2WQU - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   INTERNALIN DOMAIN OF LISTERIA MONOCYTOGENES INLB: TRICLINIC CRYSTAL FORM

Authors :   H. H. Niemann, D. W. Heinz

Date :   27 Aug 09 (Deposition) - 10 Nov 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)

Keywords :   Hgf Receptor Ligand, Leucine Rich Repeat, Lrr, C-Met Ligand, Cell Invasion, Virulence Factor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. M. Ferraris, E. Gherardi, Y. Di, D. W. Heinz, H. H. Niemann
Ligand-Mediated Dimerization Of The Met Receptor Tyrosine Kinase By The Bacterial Invasion Protein Inlb.
J. Mol. Biol. V. 395 522 2010
PubMed-ID: 19900460 | Reference-DOI: 10.1016/J.JMB.2009.10.074

Molecule 1 - INTERNALIN B
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PETM30
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	CODONPLUS
	Expression System Vector Type	:	PLASMID
	Fragment	:	INTERNALIN DOMAIN, RESIDUES 36-321
	Organism Scientific	:	LISTERIA MONOCYTOGENES
	Organism Taxid	:	169963
	Strain	:	EGD-E

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 20)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	SO4	17	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 5 (1, 5)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 6 (1, 6)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ILE A:271 , SER A:273 , SER A:295 , ARG A:314	BINDING SITE FOR RESIDUE SO4 A1322
02	AC2	SOFTWARE	ASN A:292 , GLU A:293 , LEU A:319 , ILE F:82	BINDING SITE FOR RESIDUE GOL A1324
03	AC3	SOFTWARE	SER A:192 , GLU A:194 , TYR A:214	BINDING SITE FOR RESIDUE GOL A1325
04	AC4	SOFTWARE	TYR A:299 , ARG A:310 , ILE C:47 , GLN C:92 , TYR C:96	BINDING SITE FOR RESIDUE GOL A1326
05	AC5	SOFTWARE	LEU B:235 , GLU B:236 , LYS B:308 , ALA B:309 , ARG B:310 , LYS C:89	BINDING SITE FOR RESIDUE SO4 B1321
06	AC6	SOFTWARE	LYS B:142 , HIS B:162	BINDING SITE FOR RESIDUE SO4 B1322
07	AC7	SOFTWARE	LYS B:139 , LYS C:142 , HIS C:162	BINDING SITE FOR RESIDUE SO4 B1323
08	AC8	SOFTWARE	HIS B:151	BINDING SITE FOR RESIDUE SO4 B1324
09	AC9	SOFTWARE	LEU C:235 , GLU C:236 , LEU C:237 , LYS C:308 , ALA C:309 , ARG C:310	BINDING SITE FOR RESIDUE SO4 C1319
10	BC1	SOFTWARE	LYS D:131 , LYS E:133 , SER E:155 , ASP E:156	BINDING SITE FOR RESIDUE SO4 E 322
11	BC2	SOFTWARE	LYS E:142 , HIS E:162	BINDING SITE FOR RESIDUE SO4 E 323
12	BC3	SOFTWARE	ASN A:73 , LYS D:133 , SER D:155 , LYS E:131	BINDING SITE FOR RESIDUE SO4 E1321
13	BC4	SOFTWARE	SER E:265 , LEU E:266 , LYS E:280	BINDING SITE FOR RESIDUE SO4 E1322
14	BC5	SOFTWARE	PRO A:41 , LYS E:89	BINDING SITE FOR RESIDUE SO4 E1323
15	BC6	SOFTWARE	SER F:155	BINDING SITE FOR RESIDUE SO4 F1321
16	BC7	SOFTWARE	SER F:265 , LEU F:266 , LYS F:280	BINDING SITE FOR RESIDUE SO4 F1322
17	BC8	SOFTWARE	HIS F:249 , GLN F:250 , SER F:251	BINDING SITE FOR RESIDUE SO4 F1323
18	BC9	SOFTWARE	HIS A:162 , LYS F:230 , SO4 F:1325	BINDING SITE FOR RESIDUE SO4 F1324
19	CC1	SOFTWARE	LYS B:280 , LYS F:209 , LYS F:230 , ASN F:231 , SO4 F:1324	BINDING SITE FOR RESIDUE SO4 F1325
20	CC2	SOFTWARE	LYS D:89 , LYS F:280	BINDING SITE FOR RESIDUE SO4 F1326

(no "SS Bond" information available for 2WQU)

Asymmetric Unit

No.	Residues
1	Lys A:280	-	Pro A:281
2	Lys B:280	-	Pro B:281
3	Lys C:280	-	Pro C:281
4	Lys D:280	-	Pro D:281
5	Lys E:280	-	Pro E:281
6	Lys F:280	-	Pro F:281

(no "SAP(SNP)/Variant" information available for 2WQU)

Asymmetric Unit (1, 36)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LRR	PS51450	Leucine-rich repeat profile.	INLB_LISMO	99-120 121-142 143-164 165-186 187-208 209-230	36	A:99-120 B:99-120 C:99-120 D:99-120 E:99-120 F:99-120 A:121-142 B:121-142 C:121-142 D:121-142 E:121-142 F:121-142 A:143-164 B:143-164 C:143-164 D:143-164 E:143-164 F:143-164 A:165-186 B:165-186 C:165-186 D:165-186 E:165-186 F:165-186 A:187-208 B:187-208 C:187-208 D:187-208 E:187-208 F:187-208 A:209-230 B:209-230 C:209-230 D:209-230 E:209-230 F:209-230

Biological Unit 1 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LRR	PS51450	Leucine-rich repeat profile.	INLB_LISMO	99-120 121-142 143-164 165-186 187-208 209-230	6	A:99-120 - - - - - A:121-142 - - - - - A:143-164 - - - - - A:165-186 - - - - - A:187-208 - - - - - A:209-230 - - - - -

Biological Unit 2 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LRR	PS51450	Leucine-rich repeat profile.	INLB_LISMO	99-120 121-142 143-164 165-186 187-208 209-230	6	- B:99-120 - - - - - B:121-142 - - - - - B:143-164 - - - - - B:165-186 - - - - - B:187-208 - - - - - B:209-230 - - - -

Biological Unit 3 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LRR	PS51450	Leucine-rich repeat profile.	INLB_LISMO	99-120 121-142 143-164 165-186 187-208 209-230	6	- - C:99-120 - - - - - C:121-142 - - - - - C:143-164 - - - - - C:165-186 - - - - - C:187-208 - - - - - C:209-230 - - -

Biological Unit 4 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LRR	PS51450	Leucine-rich repeat profile.	INLB_LISMO	99-120 121-142 143-164 165-186 187-208 209-230	6	- - - D:99-120 - - - - - D:121-142 - - - - - D:143-164 - - - - - D:165-186 - - - - - D:187-208 - - - - - D:209-230 - -

Biological Unit 5 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LRR	PS51450	Leucine-rich repeat profile.	INLB_LISMO	99-120 121-142 143-164 165-186 187-208 209-230	6	- - - - E:99-120 - - - - - E:121-142 - - - - - E:143-164 - - - - - E:165-186 - - - - - E:187-208 - - - - - E:209-230 -

Biological Unit 6 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LRR	PS51450	Leucine-rich repeat profile.	INLB_LISMO	99-120 121-142 143-164 165-186 187-208 209-230	6	- - - - - F:99-120 - - - - - F:121-142 - - - - - F:143-164 - - - - - F:165-186 - - - - - F:187-208 - - - - - F:209-230

(no "Exon" information available for 2WQU)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:285
 aligned with INLB_LISMO | P25147 from UniProtKB/Swiss-Prot  Length:630

    Alignment length:285
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315     
           INLB_LISMO    36 ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 320
               SCOP domains d2wqua1 A:36-240 automated matches                                                                                                                                                                           d2wqua2 A:241-320 automated matches                                              SCOP domains
               CATH domains 2wquA01 A:36-245 Ribonuclease Inhibitor                                                                                                                                                                           2wquA02 A:246-320  [code=2.60.40.1220, no name defined]                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eehhhhh.hhhhhhhhhhhh.......eehhhhhhh..eee...................eee........hhhhh.......ee...................eee...................eee........hhhhhhh....eee........hhhhh......eee........hhhhh......eee.....ee...ee...eeeee.....................ee..eeeee.............eeee....eeee...eeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------LRR  PDB: A:99-120    LRR  PDB: A:121-142   LRR  PDB: A:143-164   LRR  PDB: A:165-186   LRR  PDB: A:187-208   LRR  PDB: A:209-230   ------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wqu A  36 ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 320
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315

Chain B from PDB  Type:PROTEIN  Length:280
 aligned with INLB_LISMO | P25147 from UniProtKB/Swiss-Prot  Length:630

    Alignment length:285
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315     
           INLB_LISMO    36 ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 320
               SCOP domains d2wqub1 B:36-240 automated matches                                                                                                                                                                           d2wqub2 B:241-320 automated matches                                              SCOP domains
               CATH domains 2wquB01 B:36-245 Ribonuclease Inhibitor                                                                                                                                                                           2wquB02 B:246-320  [code=2.60.40.1220, no      name defined]                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eehhhhh.hhhhhhhhhhhhh......eehhhhhhh..eee...................eee........hhhhh.......ee.......hhhhhh......eee...................eee........hhhhhhh....eee........hhhhh......eee........hhhhh......eee.....ee..........eee............eeee.....ee..eee..-----.eeeeee.eeee....eeee...eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------LRR  PDB: B:99-120    LRR  PDB: B:121-142   LRR  PDB: B:143-164   LRR  PDB: B:165-186   LRR  PDB: B:187-208   LRR  PDB: B:209-230   ------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wqu B  36 ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH-----NEVSFIFYQPVTIGKAKARFHGRVTQPLK 320
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285|     |295       305       315     
                                                                                                                                                                                                                                                                                    286   292

Chain C from PDB  Type:PROTEIN  Length:264
 aligned with INLB_LISMO | P25147 from UniProtKB/Swiss-Prot  Length:630

    Alignment length:283
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315   
           INLB_LISMO    36 ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQP 318
               SCOP domains d2wquc1 C:36-240 automated matches                                                                                                                                                                           d2wquc2         C:241-318 automated matche           s                         SCOP domains
               CATH domains 2wquC01 C:36-245 Ribonuclease Inhibitor                                                                                                                                                                           ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eehhhhh.hhhhhhhhhhhh.......eehhhhhhh..eee...................eee........hhhhh.......ee.......hhhhhh......eee...................eee........hhhhhhh....eee........hhhhh......eee........hhhhh......eee.....ee....--------.............eeee..........-----------.eeee.eeee....eeee...ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------LRR  PDB: C:99-120    LRR  PDB: C:121-142   LRR  PDB: C:143-164   LRR  PDB: C:165-186   LRR  PDB: C:187-208   LRR  PDB: C:209-230   ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wqu C  36 ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI--------PNTVKNTDGSLVTPEIISDDGDYEKPN-----------VSFIFYQPVTIGKAKARFHGRVTQP 318
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245 |       -|      265       275      |  -       295       305       315   
                                                                                                                                                                                                                                             247      256                       282         294

Chain D from PDB  Type:PROTEIN  Length:285
 aligned with INLB_LISMO | P25147 from UniProtKB/Swiss-Prot  Length:630

    Alignment length:285
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316     
           INLB_LISMO    37 TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKE 321
               SCOP domains d2wqud1 D:37-240 automated matches                                                                                                                                                                          d2wqud2 D:241-321 automated matches                                               SCOP domains
               CATH domains 2wquD01 D:37-245 Ribonuclease Inhibitor                                                                                                                                                                          ---------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eehhhhh.hhhhhhhhhhhh.......eehhhhhh...eee...................eee........hhhhh.......ee.......hhhhhh......eee...................eee........hhhhhhh....eee........hhhhh......eee........hhhhh......eee.....ee...ee...eeeee.....................ee..eeeee.............eeee....eeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------LRR  PDB: D:99-120    LRR  PDB: D:121-142   LRR  PDB: D:143-164   LRR  PDB: D:165-186   LRR  PDB: D:187-208   LRR  PDB: D:209-230   ------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wqu D  37 TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKE 321
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316

Chain E from PDB  Type:PROTEIN  Length:284
 aligned with INLB_LISMO | P25147 from UniProtKB/Swiss-Prot  Length:630

    Alignment length:284
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316    
           INLB_LISMO    37 TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 320
               SCOP domains d2wque1 E:37-240 automated matches                                                                                                                                                                          d2wque2 E:241-320 automated matches                                              SCOP domains
               CATH domains 2wquE01 E:37-245 Ribonuclease Inhibitor                                                                                                                                                                          2wquE02 E:246-320  [code=2.60.40.1220, no name defined]                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eehhhhh.hhhhhhhhhhhhh......eehhhhhhh..eee...................eee........hhhhhhh.....ee.......hhhhhh......eee...................eee........hhhhhhh....eee........hhhhh......eee........hhhhh......eee.....ee........eeeee..............ee.....ee..eeeee......eeeee..eeee....eeee...eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------LRR  PDB: E:99-120    LRR  PDB: E:121-142   LRR  PDB: E:143-164   LRR  PDB: E:165-186   LRR  PDB: E:187-208   LRR  PDB: E:209-230   ------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wqu E  37 TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 320
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316

Chain F from PDB  Type:PROTEIN  Length:284
 aligned with INLB_LISMO | P25147 from UniProtKB/Swiss-Prot  Length:630

    Alignment length:284
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316    
           INLB_LISMO    37 TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 320
               SCOP domains d2wquf1 F:37-240 automated matches                                                                                                                                                                          d2wquf2 F:241-320 automated matches                                              SCOP domains
               CATH domains 2wquF01 F:37-245 Ribonuclease Inhibitor                                                                                                                                                                          2wquF02 F:246-320  [code=2.60.40.1220, no name defined]                     CATH domains
           Pfam domains (1) Internalin_N-2wquF19   --------------------------------------------------------------------------------------------------------LRR_4-2wquF01 F:164-206                    LRR_6-2wquF13 F:207-233    ------------------------------LRR_adjacent-2wquF25 F:264-320                            Pfam domains (1)
           Pfam domains (2) Internalin_N-2wquF20   --------------------------------------------------------------------------------------------------------LRR_4-2wquF02 F:164-206                    LRR_6-2wquF14 F:207-233    ------------------------------LRR_adjacent-2wquF26 F:264-320                            Pfam domains (2)
           Pfam domains (3) Internalin_N-2wquF21   --------------------------------------------------------------------------------------------------------LRR_4-2wquF03 F:164-206                    LRR_6-2wquF15 F:207-233    ------------------------------LRR_adjacent-2wquF27 F:264-320                            Pfam domains (3)
           Pfam domains (4) Internalin_N-2wquF22   --------------------------------------------------------------------------------------------------------LRR_4-2wquF04 F:164-206                    LRR_6-2wquF16 F:207-233    ------------------------------LRR_adjacent-2wquF28 F:264-320                            Pfam domains (4)
           Pfam domains (5) Internalin_N-2wquF23   --------------------------------------------------------------------------------------------------------LRR_4-2wquF05 F:164-206                    LRR_6-2wquF17 F:207-233    ------------------------------LRR_adjacent-2wquF29 F:264-320                            Pfam domains (5)
           Pfam domains (6) Internalin_N-2wquF24   --------------------------------------------------------------------------------------------------------LRR_4-2wquF06 F:164-206                    LRR_6-2wquF18 F:207-233    ------------------------------LRR_adjacent-2wquF30 F:264-320                            Pfam domains (6)
           Pfam domains (7) -------------------------------------------------------------------------------------------------------------------------------LRR_4-2wquF07 F:164-206                    ------------------------------------------------------------------------------------------------------------------ Pfam domains (7)
           Pfam domains (8) -------------------------------------------------------------------------------------------------------------------------------LRR_4-2wquF08 F:164-206                    ------------------------------------------------------------------------------------------------------------------ Pfam domains (8)
           Pfam domains (9) -------------------------------------------------------------------------------------------------------------------------------LRR_4-2wquF09 F:164-206                    ------------------------------------------------------------------------------------------------------------------ Pfam domains (9)
          Pfam domains (10) -------------------------------------------------------------------------------------------------------------------------------LRR_4-2wquF10 F:164-206                    ------------------------------------------------------------------------------------------------------------------ Pfam domains (10)
          Pfam domains (11) -------------------------------------------------------------------------------------------------------------------------------LRR_4-2wquF11 F:164-206                    ------------------------------------------------------------------------------------------------------------------ Pfam domains (11)
          Pfam domains (12) -------------------------------------------------------------------------------------------------------------------------------LRR_4-2wquF12 F:164-206                    ------------------------------------------------------------------------------------------------------------------ Pfam domains (12)
         Sec.struct. author .....eehhhhh.hhhhhhhhhhhh.......eehhhhhh...eee...................eee........hhhhh.......ee.......hhhhhh......eee...................eee........hhhhhhh....eee........hhhhh......eee........hhhhh......eee.....ee...ee...eeeee.....................ee..eeeee.............eeee....eeee...eeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------LRR  PDB: F:99-120    LRR  PDB: F:121-142   LRR  PDB: F:143-164   LRR  PDB: F:165-186   LRR  PDB: F:187-208   LRR  PDB: F:209-230   ------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wqu F  37 TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 320
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Immunoglobulin-like beta-sandwich (7299)

Superfamily: E set domains (509)

Family: automated matches (93)

Protein domain: automated matches (93)

Listeria monocytogenes [TaxId: 169963] (7)

1a	d2wqua2	A:241-320
1b	d2wque2	E:241-320
1c	d2wquf2	F:241-320
1d	d2wqub2	B:241-320
1e	d2wquc2	C:241-318
1f	d2wqud2	D:241-321

Class: Alpha and beta proteins (a/b) (23833)

Fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) (112)

Superfamily: L domain-like (93)

Family: Internalin LRR domain (22)

Protein domain: automated matches (5)

Listeria monocytogenes [TaxId: 169963] (5)

2a	d2wqua1	A:36-240
2b	d2wqub1	B:36-240
2c	d2wquc1	C:36-240
2d	d2wqud1	D:37-240
2e	d2wque1	E:37-240
2f	d2wquf1	F:37-240

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Horseshoe (92)

Topology: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) (73)

Homologous Superfamily: Ribonuclease Inhibitor (73)

Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. (4)

1a	2wquA01	A:36-245
1b	2wquB01	B:36-245
1c	2wquC01	C:36-245
1d	2wquD01	D:37-245
1e	2wquE01	E:37-245
1f	2wquF01	F:37-245

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: [code=2.60.40.1220, no name defined] (28)

Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. (4)

2a	2wquA02	A:246-320
2b	2wquE02	E:246-320
2c	2wquF02	F:246-320
2d	2wquB02	B:246-320

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: LRR (77)

Family: LRR_4 (28)

Listeria monocytogenes (18)

1a	LRR_4-2wquF01	F:164-206
1b	LRR_4-2wquF02	F:164-206
1c	LRR_4-2wquF03	F:164-206
1d	LRR_4-2wquF04	F:164-206
1e	LRR_4-2wquF05	F:164-206
1f	LRR_4-2wquF06	F:164-206
1g	LRR_4-2wquF07	F:164-206
1h	LRR_4-2wquF08	F:164-206
1i	LRR_4-2wquF09	F:164-206
1j	LRR_4-2wquF10	F:164-206
1k	LRR_4-2wquF11	F:164-206
1l	LRR_4-2wquF12	F:164-206

Family: LRR_6 (24)

Listeria monocytogenes (10)

2a	LRR_6-2wquF13	F:207-233
2b	LRR_6-2wquF14	F:207-233
2c	LRR_6-2wquF15	F:207-233
2d	LRR_6-2wquF16	F:207-233
2e	LRR_6-2wquF17	F:207-233
2f	LRR_6-2wquF18	F:207-233

Clan: no clan defined [family: Internalin_N] (18)

Family: Internalin_N (18)

Listeria monocytogenes (18)

3a	Internalin_N-2wquF19	F:37-59
3b	Internalin_N-2wquF20	F:37-59
3c	Internalin_N-2wquF21	F:37-59
3d	Internalin_N-2wquF22	F:37-59
3e	Internalin_N-2wquF23	F:37-59
3f	Internalin_N-2wquF24	F:37-59

Clan: no clan defined [family: LRR_adjacent] (15)

Family: LRR_adjacent (15)

Listeria monocytogenes (15)

4a	LRR_adjacent-2wquF25	F:264-320
4b	LRR_adjacent-2wquF26	F:264-320
4c	LRR_adjacent-2wquF27	F:264-320
4d	LRR_adjacent-2wquF28	F:264-320
4e	LRR_adjacent-2wquF29	F:264-320
4f	LRR_adjacent-2wquF30	F:264-320

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (INLB_LISMO | P25147)

molecular function
	GO:0005515		protein binding		Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Asymmetric Unit
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	2wqu
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1d0b	INTERNALIN B LEUCINE RICH REPEAT DOMAIN
1h6t	INTERNALIN B: CRYSTAL STRUCTURE OF FUSED N- TERMINAL DOMAINS.
1m9s	CRYSTAL STRUCTURE OF INTERNALIN B (INLB), A LISTERIAMONOCYTOGENES VIRULENCE PROTEIN CONTAINING SH3-LIKEDOMAINS.
1otm	CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN
1otn	CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN
1oto	CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN
2uzx	STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: CRYSTAL FORM I
2uzy	STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: LOW RESOLUTION, CRYSTAL FORM II
2wqv	INTERNALIN DOMAIN OF LISTERIA MONOCYTOGENES INLB: RHOMBOHEDRAL CRYSTAL FORM
2wqw	DOUBLE-DISULFIDE CROSS-LINKED CRYSTAL DIMER OF THE LISTERIA MONOCYTOGENES INLB INTERNALIN DOMAIN
2wqx	INLB321_4R: S199R, D200R, G206R, A227R, C242A MUTANT OF THE LISTERIA MONOCYTOGENES INLB INTERNALIN DOMAIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 20)

Sites (20, 20)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 36)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (2, 12)

CATH Domains (2, 10)

Pfam Domains (4, 30)

Gene Ontology (1, 1)

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