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2UZX
Biol. Unit 2
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Asym.Unit (273 KB)
Biol.Unit 1 (137 KB)
Biol.Unit 2 (138 KB)
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(1)
Title
:
STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: CRYSTAL FORM I
Authors
:
H. H. Niemann, V. Jager, P. J. G. Butler, J. Van Den Heuvel, S. Schmidt, D. Ferraris, E. Gherardi, D. W. Heinz
Date
:
02 May 07 (Deposition) - 07 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Signaling Protein/Receptor, Leucine Rich Repeat, Receptor Ectodomain, Hepatocyte Growth Factor Receptor, Signaling Protein, Atp-Binding, Transferase, Polymorphism, Glycoprotein, Virulence Factor, Disease Mutation, Nucleotide-Binding, Transmembrane, Proto-Oncogene, Phosphorylation, Leucine-Rich Repeat, Alternative Splicing, Tyrosine-Protein Kinase, Chromosomal Rearrangement, Lrr, Hgfr, Kinase, Membrane, Receptor, Internalin, Signaling Protein/Receptor Complex
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Reference
:
H. H. Niemann, V. Jager, P. J. G. Butler, J. Van Den Heuvel, S. Schmidt, D. Ferraris, E. Gherardi, D. W. Heinz
Structure Of The Human Receptor Tyrosine Kinase Met In Complex With The Listeria Invasion Protein Inlb
Cell(Cambridge, Mass. ) V. 130 235 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_041738 (R143Q, chain D, )
2: VAR_064855 (H150Y, chain D, )
3: VAR_041739 (S156L, chain D, )
4: VAR_041740 (E168D, chain D, )
5: VAR_032478 (L238S, chain D, )
6: VAR_032479 (I316M, chain D, )
7: VAR_006285 (A320V, chain D, )
8: VAR_032480 (N375S, chain D, )
9: VAR_064856 (C385Y, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041738
R
143
Q
MET_HUMAN
Polymorphism
35469582
D
R
143
Q
2
UniProt
VAR_064855
H
150
Y
MET_HUMAN
Unclassified
---
D
H
150
Y
3
UniProt
VAR_041739
S
156
L
MET_HUMAN
Polymorphism
56311081
D
S
156
L
4
UniProt
VAR_041740
E
168
D
MET_HUMAN
Polymorphism
55985569
D
E
168
D
5
UniProt
VAR_032478
L
238
S
MET_HUMAN
Polymorphism
34349517
D
L
238
S
6
UniProt
VAR_032479
I
316
M
MET_HUMAN
Polymorphism
35225896
D
I
316
M
7
UniProt
VAR_006285
A
320
V
MET_HUMAN
Polymorphism
35776110
D
A
320
V
8
UniProt
VAR_032480
N
375
S
MET_HUMAN
Polymorphism
33917957
D
N
375
S
9
UniProt
VAR_064856
C
385
Y
MET_HUMAN
Unclassified
---
D
C
385
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: LRR (C:209-230)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
INLB_LISMO
99-120
121-142
143-164
165-186
187-208
209-230
6
-
C:99-120
-
C:121-142
-
C:143-164
-
C:165-186
-
C:187-208
-
C:209-230
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2uzxa2 (A:241-320)
1b: SCOP_d2uzxc2 (C:241-320)
2a: SCOP_d2uzxa1 (A:34-240)
2b: SCOP_d2uzxc1 (C:34-240)
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)
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)
Superfamilies
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(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
automated matches
(93)
Protein domain
:
automated matches
(93)
Listeria monocytogenes [TaxId: 169963]
(7)
1a
d2uzxa2
A:241-320
1b
d2uzxc2
C:241-320
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
Internalin LRR domain
(22)
Protein domain
:
automated matches
(5)
Listeria monocytogenes [TaxId: 169963]
(5)
2a
d2uzxa1
A:34-240
2b
d2uzxc1
C:34-240
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_2uzxA01 (A:34-245)
1b: CATH_2uzxC01 (C:34-245)
2a: CATH_2uzxB01 (B:42-531)
2b: CATH_2uzxD01 (D:42-531)
3a: CATH_2uzxA02 (A:246-320)
3b: CATH_2uzxC02 (C:246-320)
4a: CATH_2uzxB02 (B:532-658)
4b: CATH_2uzxD02 (D:532-658)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(2)
1a
2uzxA01
A:34-245
1b
2uzxC01
C:34-245
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(2)
2a
2uzxB01
B:42-531
2b
2uzxD01
D:42-531
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1220, no name defined]
(28)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(2)
3a
2uzxA02
A:246-320
3b
2uzxC02
C:246-320
Homologous Superfamily
:
Immunoglobulins
(2282)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(2)
4a
2uzxB02
B:532-658
4b
2uzxD02
D:532-658
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Pfam Domains
(7, 16)
Info
all PFAM domains
1a: PFAM_TIG_2uzxD01 (D:563-654)
1b: PFAM_TIG_2uzxD02 (D:563-654)
2a: PFAM_LRR_4_2uzxC01 (C:164-206)
2b: PFAM_LRR_4_2uzxC02 (C:164-206)
2c: PFAM_LRR_4_2uzxC03 (C:164-206)
2d: PFAM_LRR_4_2uzxC04 (C:164-206)
3a: PFAM_LRR_6_2uzxC05 (C:207-233)
3b: PFAM_LRR_6_2uzxC06 (C:207-233)
4a: PFAM_Internalin_N_2uzxC07 (C:36-59)
4b: PFAM_Internalin_N_2uzxC08 (C:36-59)
5a: PFAM_LRR_adjacent_2uzxC09 (C:264-320)
5b: PFAM_LRR_adjacent_2uzxC10 (C:264-320)
6a: PFAM_PSI_2uzxD03 (D:519-562)
6b: PFAM_PSI_2uzxD04 (D:519-562)
7a: PFAM_Sema_2uzxD05 (D:52-500)
7b: PFAM_Sema_2uzxD06 (D:52-500)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
TIG
(28)
Homo sapiens (Human)
(12)
1a
TIG-2uzxD01
D:563-654
1b
TIG-2uzxD02
D:563-654
Clan
:
LRR
(77)
Family
:
LRR_4
(28)
Listeria monocytogenes
(18)
2a
LRR_4-2uzxC01
C:164-206
2b
LRR_4-2uzxC02
C:164-206
2c
LRR_4-2uzxC03
C:164-206
2d
LRR_4-2uzxC04
C:164-206
Family
:
LRR_6
(24)
Listeria monocytogenes
(10)
3a
LRR_6-2uzxC05
C:207-233
3b
LRR_6-2uzxC06
C:207-233
Clan
:
no clan defined [family: Internalin_N]
(18)
Family
:
Internalin_N
(18)
Listeria monocytogenes
(18)
4a
Internalin_N-2uzxC07
C:36-59
4b
Internalin_N-2uzxC08
C:36-59
Clan
:
no clan defined [family: LRR_adjacent]
(15)
Family
:
LRR_adjacent
(15)
Listeria monocytogenes
(15)
5a
LRR_adjacent-2uzxC09
C:264-320
5b
LRR_adjacent-2uzxC10
C:264-320
Clan
:
no clan defined [family: PSI]
(9)
Family
:
PSI
(9)
Homo sapiens (Human)
(6)
6a
PSI-2uzxD03
D:519-562
6b
PSI-2uzxD04
D:519-562
Clan
:
no clan defined [family: Sema]
(8)
Family
:
Sema
(8)
Homo sapiens (Human)
(4)
7a
Sema-2uzxD05
D:52-500
7b
Sema-2uzxD06
D:52-500
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