET N:28 , THR N:31 , SER N:34 , ILE N:37 , ARG N:38 , TYR N:54 , VAL N:58 , HIS N:61 , ALA N:62 , MET N:65 , VAL N:70 , GLY N:125 , TRP N:126 , TYR N:371 , PHE N:377 , HIS N:378 , SER N:382 , VAL N:386 , PHE N:393 , PHE N:425 , GLN N:428 , ARG N:438 , ARG N:439 , MET N:468 , HOH N:3005 , HOH N:3036 , HOH N:3045
BINDING SITE FOR RESIDUE HEA N 515
11
DC6
SOFTWARE
TRP N:126 , TRP N:236 , VAL N:243 , TYR N:244 , HIS N:290 , HIS N:291 , THR N:309 , ALA N:313 , THR N:316 , GLY N:317 , GLY N:352 , LEU N:353 , GLY N:355 , ILE N:356 , LEU N:358 , ALA N:359 , ASP N:364 , HIS N:368 , VAL N:373 , HIS N:376 , PHE N:377 , VAL N:380 , LEU N:381 , ARG N:438 , PER N:520 , HOH N:3007 , HOH N:3016 , HOH N:3034 , HOH N:3044 , ILE O:72
BINDING SITE FOR RESIDUE HEA N 516
12
DC7
SOFTWARE
ASN N:406 , THR N:408 , TRP N:409 , ILE N:412 , HOH N:3396 , HOH N:4418 , HOH N:4682 , ALA Q:84 , PHE Q:87 , HIS X:10 , PRO Z:12 , ALA Z:16 , LEU Z:19 , SER Z:20 , HOH Z:3153
BINDING SITE FOR RESIDUE PGV N 1524
13
DC8
SOFTWARE
PHE N:94 , PRO N:95 , ARG N:96 , MET N:97 , MET N:100 , HOH N:3138 , HOH N:3226 , HIS P:9 , ASN P:50 , MET P:54 , TRP P:57 , TRP P:58 , GLU P:64 , HIS P:71 , LEU P:79 , GLY P:82 , PEK P:1264
BINDING SITE FOR RESIDUE PGV N 1266
14
DC9
SOFTWARE
HOH C:4575 , ALA G:1 , HOH G:4754 , ASP N:298 , HOH N:4084 , HOH N:4766 , THR P:95 , TRP P:99 , HIS P:103 , ALA P:107 , CHD P:1525
BINDING SITE FOR RESIDUE PGV N 1268
15
EC1
SOFTWARE
HIS O:161 , CYS O:196 , GLU O:198 , CYS O:200 , HIS O:204 , MET O:207
BINDING SITE FOR RESIDUE CUA O 228
16
EC2
SOFTWARE
ARG G:14 , ARG G:17 , PEK G:265 , HOH G:2302 , MET N:271 , GLU O:62 , THR O:63 , THR O:66 , HOH O:3375
BINDING SITE FOR RESIDUE CHD O 229
17
EC3
SOFTWARE
ASN N:422 , PHE N:430 , LEU N:433 , LEU O:7 , LEU O:28 , PHE O:32 , SER O:35 , LEU O:39 , HOH Q:4401
BINDING SITE FOR RESIDUE TGL O 1521
18
EC4
SOFTWARE
TRP N:334 , LYS N:411 , PHE N:414 , HOH N:4407 , LEU O:39 , ILE O:42 , THR O:47 , LYS O:49 , ARG Q:73 , SER Q:74 , GLU Q:77 , TRP Q:78 , HOH Q:4568
BINDING SITE FOR RESIDUE TGL O 1523
19
EC5
SOFTWARE
TRP P:34 , MET P:40 , HOH P:4208 , SER T:61 , TRP T:62 , GLY T:63 , PHE T:69
BINDING SITE FOR RESIDUE DMU P 1272
20
EC6
SOFTWARE
HIS N:233 , ASP N:300 , THR N:301 , TYR N:304 , PGV N:1268 , TRP P:99 , HIS P:103 , HOH P:4549
BINDING SITE FOR RESIDUE CHD P 1525
21
EC7
SOFTWARE
HIS N:151 , LEU N:215 , PGV N:1266 , TRP P:34 , TYR P:181 , TYR P:182 , ALA P:184 , PHE P:186 , THR P:187 , ILE P:188 , PHE P:198 , TRP T:62 , THR T:68 , PHE T:69 , PHE T:70 , HIS T:71 , ASN T:76
BINDING SITE FOR RESIDUE PEK P 1264
22
EC8
SOFTWARE
MET P:54 , TRP P:58 , VAL P:61 , SER P:65 , THR P:66 , HIS P:207 , ILE P:210 , THR P:213 , PHE P:214 , ARG P:221 , HIS P:226 , PHE P:227 , HIS P:231 , PHE P:233 , GLY P:234 , CDL P:1270 , HOH P:3214 , HOH P:3350 , HOH S:3130
BINDING SITE FOR RESIDUE PGV P 1267
23
EC9
SOFTWARE
MET P:51 , TYR P:55 , ARG P:59 , ARG P:63 , PHE P:67 , VAL P:217 , PHE P:220 , ARG P:221 , LYS P:224 , HIS P:226 , PGV P:1267 , HOH P:4189 , THR W:27
BINDING SITE FOR RESIDUE CDL P 1270
24
FC1
SOFTWARE
ARG P:156 , PHE P:164 , LEU P:223 , PHE W:1
BINDING SITE FOR RESIDUE CHD P 1271
25
FC2
SOFTWARE
PHE N:321 , LEU N:324 , HOH N:4424 , ILE O:41 , HIS O:52 , MET O:56 , ASP O:57 , VAL O:61 , TRP O:65 , GLU R:6 , ASP R:8 , PHE R:11 , ASP R:40 , LEU R:41 , HOH R:3122 , HOH R:3394 , ARG V:10 , ALA V:14
BINDING SITE FOR RESIDUE PSC R 1230
26
FC3
SOFTWARE
CYS S:60 , CYS S:62 , CYS S:82 , CYS S:85
BINDING SITE FOR RESIDUE ZN S 99
27
FC4
SOFTWARE
LYS C:77 , ARG C:80 , TYR C:81 , ILE C:84 , VAL C:91 , THR C:95 , PHE C:98 , VAL C:247 , HOH C:4713 , SER T:2 , ALA T:3 , LYS T:5 , GLY T:6 , HIS T:8
BINDING SITE FOR RESIDUE PEK T 263
28
FC5
SOFTWARE
CHD B:1086 , HIS P:158 , GLN P:161 , THR P:168 , HOH P:4242 , ARG T:17 , TRP T:36 , CDL T:1269
BINDING SITE FOR RESIDUE PEK T 1265
29
FC6
SOFTWARE
PHE A:282 , ASP A:300 , SER A:307 , ILE A:311 , LEU B:73 , LEU B:78 , LEU B:81 , ARG B:82 , TYR B:85 , CHD C:525 , LEU P:131 , TYR P:253 , VAL P:254 , TRP P:258 , LEU T:23 , SER T:27 , LEU T:30 , CYS T:31 , ASN T:34 , HIS T:38 , PEK T:1265 , HOH T:4409
BINDING SITE FOR RESIDUE CDL T 1269
30
FC7
SOFTWARE
LEU N:7 , PHE N:8 , TYR W:32 , ARG W:33 , THR W:37
BINDING SITE FOR RESIDUE CHD W 1060
31
FC8
SOFTWARE
THR N:17 , LEU N:18 , LEU N:21 , PHE N:22 , TRP N:81 , PRO N:106 , LEU N:113 , PHE N:400 , ILE Y:11 , PRO Y:12 , PHE Y:13 , SER Y:14 , ARG Y:20 , MET Y:24 , MET Y:25 , PHE Y:28 , PHE Y:29 , HOH Y:4350
BINDING SITE FOR RESIDUE TGL Y 1522
32
FC9
SOFTWARE
LEU Q:95 , TRP Q:98 , TYR Q:102 , LEU Z:27 , LEU Z:28 , GLY Z:31 , TRP Z:32 , TYR Z:35 , HIS Z:36
BINDING SITE FOR RESIDUE DMU Z 1526
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(9, 9)
Info
All PROSITE Patterns/Profiles
1: COX2_TM (O:1-91)
2: COX1 (N:1-514)
3: COX3 (P:4-261)
4: CHCH (U:26-72)
5: COX6A (T:55-72)
6: COX2_CUA (O:92-225)
7: COX5B_1 (S:69-91)
8: COX2 (O:159-207)
9: COX1_CUB (N:236-291)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COX2_TM
PS50999
Cytochrome oxidase subunit II transmembrane region profile.
COX2_BOVIN
1-91
1
-
O:1-91
2
COX1
PS50855
Cytochrome oxidase subunit I profile.
COX1_BOVIN
1-514
1
-
N:1-514
3
COX3
PS50253
Heme-copper oxidase subunit III family profile.
COX3_BOVIN
4-261
1
-
P:4-261
4
CHCH
PS51808
Coiled coil-helix-coiled coil-helix (CHCH) domain profile.
CX6B1_BOVIN
27-73
1
-
U:26-72
5
COX6A
PS01329
Cytochrome c oxidase subunit VIa signature.
CX6A2_BOVIN
67-84
1
-
T:55-72
6
COX2_CUA
PS50857
Cytochrome oxidase subunit II copper A binding domain profile.
COX2_BOVIN
92-225
1
-
O:92-225
7
COX5B_1
PS00848
Cytochrome c oxidase subunit Vb, zinc binding region signature.
COX5B_BOVIN
100-122
1
-
S:69-91
8
COX2
PS00078
CO II and nitrous oxide reductase dinuclear copper centers signature.
COX2_BOVIN
159-207
1
-
O:159-207
9
COX1_CUB
PS00077
Heme-copper oxidase catalytic subunit, copper B binding region signature.
COX1_BOVIN
236-291
1
-
N:236-291
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(14, 28)
Info
All SCOP Domains
01a: SCOP_d3abme_ (E:)
01b: SCOP_d3abmr_ (R:)
02a: SCOP_d3abmh_ (H:)
02b: SCOP_d3abmu_ (U:)
03a: SCOP_d3abmb2 (B:91-227)
03b: SCOP_d3abmo2 (O:91-227)
04a: SCOP_d3abma_ (A:)
04b: SCOP_d3abmn_ (N:)
05a: SCOP_d3abmc_ (C:)
05b: SCOP_d3abmp_ (P:)
06a: SCOP_d3abmd_ (D:)
06b: SCOP_d3abmq_ (Q:)
07a: SCOP_d3abmg_ (G:)
07b: SCOP_d3abmt_ (T:)
08a: SCOP_d3abmi_ (I:)
08b: SCOP_d3abmv_ (V:)
09a: SCOP_d3abmj_ (J:)
09b: SCOP_d3abmw_ (W:)
10a: SCOP_d3abmk_ (K:)
10b: SCOP_d3abmx_ (X:)
11a: SCOP_d3abml_ (L:)
11b: SCOP_d3abmy_ (Y:)
12a: SCOP_d3abmm_ (M:)
12b: SCOP_d3abmz_ (Z:)
13a: SCOP_d3abmb1 (B:1-90)
13b: SCOP_d3abmo1 (O:1-90)
14a: SCOP_d3abmf_ (F:)
14b: SCOP_d3abms_ (S:)
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Classes
(
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Folds
(
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(
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Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Cytochrome c oxidase subunit E
(25)
Family
:
Cytochrome c oxidase subunit E
(25)
Protein domain
:
Cytochrome c oxidase subunit E
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
01a
d3abme_
E:
01b
d3abmr_
R:
Fold
:
Cytochrome c oxidase subunit h
(26)
Superfamily
:
Cytochrome c oxidase subunit h
(26)
Family
:
Cytochrome c oxidase subunit h
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
02a
d3abmh_
H:
02b
d3abmu_
U:
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Periplasmic domain of cytochrome c oxidase subunit II
(70)
Protein domain
:
Cytochrome c oxidase
(62)
Cow (Bos taurus) [TaxId: 9913]
(24)
03a
d3abmb2
B:91-227
03b
d3abmo2
O:91-227
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Cytochrome c oxidase subunit I-like
(65)
Superfamily
:
Cytochrome c oxidase subunit I-like
(65)
Family
:
Cytochrome c oxidase subunit I-like
(65)
Protein domain
:
automated matches
(24)
Cow (Bos taurus) [TaxId: 9913]
(18)
04a
d3abma_
A:
04b
d3abmn_
N:
Fold
:
Cytochrome c oxidase subunit III-like
(29)
Superfamily
:
Cytochrome c oxidase subunit III-like
(29)
Family
:
Cytochrome c oxidase subunit III-like
(29)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit III
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
05a
d3abmc_
C:
05b
d3abmp_
P:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
06a
d3abmd_
D:
06b
d3abmq_
Q:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
07a
d3abmg_
G:
07b
d3abmt_
T:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
08a
d3abmi_
I:
08b
d3abmv_
V:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
09a
d3abmj_
J:
09b
d3abmw_
W:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
10a
d3abmk_
K:
10b
d3abmx_
X:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
11a
d3abml_
L:
11b
d3abmy_
Y:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
12a
d3abmm_
M:
12b
d3abmz_
Z:
Fold
:
Transmembrane helix hairpin
(84)
Superfamily
:
Cytochrome c oxidase subunit II-like, transmembrane region
(66)
Family
:
Cytochrome c oxidase subunit II-like, transmembrane region
(57)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit II
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
13a
d3abmb1
B:1-90
13b
d3abmo1
O:1-90
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Rubredoxin-like
(127)
Family
:
Cytochrome c oxidase Subunit F
(25)
Protein domain
:
Cytochrome c oxidase Subunit F
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
14a
d3abmf_
F:
14b
d3abms_
S:
[
close SCOP info
]
CATH Domains
(15, 30)
Info
all CATH domains
01a: CATH_3abmG00 (G:1-84)
01b: CATH_3abmT00 (T:1-84)
02a: CATH_3abmI00 (I:3-73)
02b: CATH_3abmV00 (V:3-73)
03a: CATH_3abmJ00 (J:1-57)
03b: CATH_3abmW00 (W:1-57)
04a: CATH_3abmK00 (K:6-54)
04b: CATH_3abmX00 (X:6-54)
05a: CATH_3abmL00 (L:2-47)
05b: CATH_3abmY00 (Y:2-47)
06a: CATH_3abmM00 (M:1-43)
06b: CATH_3abmZ00 (Z:1-43)
07a: CATH_3abmE00 (E:6-109)
07b: CATH_3abmR00 (R:6-109)
08a: CATH_3abmH00 (H:11-85)
08b: CATH_3abmU00 (U:11-85)
09a: CATH_3abmD00 (D:4-147)
09b: CATH_3abmQ00 (Q:4-147)
10a: CATH_3abmC01 (C:3-70)
10b: CATH_3abmP01 (P:3-70)
11a: CATH_3abmB01 (B:2-91)
11b: CATH_3abmO01 (O:2-91)
12a: CATH_3abmA00 (A:2-514)
12b: CATH_3abmN00 (N:2-514)
13a: CATH_3abmC02 (C:71-261)
13b: CATH_3abmP02 (P:71-261)
14a: CATH_3abmF00 (F:4-96)
14b: CATH_3abmS00 (S:4-96)
15a: CATH_3abmB02 (B:92-227)
15b: CATH_3abmO02 (O:92-227)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Cytochrome C Oxidase; Chain G
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain G
(22)
Bovine (Bos taurus)
(7)
01a
3abmG00
G:1-84
01b
3abmT00
T:1-84
Topology
:
Cytochrome C Oxidase; Chain I
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain I
(22)
Bovine (Bos taurus)
(7)
02a
3abmI00
I:3-73
02b
3abmV00
V:3-73
Topology
:
Cytochrome C Oxidase; Chain J
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain J
(22)
Bovine (Bos taurus)
(7)
03a
3abmJ00
J:1-57
03b
3abmW00
W:1-57
Topology
:
Cytochrome C Oxidase; Chain K
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain K
(22)
Bovine (Bos taurus)
(7)
04a
3abmK00
K:6-54
04b
3abmX00
X:6-54
Topology
:
Cytochrome C Oxidase; Chain L
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain L
(22)
Bovine (Bos taurus)
(7)
05a
3abmL00
L:2-47
05b
3abmY00
Y:2-47
Topology
:
Cytochrome C Oxidase; Chain M
(30)
Homologous Superfamily
:
Cytochrome C Oxidase, chain M
(29)
Bovine (Bos taurus)
(7)
06a
3abmM00
M:1-43
06b
3abmZ00
Z:1-43
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.40, no name defined]
(22)
Bovine (Bos taurus)
(7)
07a
3abmE00
E:6-109
07b
3abmR00
R:6-109
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Cytochrome C oxidase subunit h
(22)
Bovine (Bos taurus)
(7)
08a
3abmH00
H:11-85
08b
3abmU00
U:11-85
Topology
:
Cytochrome C Oxidase; Chain D
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain D
(22)
Bovine (Bos taurus)
(7)
09a
3abmD00
D:4-147
09b
3abmQ00
Q:4-147
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.70, no name defined]
(106)
Bovine (Bos taurus)
(7)
10a
3abmC01
C:3-70
10b
3abmP01
P:3-70
Homologous Superfamily
:
[code=1.10.287.90, no name defined]
(33)
Bovine (Bos taurus)
(7)
11a
3abmB01
B:2-91
11b
3abmO01
O:2-91
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome C Oxidase; Chain A
(41)
Homologous Superfamily
:
Cytochrome C Oxidase, chain A
(41)
Bovine (Bos taurus)
(7)
12a
3abmA00
A:2-514
12b
3abmN00
N:2-514
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.80, no name defined]
(26)
Bovine (Bos taurus)
(7)
13a
3abmC02
C:71-261
13b
3abmP02
P:71-261
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Cytochrome C Oxidase; Chain F
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain F
(22)
Bovine (Bos taurus)
(7)
14a
3abmF00
F:4-96
14b
3abmS00
S:4-96
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Bovine (Bos taurus)
(7)
15a
3abmB02
B:92-227
15b
3abmO02
O:92-227
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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