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(-) Description

Title :  INTERNALIN B LEUCINE RICH REPEAT DOMAIN
 
Authors :  M. Marino, L. Braun, P. Cossart, P. Ghosh
Date :  09 Sep 99  (Deposition) - 07 Jan 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A
Keywords :  Leucine Rich Repeat, Calcium Binding, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Marino, L. Braun, P. Cossart, P. Ghosh
Structure Of The Lnlb Leucine-Rich Repeats, A Domain That Triggers Host Cell Invasion By The Bacterial Pathogen L. Monocytogenes.
Mol. Cell V. 4 1063 1999
PubMed-ID: 10635330  |  Reference-DOI: 10.1016/S1097-2765(00)80234-8
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - INTERNALIN B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: LRR DOMAIN, RESIDUES 36-248
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 1639

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:49 , ASP A:51 , HOH A:263 , HOH A:264 , HOH A:265 , HOH A:266 , HOH A:267BINDING SITE FOR RESIDUE CA A 249
2AC2SOFTWAREGLU A:55 , ASP A:59 , HOH A:268 , HOH A:269 , HOH A:397BINDING SITE FOR RESIDUE CA A 250

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1D0B)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1D0B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1D0B)

(-) PROSITE Motifs  (1, 6)

Asymmetric/Biological Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.INLB_LISMO99-120
121-142
143-164
165-186
187-208
209-230		  6A:99-120
A:121-142
A:143-164
A:165-186
A:187-208
A:209-230

(-) Exons   (0, 0)

(no "Exon" information available for 1D0B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:207
 aligned with INLB_LISMO | P25147 from UniProtKB/Swiss-Prot  Length:630

    Alignment length:207
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       
           INLB_LISMO    36 ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 242
               SCOP domains d1d0ba_ A: Internalin B                                                                                                                                                                                         SCOP domains
               CATH domains 1d0bA00 A:36-242 Ribonuclease Inhibitor                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eehhhhh.hhhhhhhhhhhh.......eehhhhhhh..eee..........hhhhh....eee........hhhhh......eee........hhhhh......eee........hhhhhhh....eee........hhhhhhh....eee........hhhhh......eee........hhhhh......eee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------LRR  PDB: A:99-120    LRR  PDB: A:121-142   LRR  PDB: A:143-164   LRR  PDB: A:165-186   LRR  PDB: A:187-208   LRR  PDB: A:209-230   ------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d0b A  36 ETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 242
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1D0B)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (INLB_LISMO | P25147)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        INLB_LISMO | P25147: 1h6t 1m9s 1otm 1otn 1oto 2uzx 2uzy 2wqu 2wqv 2wqw 2wqx 2y5p 2y5q 4aw4 4cil

(-) Related Entries Specified in the PDB File

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