Chain A from PDB Type:PROTEIN Length:214
aligned with IGKC_MOUSE | P01837 from UniProtKB/Swiss-Prot Length:106
Alignment length:214
1
- - - - - - - - - - |2 12 22 32 42 52 62 72 82 92 102
IGKC_MOUSE - ------------------------------------------------------------------------------------------------------------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 106
SCOP domains d1knoa1 A:1-108 Immunoglobulin light chain kappa variable domain, VL-kappa d1knoa2 A:109-214 Immunoglobulin light chain kappa constant domain, CL-kappa SCOP domains
CATH domains 1knoA01 A:1-108 Immunoglobulins 1knoA02 A:109-211 Immunoglobulins --- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeee...eee.....eeeeeee.......eeeeee.....eeeee.............eeeeee..eeeeee....hhh..eeeeee.............eee.......eeeee...hhhhhh.eeeeeeeee......eeeeeee........................eeeeeeeehhhhhh..eeeeeeee......eeeeee.... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ---------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1kno A 1 QIQMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASSPYTFGGGTKLEILRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 214
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210
Chain B from PDB Type:PROTEIN Length:220
SCOP domains d1knob1 B:1-119 Immunoglobulin heavy chain variable domain, VH d1knob2 B:120-235 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma SCOP domains
CATH domains 1knoB01 B:1-120 Immunoglobulins 1knoB02 B:121-235 Immunoglobulins CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeee..........eeeeeeee...hhh..eeeeee.....eeeeeee......eee........eeeeehhh.eeeeee........eeeeeee..hhhh........eee..........eeeee..........eeeeeeeeeee....eeeee........eee...eee..eeeeeeeeeeehhhhhh...eeeeeehhh.eeeeee..... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1kno B 1 DVKLVESGGGLVQPGGSRKLSCAASGFTFSSFGMHWVRQAPEKGLEWVAYISSGSSTIYYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCARGDYYGSRGAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRG 235
10 20 30 40 50 60 70 80 90 100 110 120|| 132 ||144 154 165| 180 192 202 || || 214| 225 235
121| 138| 162||| 177| 188| 204| || 214|
124 141 164|| 179 191 206 || 216
165| 208|
170 210
Chain C from PDB Type:PROTEIN Length:214
aligned with IGKC_MOUSE | P01837 from UniProtKB/Swiss-Prot Length:106
Alignment length:214
1
- - - - - - - - - - |2 12 22 32 42 52 62 72 82 92 102
IGKC_MOUSE - ------------------------------------------------------------------------------------------------------------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 106
SCOP domains d1knoc1 C:1-108 Immunoglobulin light chain kappa variable domain, VL-kappa d1knoc2 C:109-214 Immunoglobulin light chain kappa constant domain, CL-kappa SCOP domains
CATH domains 1knoC01 C:1-108 Immunoglobulins 1knoC02 C:109-211 Immunoglobulins --- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee.....eeeee.............eeeeee..eeeeee....hhh..eeeeee............eeee.......eeee....hhhhhh.eeeeeeeee......eeeeeee........................eeeeeeeehhhhhh..eeeeeeee......eeeeee.... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ---------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1kno C 1 QIQMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASSPYTFGGGTKLEILRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 214
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210
Chain D from PDB Type:PROTEIN Length:220
SCOP domains d1knod1 D:1-119 Immunoglobulin heavy chain variable domain, VH d1knod2 D:120-235 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma SCOP domains
CATH domains 1knoD01 D:1-120 Immunoglobulins 1knoD02 D:121-235 Immunoglobulins CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeee..eee......eeeeeee...hhh..eeeeee.....eeeeeee......eee........eeeeehhh.eeeee.........eeeeeee..............eeeee........eeeee..........eeeeeeeeeee.....eeee........eee...eee..eeeeeeeeeeehhhhhh...eeeeeehhh.eeeeee..... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1kno D 1 DVKLVESGGGLVQPGGSRKLSCAASGFTFSSFGMHWVRQAPEKGLEWVAYISSGSSTIYYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCARGDYYGSRGAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRG 235
10 20 30 40 50 60 70 80 90 100 110 120|| 132 ||144 154 165| 180 192 202 || || 214| 225 235
121| 138| 162||| 177| 188| 204| || 214|
124 141 164|| 179 191 206 || 216
165| 208|
170 210
Chain E from PDB Type:PROTEIN Length:214
aligned with IGKC_MOUSE | P01837 from UniProtKB/Swiss-Prot Length:106
Alignment length:214
1
- - - - - - - - - - |2 12 22 32 42 52 62 72 82 92 102
IGKC_MOUSE - ------------------------------------------------------------------------------------------------------------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 106
SCOP domains d1knoe1 E:1-108 Immunoglobulin light chain kappa variable domain, VL-kappa d1knoe2 E:109-214 Immunoglobulin light chain kappa constant domain, CL-kappa SCOP domains
CATH domains 1knoE01 E:1-108 Immunoglobulins 1knoE02 E:109-211 Immunoglobulins --- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee.....eeeee.............eeeeee..eeeeee....hhh.eeeeeee...........eeeee.......eeeee...hhhhhh.eeeeeeeee.......eeeeee........eeeee...........eeeeeeeehhhhhh..eeeeeee.......eeeeee.... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ---------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1kno E 1 QIQMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASSPYTFGGGTKLEILRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 214
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210
Chain F from PDB Type:PROTEIN Length:220
SCOP domains d1knof1 F:1-119 Immunoglobulin heavy chain variable domain, VH d1knof2 F:120-235 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma SCOP domains
CATH domains 1knoF01 F:1-120 Immunoglobulins 1knoF02 F:121-235 Immunoglobulins CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeee.........eeeeeeeee...hhh..eeeeee.....eeeeeee......eee.......eeeeeehhh.eeeeeee.......eeeeeee..............eee..........eeeee..........eeeeeeeeeee....eeeee........eee...eee..eeeeeeeeeeehhhhhh...eeeeeehhh.eeeeee..... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1kno F 1 DVKLVESGGGLVQPGGSRKLSCAASGFTFSSFGMHWVRQAPEKGLEWVAYISSGSSTIYYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAMYYCARGDYYGSRGAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRG 235
10 20 30 40 50 60 70 80 90 100 110 120|| 132 ||144 154 165| 180 192 202 || || 214| 225 235
121| 138| 162||| 177| 188| 204| || 214|
124 141 164|| 179 191 206 || 216
165| 208|
170 210
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |