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(-) Description

Title :  STRUCTURE OF DUALLY PHOSPHORYLATED C-MET RECEPTOR KINASE IN COMPLEX WITH AN MK-8033 ANALOG
 
Authors :  S. M. Soisson, A. Northrup, K. Rickert, S. Patel, T. Allison
Date :  23 Jan 13  (Deposition) - 11 Dec 13  (Release) - 11 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Kinase, Tyrosine Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. B. Northrup, M. H. Katcher, M. D. Altman, M. Chenard, M. H. Daniels, S. V. Deshmukh, D. Falcone, D. J. Guerin, H. Hatch, C. Li, W. Lu, B. Lutterbach, T. J. Allison, S. B. Patel, J. F. Reilly, M. Reutershan, K. W. Rickert, C. Rosenstein, S. M. Soisson, A. A. Szewczak, D. Walker, K. Wilson, J. R. Young, B. S. Pan, C. J. Dinsmore
Discovery Of 1-[3-(1-Methyl-1H-Pyrazol-4-Yl)-5-Oxo-5H-Benzo[4, 5]Cyclohepta[1, 2-B]Pyridin-7-Yl]-N-(Pyridin-2-Ylmethyl) Methanesulfonamide (Mk-8033): A Specific C-Met/Ron Dual Kinase Inhibitor With Preferential Affinity For The Activated State Of C-Met.
J. Med. Chem. V. 56 2294 2013
PubMed-ID: 23379595  |  Reference-DOI: 10.1021/JM301619U

(-) Compounds

Molecule 1 - HEPATOCYTE GROWTH FACTOR RECEPTOR
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Fragment: UNP RESIDUES 1048-1348
    Gene: MET
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HGF RECEPTOR, HGF/SF RECEPTOR, PROTO-ONCOGENE C-MET, SCATTER FACTOR RECEPTOR, SF RECEPTOR, TYROSINE-PROTEIN KINASE MET

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
11JC1Ligand/Ion1-{5-OXO-3-[1-(PIPERIDIN-4-YL)-1H-PYRAZOL-4-YL]-5H-BENZO[4,5]CYCLOHEPTA[1,2-B]PYRIDIN-7-YL}-N-(PYRIDIN-2-YLMETHYL)METHANESULFONAMIDE
2AME1Mod. Amino AcidN-ACETYLMETHIONINE
3PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:1084 , GLY A:1085 , ARG A:1086 , GLY A:1087 , HIS A:1088 , VAL A:1092 , ALA A:1108 , PRO A:1158 , TYR A:1159 , MET A:1160 , LYS A:1161 , GLY A:1163 , ARG A:1208 , ASN A:1209 , MET A:1211 , ALA A:1221 , ASP A:1222 , GLN A:1304 , HOH A:1510 , HOH A:1528 , HOH A:1560 , HOH A:1585BINDING SITE FOR RESIDUE 1JC A 1401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IWD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IWD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IWD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IWD)

(-) Exons   (0, 0)

(no "Exon" information available for 4IWD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4iwda_ A: Hepatocyte growth factor receptor, c-MET                                                                                                                                                                                                                                                            SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..hhhhhhhhhhhhhhhh..hhh.eeeeeeeeeee....eeeeeeee.....eeeeeeee.....hhhhhhhhhhhhhh.............eee.......eeeee....eehhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......ee.....hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4iwd A 1047 xQNTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEyySVHNKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHHHHH 1352
                            |     1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236  ||  1250      1260      1270      1280      1290      1300      1310      1320      1330      1340      1350  
                            |                                                                                                                                                                                       1234-PTR||                                                                                                            
                         1047-AME                                                                                                                                                                                    1235-PTR|                                                                                                            
                                                                                                                                                                                                                         1239|                                                                                                            
                                                                                                                                                                                                                          1244
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IWD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IWD)

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MET_HUMAN | P08581: 1fyr 1r0p 1r1w 1shy 1ssl 1ux3 2cew 2g15 2rfn 2rfs 2uzx 2uzy 2wd1 2wgj 2wkm 3a4p 3bux 3c1x 3ccn 3cd8 3ce3 3cth 3ctj 3dkc 3dkf 3dkg 3efj 3efk 3f66 3f82 3i5n 3l8v 3lq8 3q6u 3q6w 3qti 3r7o 3rhk 3u6h 3u6i 3vw8 3zbx 3zc5 3zcl 3zxz 3zze 4aoi 4ap7 4deg 4deh 4dei 4eev 4gg5 4gg7 4k3j 4knb 4mxc 4o3t 4o3u 4r1v 4r1y 4xmo 4xyf 5dg5 5eob 5eyc 5eyd 5hlw 5hni 5ho6 5hoa 5hor 5hti 5t3q 5uab 5uad 5uaf

(-) Related Entries Specified in the PDB File

3r7o STRUCTURE OF DUALLY PHOSPHORYLATED C-MET RECEPTOR KINASE IN COMPLEX WITH AN MK-2461 ANALOG