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(-)Asym./Biol. Unit
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(-) Description

Title :  YOPM-INLB: HYBRID LEUCINE-RICH REPEAT PROTEIN
 
Authors :  D. Breitsprecher, H. H. Niemann
Date :  11 Dec 13  (Deposition) - 02 Apr 14  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Signaling Protein, Capping, Fusion Protein, Lrr, Protein Chimera, Protein Design, Protein Engineering (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Breitsprecher, E. Gherardi, W. M. Bleymuller, H. H. Niemann
Crystal Structure Of An Engineered Yopm-Inlb Hybrid Protein
Bmc Struct. Biol. V. 14 12 2014
PubMed-ID: 24669959  |  Reference-DOI: 10.1186/1472-6807-14-12

(-) Compounds

Molecule 1 - YOPM-CAP, INTERNALIN B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: CODONPLUS
    Expression System Vector: PETM30
    Expression System Vector Type: PLASMID
    Fragment: YOPM N-TERMINAL CAP RESIDUES 34-87, INLB LEUCINE-RICH REPEAT AND INTER-REPEAT REGION RESIDUES 93-321
    Organism Scientific: YERSINIA ENTEROCOLITICA, LISTERIA MONOCYTOGENES
    Organism Taxid: 630, 169963
    Other Details: PLASMID PYVE227
    Strain: W22703, EGD-E

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4CIL)

(-) Sites  (0, 0)

(no "Site" information available for 4CIL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CIL)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:280 -Pro A:281

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CIL)

(-) PROSITE Motifs  (1, 6)

Asymmetric/Biological Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.INLB_LISMO99-120
121-142
143-164
165-186
187-208
209-230		  6A:99-120
A:121-142
A:143-164
A:165-186
A:187-208
A:209-230

(-) Exons   (0, 0)

(no "Exon" information available for 4CIL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:279
 aligned with INLB_LISMO | P25147 from UniProtKB/Swiss-Prot  Length:630

    Alignment length:321
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
           INLB_LISMO     1 MKEKHNPRRKYCLISGLAIIFSLWIIIGNGAKVQAETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKE 321
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh-------------hhhhhhh....--..hhhhhhhh--------------hhhhhhh-----...eee..--------.................eee........hhhhh......eee........hhhhh......eee........hhhhhhh....eee........hhhhhhh....eee........hhhhh......eee........hhhhh......eeeeeeeeee...ee...eeeee..............ee....eee..eeeee......eeeeeeeeeeee..eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------LRR  PDB: A:99-120    LRR  PDB: A:121-142   LRR  PDB: A:143-164   LRR  PDB: A:165-186   LRR  PDB: A:187-208   LRR  PDB: A:209-230   ------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cil A  36 KAEYYN-------------AWSEWERNAPP--GEQRGMAVSR--------------LRDCLDR-----QAHELELN--------NLGLSSLPGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKE 321
                                 |   -        42        52  |     62 |       -      | 68  |     73     |   -    |   85 ||    100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
                                41            42        52 55       64             65    71    72     79       80     87|                                                                                                                                                                                                                                    
                                                                                                                       93
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CIL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CIL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CIL)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (INLB_LISMO | P25147)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

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  Cis Peptide Bonds
    Lys A:280 - Pro A:281   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        INLB_LISMO | P25147: 1d0b 1h6t 1m9s 1otm 1otn 1oto 2uzx 2uzy 2wqu 2wqv 2wqw 2wqx 2y5p 2y5q 4aw4

(-) Related Entries Specified in the PDB File

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