2UZX - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: CRYSTAL FORM I

Authors :   H. H. Niemann, V. Jager, P. J. G. Butler, J. Van Den Heuvel, S. Schmidt, D. Ferraris, E. Gherardi, D. W. Heinz

Date :   02 May 07 (Deposition) - 07 Aug 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Signaling Protein/Receptor, Leucine Rich Repeat, Receptor Ectodomain, Hepatocyte Growth Factor Receptor, Signaling Protein, Atp-Binding, Transferase, Polymorphism, Glycoprotein, Virulence Factor, Disease Mutation, Nucleotide-Binding, Transmembrane, Proto-Oncogene, Phosphorylation, Leucine-Rich Repeat, Alternative Splicing, Tyrosine-Protein Kinase, Chromosomal Rearrangement, Lrr, Hgfr, Kinase, Membrane, Receptor, Internalin, Signaling Protein/Receptor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. H. Niemann, V. Jager, P. J. G. Butler, J. Van Den Heuvel, S. Schmidt, D. Ferraris, E. Gherardi, D. W. Heinz
Structure Of The Human Receptor Tyrosine Kinase Met In Complex With The Listeria Invasion Protein Inlb
Cell(Cambridge, Mass. ) V. 130 235 2007
PubMed-ID: 17662939 | Reference-DOI: 10.1016/J.CELL.2007.05.037

Molecule 1 - INTERNALIN B
	Chains	:	A, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PETM30
	Expression System Strain	:	BL21 CODONPLUS (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	INTERNALIN DOMAIN (CAP, LRR, IR), INLB321, RESIDUES 36-320
	Organism Scientific	:	LISTERIA MONOCYTOGENES
	Organism Taxid	:	169963
	Strain	:	EGD-E
	Synonym	:	INLB
	Variant	:	SEROVAR 12A

Molecule 2 - HEPATOCYTE GROWTH FACTOR RECEPTOR
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Cell Line	:	CHO LEC 3.2.8.1
	Expression System Plasmid	:	PA71D
	Expression System Taxid	:	10029
	Expression System Vector Type	:	PLASMID
	Fragment	:	SEMA, PSI, IG1, MET741, RESIDUES 25-740
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	CONTAINS IG2 AND 6HIS TAG, WHICH ARE POORLY ORDERED AND NOT MODELED, MET WAS ENZYMATICALLY DEGLYCOSYLATED WITH ENDOH
	Synonym	:	HGF RECEPTOR, SCATTER FACTOR RECEPTOR, SF RECEPTOR, HGF/SF RECEPTOR, MET PROTO-ONCOGENE TYROSINE KINASE, C-MET

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2UZX)

(no "Site" information available for 2UZX)

Asymmetric Unit

No.	Residues
1	B:133	-	B:141
2	B:172	-	B:175
3	B:298	-	B:363
4	B:520	-	B:538
5	B:526	-	B:561
6	B:529	-	B:545
7	B:541	-	B:551
8	B:610	-	B:624
9	D:133	-	D:141
10	D:172	-	D:175
11	D:298	-	D:363
12	D:520	-	D:538
13	D:526	-	D:561
14	D:529	-	D:545
15	D:541	-	D:551
16	D:610	-	D:624

Asymmetric Unit

No.	Residues
1	Lys A:280	-	Pro A:281
2	Phe B:569	-	Pro B:570
3	Lys C:280	-	Pro C:281
4	Phe D:569	-	Pro D:570

Asymmetric Unit (9, 18)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_041738	R	143	Q	MET_HUMAN	Polymorphism	35469582	B/D	R	143	Q
2	UniProt	VAR_064855	H	150	Y	MET_HUMAN	Unclassified	---	B/D	H	150	Y
3	UniProt	VAR_041739	S	156	L	MET_HUMAN	Polymorphism	56311081	B/D	S	156	L
4	UniProt	VAR_041740	E	168	D	MET_HUMAN	Polymorphism	55985569	B/D	E	168	D
5	UniProt	VAR_032478	L	238	S	MET_HUMAN	Polymorphism	34349517	B/D	L	238	S
6	UniProt	VAR_032479	I	316	M	MET_HUMAN	Polymorphism	35225896	B/D	I	316	M
7	UniProt	VAR_006285	A	320	V	MET_HUMAN	Polymorphism	35776110	B/D	A	320	V
8	UniProt	VAR_032480	N	375	S	MET_HUMAN	Polymorphism	33917957	B/D	N	375	S
9	UniProt	VAR_064856	C	385	Y	MET_HUMAN	Polymorphism	752055485	B/D	C	385	Y

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (9, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_041738	R	143	Q	MET_HUMAN	Polymorphism	35469582	B	R	143	Q
2	UniProt	VAR_064855	H	150	Y	MET_HUMAN	Unclassified	---	B	H	150	Y
3	UniProt	VAR_041739	S	156	L	MET_HUMAN	Polymorphism	56311081	B	S	156	L
4	UniProt	VAR_041740	E	168	D	MET_HUMAN	Polymorphism	55985569	B	E	168	D
5	UniProt	VAR_032478	L	238	S	MET_HUMAN	Polymorphism	34349517	B	L	238	S
6	UniProt	VAR_032479	I	316	M	MET_HUMAN	Polymorphism	35225896	B	I	316	M
7	UniProt	VAR_006285	A	320	V	MET_HUMAN	Polymorphism	35776110	B	A	320	V
8	UniProt	VAR_032480	N	375	S	MET_HUMAN	Polymorphism	33917957	B	N	375	S
9	UniProt	VAR_064856	C	385	Y	MET_HUMAN	Polymorphism	752055485	B	C	385	Y

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (9, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_041738	R	143	Q	MET_HUMAN	Polymorphism	35469582	D	R	143	Q
2	UniProt	VAR_064855	H	150	Y	MET_HUMAN	Unclassified	---	D	H	150	Y
3	UniProt	VAR_041739	S	156	L	MET_HUMAN	Polymorphism	56311081	D	S	156	L
4	UniProt	VAR_041740	E	168	D	MET_HUMAN	Polymorphism	55985569	D	E	168	D
5	UniProt	VAR_032478	L	238	S	MET_HUMAN	Polymorphism	34349517	D	L	238	S
6	UniProt	VAR_032479	I	316	M	MET_HUMAN	Polymorphism	35225896	D	I	316	M
7	UniProt	VAR_006285	A	320	V	MET_HUMAN	Polymorphism	35776110	D	A	320	V
8	UniProt	VAR_032480	N	375	S	MET_HUMAN	Polymorphism	33917957	D	N	375	S
9	UniProt	VAR_064856	C	385	Y	MET_HUMAN	Polymorphism	752055485	D	C	385	Y

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LRR	PS51450	Leucine-rich repeat profile.	INLB_LISMO	99-120 121-142 143-164 165-186 187-208 209-230	12	A:99-120 C:99-120 A:121-142 C:121-142 A:143-164 C:143-164 A:165-186 C:165-186 A:187-208 C:187-208 A:209-230 C:209-230

Biological Unit 1 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LRR	PS51450	Leucine-rich repeat profile.	INLB_LISMO	99-120 121-142 143-164 165-186 187-208 209-230	6	A:99-120 - A:121-142 - A:143-164 - A:165-186 - A:187-208 - A:209-230 -

Biological Unit 2 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LRR	PS51450	Leucine-rich repeat profile.	INLB_LISMO	99-120 121-142 143-164 165-186 187-208 209-230	6	- C:99-120 - C:121-142 - C:143-164 - C:165-186 - C:187-208 - C:209-230

Asymmetric Unit (7, 14)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1c	ENST00000397752	1c	ENSE00001865305	chr7:116312446-116312631	186	MET_HUMAN	-	0	0	-	-
1.3c	ENST00000397752	3c	ENSE00001238915	chr7:116339125-116340338	1214	MET_HUMAN	1-400	400	2	B:42-393 (gaps) D:42-393 (gaps)	352 352
1.6	ENST00000397752	6	ENSE00000717722	chr7:116371722-116371913	192	MET_HUMAN	401-464	64	2	B:414-464 D:414-464	51 51
1.7	ENST00000397752	7	ENSE00000717724	chr7:116380004-116380138	135	MET_HUMAN	465-509	45	2	B:465-509 D:465-509	45 45
1.8	ENST00000397752	8	ENSE00000717726	chr7:116380906-116381079	174	MET_HUMAN	510-567	58	2	B:510-567 D:510-567	58 58
1.9b	ENST00000397752	9b	ENSE00000717728	chr7:116395409-116395569	161	MET_HUMAN	568-621	54	2	B:568-621 D:568-621	54 54
1.10	ENST00000397752	10	ENSE00000717730	chr7:116397491-116397593	103	MET_HUMAN	621-655	35	2	B:621-655 (gaps) D:621-655 (gaps)	35 35
1.11b	ENST00000397752	11b	ENSE00000717732	chr7:116397692-116397828	137	MET_HUMAN	656-701	46	2	B:656-658 D:656-658	3 3
1.12a	ENST00000397752	12a	ENSE00000717735	chr7:116398513-116398674	162	MET_HUMAN	701-755	55	0	-	-
1.13b	ENST00000397752	13b	ENSE00001530016	chr7:116399445-116399544	100	MET_HUMAN	755-788	34	0	-	-
1.14	ENST00000397752	14	ENSE00000717791	chr7:116403104-116403322	219	MET_HUMAN	789-861	73	0	-	-
1.15a	ENST00000397752	15a	ENSE00000717803	chr7:116409699-116409845	147	MET_HUMAN	862-910	49	0	-	-
1.16	ENST00000397752	16	ENSE00000717811	chr7:116411552-116411708	157	MET_HUMAN	911-963	53	0	-	-
1.17	ENST00000397752	17	ENSE00000717833	chr7:116411903-116412043	141	MET_HUMAN	963-1010	48	0	-	-
1.18b	ENST00000397752	18b	ENSE00000717861	chr7:116414935-116415165	231	MET_HUMAN	1010-1087	78	0	-	-
1.19	ENST00000397752	19	ENSE00000717879	chr7:116417443-116417523	81	MET_HUMAN	1087-1114	28	0	-	-
1.20	ENST00000397752	20	ENSE00000717895	chr7:116418830-116419011	182	MET_HUMAN	1114-1174	61	0	-	-
1.21	ENST00000397752	21	ENSE00000717902	chr7:116422042-116422151	110	MET_HUMAN	1175-1211	37	0	-	-
1.22	ENST00000397752	22	ENSE00000717928	chr7:116423358-116423523	166	MET_HUMAN	1211-1266	56	0	-	-
1.23	ENST00000397752	23	ENSE00000717937	chr7:116435709-116435845	137	MET_HUMAN	1267-1312	46	0	-	-
1.24b	ENST00000397752	24b	ENSE00000881894	chr7:116435941-116438440	2500	MET_HUMAN	1312-1390	79	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:287
 aligned with INLB_LISMO | P25147 from UniProtKB/Swiss-Prot  Length:630

    Alignment length:287
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       
           INLB_LISMO    34 QAETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 320
               SCOP domains d2uzxa1 A:34-240 automated matches                                                                                                                                                                             d2uzxa2 A:241-320 automated matches                                              SCOP domains
               CATH domains 2uzxA01 A:34-245 Ribonuclease Inhibitor                                                                                                                                                                             2uzxA02 A:246-320  [code=2.60.40.1220, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eehhhhh.hhhhhhhhhhhh.......eehhhhhhh..eee..........hhhhh....eee........hhhhh......eee.......hhhhhh......eee........hhhhhhh....eee........hhhhhh.....eee........hhhhh......eee........hhhhhhh....eee..........ee.....eee..............ee....eee..eee........eeeeeeeeeeee..eeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------LRR  PDB: A:99-120    LRR  PDB: A:121-142   LRR  PDB: A:143-164   LRR  PDB: A:165-186   LRR  PDB: A:187-208   LRR  PDB: A:209-230   ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2uzx A  34 AMETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 320
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313

Chain B from PDB  Type:PROTEIN  Length:547
 aligned with MET_HUMAN | P08581 from UniProtKB/Swiss-Prot  Length:1390

    Alignment length:617
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       
            MET_HUMAN    42 QLPNFTAETPIQNVILHEHHIFLGATNYIYVLNEEDLQKVAEYKTGPVLEHPDCFPCQDCSSKANLSGGVWKDNINMALVVDTYYDDQLISCGSVNRGTCQRHVFPHNHTADIQSEVHCIFSPQIEEPSQCPDCVVSALGAKVLSSVKDRFINFFVGNTINSSYFPDHPLHSISVRRLKETKDGFMFLTDQSYIDVLPEFRDSYPIKYVHAFESNNFIYFLTVQRETLDAQTFHTRIIRFCSINSGLHSYMEMPLECILTEKRKKRSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFGVFAQSKPDSAEPMDRSAMCAFPIKYVNDFFNKIVNKNNVRCLQHFYGPNHEHCFNRTLLRNSSGCEARRDEYRTEFTTALQRVDLFMGQFSEVLLTSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHVNFLLDSHPVSPEVIVEHTLNQNGYTLVITGKKITKIPLNGLGCRHFQSCSQCLSAPPFVQCGWCHDKCVRSEECLSGTWTQQICLPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSESTMNTLKCTVGPAMNKHFNMSIIISNGHGTTQYSTFSYVDPV 658
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2uzxB01 B:42-531 YVTN repeat-like/Quinoprotein ami                   ne dehydrogenase                                                                                                                                                                                                                                                                                                                                                                                                                     2uzxB02 B:532-658 Immunoglobulins                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....eeeeeee..eeeeee..eeeeee.....eeeee.......-------------------........eeeee.....eeeee.......eeeee.....-----.ee.....----..............eeeeeeee..eeeeeeee......----....eeeeee......ee..hhh.ee..hhhhh....eeeeeeeee..eeeeeeee...........eeeee..........eeeeeeeee.---------.....eeeeeeee..hhhhhhhhh......eeeeeeeee......eeeeeeeeeeehhhhhhhhh..----.ee.hhhhhh..--------------------....eee...eeee...........eeeeeeeee..eeeeeeee....eeeee.......................eeee.......eeeeee..eeeeee..........hhhhhhhhhhhh.eee....eee................eeeeee..........eeeeeee...eee..eee....eeee..ee.ee.hhhh...eeeee...-----...eeeee....eeeee........ Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------Q------Y-----L-----------D---------------------------------------------------------------------S-----------------------------------------------------------------------------M---V------------------------------------------------------S---------Y--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3c  PDB: B:42-393 (gaps) UniProt: 1-400 [INCOMPLETE]                                                                                                                                                                                                                                                                                                            Exon 1.6  PDB: B:414-464 UniProt: 401-464 [INCOMPLETE]          Exon 1.7  PDB: B:465-509 UniProt: 465-509    Exon 1.8  PDB: B:510-567 UniProt: 510-567                 -----------------------------------------------------Exon 1.10  PDB: B:621-655 (gaps)   1.1 Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9b  PDB: B:568-621 UniProt: 568-621            ------------------------------------- Transcript 1 (2)
                 2uzx B  42 QLPNFTAETPIQNVILHEHHIFLGATNYIYVLNEEDLQKVAEYKTGPVLE-------------------VWKDNINMALVVDTYYDDQLISCGSVNRGTCQRHVFPHNH-----SEVHCIFS----EPSQCPDCVVSALGAKVLSSVKDRFINFFVGNTINSSY----PLHSISVRRLKETKDGFMFLTDQSYIDVLPEFRDSYPIKYVHAFESNNFIYFLTVQRETLDAQTFHTRIIRFCSINSGLHSYMEMPLECILT---------KEVFNILQAAYVSKPGAQLARQIGASLNDDILFAVFAQSKPDSAEPMDRSAMCAFPIKYVNDFFNKI----NVRCLQHFYGPN--------------------DEYRTEFTTALQRVDLFMGQFSEVLLTSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHVNFLLDSHPVSPEVIVEHTLNQNGYTLVITGKKITKIPLNGLGCRHFQSCSQCLSAPPFVQCGWCHDKCVRSEECLSGTWTQQICLPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSESTMNTLKCTVGP-----FNMSIIISNGHGTTQYSTFSYVDPV 658
                                    51        61        71        81        91         -       111       121       131       141        |-    |  161 |    |171       181       191       201   |   211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371     |   -|      391 |       -         -  |    421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621      |  -  |    641       651       
                                                                            91                 111                                    150   156    163  168                                  205  210                                                                                        301       311                                                               377  382        393                  414                                                                                                                                                                                                                   628   634

Chain C from PDB  Type:PROTEIN  Length:287
 aligned with INLB_LISMO | P25147 from UniProtKB/Swiss-Prot  Length:630

    Alignment length:287
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       
           INLB_LISMO    34 QAETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 320
               SCOP domains d2uzxc1 C:34-240 automated matches                                                                                                                                                                             d2uzxc2 C:241-320 automated matches                                              SCOP domains
               CATH domains 2uzxC01 C:34-245 Ribonuclease Inhibitor                                                                                                                                                                             2uzxC02 C:246-320  [code=2.60.40.1220, no name defined]                     CATH domains
           Pfam domains (1) --Internalin_N-2uzxC07    --------------------------------------------------------------------------------------------------------LRR_4-2uzxC01 C:164-206                    LRR_6-2uzxC05 C:207-233    ------------------------------LRR_adjacent-2uzxC09 C:264-320                            Pfam domains (1)
           Pfam domains (2) --Internalin_N-2uzxC08    --------------------------------------------------------------------------------------------------------LRR_4-2uzxC02 C:164-206                    LRR_6-2uzxC06 C:207-233    ------------------------------LRR_adjacent-2uzxC10 C:264-320                            Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------LRR_4-2uzxC03 C:164-206                    ------------------------------------------------------------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------LRR_4-2uzxC04 C:164-206                    ------------------------------------------------------------------------------------------------------------------ Pfam domains (4)
         Sec.struct. author ........eehhhhh.hhhhhhhhhhhh.......eehhhhhhh..eee..........hhhhh....eee........hhhhh......eee.......hhhhhh......eee........hhhhhhh....eee........hhhhhh.....eee........hhhhh......eee........hhhhhhh....eee..........ee.....eee..............ee....eee..eee........eeeeeeeeeeee..eeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------LRR  PDB: C:99-120    LRR  PDB: C:121-142   LRR  PDB: C:143-164   LRR  PDB: C:165-186   LRR  PDB: C:187-208   LRR  PDB: C:209-230   ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2uzx C  34 AMETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 320
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313

Chain D from PDB  Type:PROTEIN  Length:547
 aligned with MET_HUMAN | P08581 from UniProtKB/Swiss-Prot  Length:1390

    Alignment length:617
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       
            MET_HUMAN    42 QLPNFTAETPIQNVILHEHHIFLGATNYIYVLNEEDLQKVAEYKTGPVLEHPDCFPCQDCSSKANLSGGVWKDNINMALVVDTYYDDQLISCGSVNRGTCQRHVFPHNHTADIQSEVHCIFSPQIEEPSQCPDCVVSALGAKVLSSVKDRFINFFVGNTINSSYFPDHPLHSISVRRLKETKDGFMFLTDQSYIDVLPEFRDSYPIKYVHAFESNNFIYFLTVQRETLDAQTFHTRIIRFCSINSGLHSYMEMPLECILTEKRKKRSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFGVFAQSKPDSAEPMDRSAMCAFPIKYVNDFFNKIVNKNNVRCLQHFYGPNHEHCFNRTLLRNSSGCEARRDEYRTEFTTALQRVDLFMGQFSEVLLTSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHVNFLLDSHPVSPEVIVEHTLNQNGYTLVITGKKITKIPLNGLGCRHFQSCSQCLSAPPFVQCGWCHDKCVRSEECLSGTWTQQICLPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSESTMNTLKCTVGPAMNKHFNMSIIISNGHGTTQYSTFSYVDPV 658
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2uzxD01 D:42-531 YVTN repeat-like/Quinoprotein ami                   ne dehydrogenase                                                                                                                                                                                                                                                                                                                                                                                                                     2uzxD02 D:532-658 Immunoglobulins                                                                                               CATH domains
           Pfam domains (1) ----------Sema-2uzxD05 D:52-500                                                                                                                                                                                                                                                                                                                                                                                                                                            ------------------PSI-2uzxD03 D:519-562                       TIG-2uzxD01 D:563-654                                                                       ---- Pfam domains (1)
           Pfam domains (2) ----------Sema-2uzxD06 D:52-500                                                                                                                                                                                                                                                                                                                                                                                                                                            ------------------PSI-2uzxD04 D:519-562                       TIG-2uzxD02 D:563-654                                                                       ---- Pfam domains (2)
         Sec.struct. author ...eee....eeeeeee..eeeeee..eeeeee.....eeeee.......-------------------........eeeee.....eeeee.......eeeee.....-----.ee.....----..............eeeeeeee..eeeeeeee......----....eeeeee......ee..hhh.ee..hhhhh....eeeeeeeee..eeeeeeee...........eeeee..........eeeeeeeee.---------.eee.eeeeeeee..hhhhhhhhh......eeeeeeeee......eeeeeeeeeeehhhhhhhhh..----.ee.hhhhhh..--------------------....eee...eeee...........eeeeeeeee..eeeeeeee....eeeee.......................eeee.......eeeeee..eeeeee..........hhhhhhhhhhhh.eee....eee................eeeeee..........eeeeeee...eee..eee....eeee..ee.ee.hhhh...eeeee...-----...eeeee....eeeee........ Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------Q------Y-----L-----------D---------------------------------------------------------------------S-----------------------------------------------------------------------------M---V------------------------------------------------------S---------Y--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3c  PDB: D:42-393 (gaps) UniProt: 1-400 [INCOMPLETE]                                                                                                                                                                                                                                                                                                            Exon 1.6  PDB: D:414-464 UniProt: 401-464 [INCOMPLETE]          Exon 1.7  PDB: D:465-509 UniProt: 465-509    Exon 1.8  PDB: D:510-567 UniProt: 510-567                 -----------------------------------------------------Exon 1.10  PDB: D:621-655 (gaps)   1.1 Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9b  PDB: D:568-621 UniProt: 568-621            ------------------------------------- Transcript 1 (2)
                 2uzx D  42 QLPNFTAETPIQNVILHEHHIFLGATNYIYVLNEEDLQKVAEYKTGPVLE-------------------VWKDNINMALVVDTYYDDQLISCGSVNRGTCQRHVFPHNH-----SEVHCIFS----EPSQCPDCVVSALGAKVLSSVKDRFINFFVGNTINSSY----PLHSISVRRLKETKDGFMFLTDQSYIDVLPEFRDSYPIKYVHAFESNNFIYFLTVQRETLDAQTFHTRIIRFCSINSGLHSYMEMPLECILT---------KEVFNILQAAYVSKPGAQLARQIGASLNDDILFAVFAQSKPDSAEPMDRSAMCAFPIKYVNDFFNKI----NVRCLQHFYGPN--------------------DEYRTEFTTALQRVDLFMGQFSEVLLTSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHVNFLLDSHPVSPEVIVEHTLNQNGYTLVITGKKITKIPLNGLGCRHFQSCSQCLSAPPFVQCGWCHDKCVRSEECLSGTWTQQICLPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSESTMNTLKCTVGP-----FNMSIIISNGHGTTQYSTFSYVDPV 658
                                    51        61        71        81        91         -       111       121       131       141        |-    |  161 |    |171       181       191       201   |   211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371     |   -|      391 |       -         -  |    421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621      |  -  |    641       651       
                                                                            91                 111                                    150   156    163  168                                  205  210                                                                                        301       311                                                               377  382        393                  414                                                                                                                                                                                                                   628   634

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: E-set (290)

Family: TIG (28)

Homo sapiens (Human) (12)

1a	TIG-2uzxD01	D:563-654
1b	TIG-2uzxD02	D:563-654

Clan: LRR (77)

Family: LRR_4 (28)

Listeria monocytogenes (18)

2a	LRR_4-2uzxC01	C:164-206
2b	LRR_4-2uzxC02	C:164-206
2c	LRR_4-2uzxC03	C:164-206
2d	LRR_4-2uzxC04	C:164-206

Family: LRR_6 (24)

Listeria monocytogenes (10)

3a	LRR_6-2uzxC05	C:207-233
3b	LRR_6-2uzxC06	C:207-233

Clan: no clan defined [family: Internalin_N] (18)

Family: Internalin_N (18)

Listeria monocytogenes (18)

4a	Internalin_N-2uzxC07	C:36-59
4b	Internalin_N-2uzxC08	C:36-59

Clan: no clan defined [family: LRR_adjacent] (15)

Family: LRR_adjacent (15)

Listeria monocytogenes (15)

5a	LRR_adjacent-2uzxC09	C:264-320
5b	LRR_adjacent-2uzxC10	C:264-320

Clan: no clan defined [family: PSI] (9)

Family: PSI (9)

Homo sapiens (Human) (6)

6a	PSI-2uzxD03	D:519-562
6b	PSI-2uzxD04	D:519-562

Clan: no clan defined [family: Sema] (8)

Family: Sema (8)

Homo sapiens (Human) (4)

7a	Sema-2uzxD05	D:52-500
7b	Sema-2uzxD06	D:52-500

Asymmetric Unit(hide GO term definitions)

Chain A,C (INLB_LISMO | P25147)

molecular function
	GO:0005515		protein binding		Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Chain B,D (MET_HUMAN | P08581)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0005008	hepatocyte growth factor-activated receptor activity	Combining with hepatocyte growth factor and transmitting the signal across the plasma membrane to initiate a change in cell activity.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0019903	protein phosphatase binding	Interacting selectively and non-covalently with any protein phosphatase.
	GO:0004713	protein tyrosine kinase activity	Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0004714	transmembrane receptor protein tyrosine kinase activity	Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate.
biological process
	GO:0048754	branching morphogenesis of an epithelial tube	The process in which the anatomical structures of branches in an epithelial tube are generated and organized. A tube is a long hollow cylinder.
	GO:0008283	cell proliferation	The multiplication or reproduction of cells, resulting in the expansion of a cell population.
	GO:0007166	cell surface receptor signaling pathway	A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
	GO:0001886	endothelial cell morphogenesis	The change in form (cell shape and size) that occurs during the differentiation of an endothelial cell.
	GO:0048012	hepatocyte growth factor receptor signaling pathway	The series of molecular signals generated as a consequence of the hepatocyte growth factor receptor binding to one of its physiological ligands.
	GO:0010507	negative regulation of autophagy	Any process that stops, prevents, or reduces the frequency, rate or extent of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm.
	GO:1901299	negative regulation of hydrogen peroxide-mediated programmed cell death	Any process that stops, prevents or reduces the frequency, rate or extent of hydrogen peroxide-mediated programmed cell death.
	GO:0018108	peptidyl-tyrosine phosphorylation	The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0050918	positive chemotaxis	The directed movement of a motile cell or organism towards a higher concentration of a chemical.
	GO:2001028	positive regulation of endothelial cell chemotaxis	Any process that activates or increases the frequency, rate or extent of endothelial cell chemotaxis.
	GO:0045944	positive regulation of transcription from RNA polymerase II promoter	Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
	GO:0071526	semaphorin-plexin signaling pathway	A series of molecular signals generated as a consequence of a semaphorin receptor (composed of a plexin and a neurophilin) binding to a semaphorin ligand.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
	GO:0009925	basal plasma membrane	The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2uzx)

	Sites
(no "Sites" information available for 2uzx)

	Cis Peptide Bonds
		Lys A:280 - Pro A:281	[ RasMol ]
		Lys C:280 - Pro C:281	[ RasMol ]
		Phe B:569 - Pro B:570	[ RasMol ]
		Phe D:569 - Pro D:570	[ RasMol ]

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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	2uzx
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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	INLB_LISMO \| P25147
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	MET_HUMAN \| P08581
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		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
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		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	MET_HUMAN \| P08581
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

1d0b	INTERNALIN B LEUCINE RICH REPEAT DOMAIN
1fyr	DIMER FORMATION THROUGH DOMAIN SWAPPING IN THE CRYSTALSTRUCTURE OF THE GRB2-SH2 AC- PYVNV COMPLEX
1h6t	INTERNALIN B: CRYSTAL STRUCTURE OF FUSED N- TERMINAL DOMAINS.
1m9s	CRYSTAL STRUCTURE OF INTERNALIN B (INLB), A LISTERIAMONOCYTOGENES VIRULENCE PROTEIN CONTAINING SH3-LIKEDOMAINS.
1otm	CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN
1otn	CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN
1oto	CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN
1r0p	CRYSTAL STRUCTURE OF THE TYROSINE KINASE DOMAIN OF THEHEPATOCYTE GROWTH FACTOR RECEPTOR C-MET IN COMPLEX WITHTHE MICROBIAL ALKALOID K-252A
1r1w	CRYSTAL STRUCTURE OF THE TYROSINE KINASE DOMAIN OF THEHEPATOCYTE GROWTH FACTOR RECEPTOR C-MET
1shy	THE CRYSTAL STRUCTURE OF HGF BETA-CHAIN IN COMPLEX WITH THESEMA DOMAIN OF THE MET RECEPTOR.
1ssl	SOLUTION STRUCTURE OF THE PSI DOMAIN FROM THE MET RECEPTOR
1ux3	3D STRUCTURE PREDICTION OF AMINO ACIDS 25 TO 656 OF HUMAN HEPATOCYTE GROWTH FACTOR/ SCATTER FACTOR (MET) RECEPTOR
2cew	3D STRUCTURE PREDICTION OF THE IG2-IG4 DOMAINS OF THE ECTODOMAIN REGION OF THE HUMAN HEPATOCYTE GROWTH FACTOR-SCATTER FACTOR RECEPTOR, MET
2g15	STRUCTURAL CHARACTERIZATION OF AUTOINHIBITED C- MET KINASE
2uzy	STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: LOW RESOLUTION, CRYSTAL FORM II

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (16, 16)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (9, 18)

PROSITE Motifs (1, 12)

Exons (7, 14)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (4, 8)

Pfam Domains (7, 16)

Gene Ontology (33, 34)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File