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(-) Description

Title :  CRYSTAL STRUCTURE OF C-MET IN COMPLEX WITH LY2801653
 
Authors :  Y. Wang, S. L. Stout
Date :  28 Mar 12  (Deposition) - 10 Apr 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Tyrosine Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. B. Yan, V. L. Peek, R. Ajamie, S. G. Buchanan, J. R. Graff, S. A. Heidler, Y. H. Hui, K. L. Huss, B. W. Konicek, J. R. Manro, C. Shih, J. A. Stewart, T. R. Stewart, S. L. Stout, M. T. Uhlik, S. L. Um, Y. Wang, W. Wu, L. Yan, W. J. Yang, B. Zhong, R. A. Walgren
Ly2801653 Is An Orally Bioavailable Multi-Kinase Inhibitor With Potent Activity Against Met, Mst1R, And Other Oncoproteins, And Displays Anti-Tumor Activities In Mouse Xenograft Models.
Invest New Drugs V. 31 833 2013
PubMed-ID: 23275061  |  Reference-DOI: 10.1007/S10637-012-9912-9

(-) Compounds

Molecule 1 - HEPATOCYTE GROWTH FACTOR RECEPTOR
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE DOMAIN (UNP RESIDUES 1038-1346)
    Gene: MET
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HGF RECEPTOR, HGF/SF RECEPTOR, PROTO-ONCOGENE C-MET, SCATTER FACTOR RECEPTOR, SF RECEPTOR, TYROSINE-PROTEIN KINASE MET

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1L1X1Ligand/IonN-(3-FLUORO-4-{[1-METHYL-6-(1H-PYRAZOL-4-YL)-1H-INDAZOL-5-YL]OXY}PHENYL)-1-(4-FLUOROPHENYL)-6-METHYL-2-OXO-1,2-DIHYDROPYRIDINE-3-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:1084 , VAL A:1092 , ALA A:1108 , LYS A:1110 , GLU A:1127 , ILE A:1130 , MET A:1131 , LEU A:1157 , PRO A:1158 , TYR A:1159 , MET A:1160 , LEU A:1195 , VAL A:1220 , ALA A:1221 , ASP A:1222 , PHE A:1223 , HOH A:1618BINDING SITE FOR RESIDUE L1X A 1401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EEV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EEV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EEV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EEV)

(-) Exons   (0, 0)

(no "Exon" information available for 4EEV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:283
                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4eeva_ A: Hepatocyte growth factor receptor, c-MET                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh..hhhhhhhhhhhhhhhh..hhh.eeeeeeeeeee...eeeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhhhh..........eee.......eeeee.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh............hhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4eev A 1045 PLLQNTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 1346
                                  1054      1064      1074      1084      1094      1104      1114      1124      1134      1144      1154      1164      1174      1184      1194      1204      1214      1224|     1253      1263      1273      1283      1293      1303      1313      1323      1333      1343   
                                                                                                                                                                                                            1224|                                                                                                      
                                                                                                                                                                                                             1244
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EEV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EEV)

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        MET_HUMAN | P08581: 1fyr 1r0p 1r1w 1shy 1ssl 1ux3 2cew 2g15 2rfn 2rfs 2uzx 2uzy 2wd1 2wgj 2wkm 3a4p 3bux 3c1x 3ccn 3cd8 3ce3 3cth 3ctj 3dkc 3dkf 3dkg 3efj 3efk 3f66 3f82 3i5n 3l8v 3lq8 3q6u 3q6w 3qti 3r7o 3rhk 3u6h 3u6i 3vw8 3zbx 3zc5 3zcl 3zxz 3zze 4aoi 4ap7 4deg 4deh 4dei 4gg5 4gg7 4iwd 4k3j 4knb 4mxc 4o3t 4o3u 4r1v 4r1y 4xmo 4xyf 5dg5 5eob 5eyc 5eyd 5hlw 5hni 5ho6 5hoa 5hor 5hti 5t3q 5uab 5uad 5uaf

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