2JIX - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF ABT-007 FAB FRAGMENT WITH THE SOLUBLE DOMAIN OF EPO RECEPTOR

Authors :   Z. Liu, V. S. Stoll, P. Devries, C. G. Jakob, N. Xie, R. L. Simmer, S. E. Lac D. A. Egan, J. E. Harlan, R. R. Lesniewski, E. B. Reilly

Date :   02 Jul 07 (Deposition) - 10 Jul 07 (Release) - 30 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.20

Chains :   Asym./Biol. Unit : A,B,C,D,E,F,G,H,L

Keywords :   Immune System, Receptor, Transmembrane, Receptor Soluble Domain, Antibody, Receptor-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. Liu, V. S. Stoll, P. Devries, C. G. Jakob, N. Xie, R. L. Simmer, S. E. Lacy, D. A. Egan, J. E. Harlan, R. R. Lesniewski, E. B. Reilly
A Potent Erythropoietin-Mimicking Human Antibody Interacts Through A Novel Binding Site.
Blood V. 110 2408 2007
PubMed-ID: 17620453 | Reference-DOI: 10.1182/BLOOD-2007-04-083998

Molecule 1 - ABT-007 FAB FRAGMENT
	Chains	:	A, G, L
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 2 - ERYTHROPOIETIN RECEPTOR
	Chains	:	B, C, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	EPO RECEPTOR SOLUBLE DOMAIN, RESIDUES 25-249
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	EPO-R

Molecule 3 - ABT-007 FAB FRAGMENT
	Chains	:	D, F, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4	5	6	7	8	9
Asymmetric/Biological Unit	:	A	B	C	D	E	F	G	H	L

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2JIX)

(no "Site" information available for 2JIX)

Asymmetric/Biological Unit

No.	Residues
1	A:23	-	A:88
2	A:134	-	A:194
3	B:28	-	B:38
4	B:67	-	B:83
5	C:28	-	C:38
6	D:22	-	D:95
7	D:143	-	D:199
8	E:28	-	E:38
9	E:67	-	E:83
10	F:22	-	F:95
11	F:143	-	F:199
12	G:23	-	G:88
13	G:134	-	G:194
14	H:22	-	H:95
15	H:143	-	H:199
16	L:23	-	L:88
17	L:134	-	L:194

Asymmetric/Biological Unit

No.	Residues
1	Ser A:7	-	Pro A:8
2	Tyr A:94	-	Pro A:95
3	Tyr A:140	-	Pro A:141
4	Glu B:202	-	Pro B:203
5	Glu C:202	-	Pro C:203
6	Phe D:149	-	Pro D:150
7	Glu D:151	-	Pro D:152
8	Glu E:202	-	Pro E:203
9	Phe F:149	-	Pro F:150
10	Glu F:151	-	Pro F:152
11	Ser G:7	-	Pro G:8
12	Tyr G:94	-	Pro G:95
13	Tyr G:140	-	Pro G:141
14	Phe H:149	-	Pro H:150
15	Glu H:151	-	Pro H:152
16	Ser L:7	-	Pro L:8
17	Tyr L:94	-	Pro L:95
18	Tyr L:140	-	Pro L:141

(no "SAP(SNP)/Variant" information available for 2JIX)

Asymmetric/Biological Unit (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FN3	PS50853	Fibronectin type-III domain profile.	EPOR_HUMAN	147-247	3	B:123-223 C:123-223 E:123-223
2	HEMATOPO_REC_L_F1	PS01352	Long hematopoietin receptor, single chain family signature.	EPOR_HUMAN	162-242	3	B:138-218 C:138-218 E:138-218

Asymmetric/Biological Unit (6, 18)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000222139	1	ENSE00001338639	chr19:11495019-11494769	251	EPOR_HUMAN	1-39	39	3	B:8-15 C:10-15 E:8-15	8 6 8
1.2	ENST00000222139	2	ENSE00001246294	chr19:11493908-11493773	136	EPOR_HUMAN	39-84	46	3	B:15-60 C:15-60 E:15-60	46 46 46
1.3	ENST00000222139	3	ENSE00001185968	chr19:11492781-11492606	176	EPOR_HUMAN	84-143	60	3	B:60-119 C:60-119 E:60-119	60 60 60
1.4	ENST00000222139	4	ENSE00000680536	chr19:11492525-11492368	158	EPOR_HUMAN	143-195	53	3	B:119-171 C:119-171 E:119-171	53 53 53
1.5	ENST00000222139	5	ENSE00000680533	chr19:11491885-11491732	154	EPOR_HUMAN	196-247	52	3	B:172-223 C:172-223 E:172-223	52 52 52
1.6	ENST00000222139	6	ENSE00000680531	chr19:11491647-11491560	88	EPOR_HUMAN	247-276	30	3	B:223-224 C:223-224 E:223-224	2 2 2
1.7	ENST00000222139	7	ENSE00000680529	chr19:11489454-11489367	88	EPOR_HUMAN	276-305	30	0	-	-
1.8	ENST00000222139	8	ENSE00001131148	chr19:11489271-11488475	797	EPOR_HUMAN	306-508	203	0	-	-

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:214
 aligned with Q7Z3Y4_HUMAN | Q7Z3Y4 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    
         Q7Z3Y4_HUMAN    23 DIQMTQSPSSLSASVGDTVTITCRASQDISNYLAWFQQKPGKAPKSLIYGASSLQSGVQSKFSGSGSGTDFTLTISSLQPEDFATYYCQQYKSYPVTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 236
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2jixA01 A:1-108 Immunoglobulins                                                                             2jixA02 A:109-214 Immunoglobulins                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee........eeeeeee............eeeee......eeeee..........ee..eeeee........eeeee........eeeee...........eeeee.eehhhhhhh..eeeee.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jix A   1 DIQLTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKRLIYAASSLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCLQHNTYPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 214
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain B from PDB  Type:PROTEIN  Length:217
 aligned with EPOR_HUMAN | P19235 from UniProtKB/Swiss-Prot  Length:508

    Alignment length:217
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       
           EPOR_HUMAN    32 DPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLLTPSDL 248
               SCOP domains --d2jixb1 B:10-116 Erythropoietin (EPO) receptor                                                             d2jixb2 B:117-224 Erythropoietin (EPO) receptor                                                              SCOP domains
               CATH domains --------------2jixB01 B:22-118 Immunoglobulins                                                                 2jixB02 B:119-220 Immunoglobulins                                                                     ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......eeee.....eeeeeee..........eeeeee...........eeee.....eeeeee...........eeeeeee...eeeeeeeehhhhhee....eeeeeeee....eeeeeee......hhh.eeeeeeeehhhhhh...eeee.....eeee.......eeeeeeeeee......ee.......eeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------FN3  PDB: B:123-223 UniProt: 147-247                                                                 - PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------HEMATOPO_REC_L_F1  PDB: B:138-218 UniProt: 162-242                               ------ PROSITE (2)
           Transcript 1 (1) Exon 1.1--------------------------------------------Exon 1.3  PDB: B:60-119 UniProt: 84-143                     ----------------------------------------------------Exon 1.5  PDB: B:172-223 UniProt: 196-247           - Transcript 1 (1)
           Transcript 1 (2) -------Exon 1.2  PDB: B:15-60 UniProt: 39-84         ----------------------------------------------------------Exon 1.4  PDB: B:119-171 UniProt: 143-195            ---------------------------------------------------1. Transcript 1 (2)
                 2jix B   8 DPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLLTPSDL 224
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217

Chain C from PDB  Type:PROTEIN  Length:215
 aligned with EPOR_HUMAN | P19235 from UniProtKB/Swiss-Prot  Length:508

    Alignment length:215
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243     
           EPOR_HUMAN    34 KFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLLTPSDL 248
               SCOP domains d2jixc1 C:10-116 Erythropoietin (EPO) receptor                                                             d2jixc2 C:117-224 Erythropoietin (EPO) receptor                                                              SCOP domains
               CATH domains ------------2jixC01 C:22-118 Immunoglobulins                                                                 2jixC02 C:119-220 Immunoglobulins                                                                     ---- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh........ee.....eeeeee.......hhhhheeeee...........eeeee...eeeeeee............eeeee.....eeeeee.hhhhhee....eeeeeee......eeeeee......hhh.eeeeeeee........eeeee.....eeee.......eeeeeeeeee......ee.......eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------------------------------------------------------------------------FN3  PDB: C:123-223 UniProt: 147-247                                                                 - PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------HEMATOPO_REC_L_F1  PDB: C:138-218 UniProt: 162-242                               ------ PROSITE (2)
           Transcript 1 (1) 1.1   --------------------------------------------Exon 1.3  PDB: C:60-119 UniProt: 84-143                     ----------------------------------------------------Exon 1.5  PDB: C:172-223 UniProt: 196-247           - Transcript 1 (1)
           Transcript 1 (2) -----Exon 1.2  PDB: C:15-60 UniProt: 39-84         ----------------------------------------------------------Exon 1.4  PDB: C:119-171 UniProt: 143-195            ---------------------------------------------------1. Transcript 1 (2)
                 2jix C  10 KFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLLTPSDL 224
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219

Chain D from PDB  Type:PROTEIN  Length:217
 aligned with Q6GMX6_HUMAN | Q6GMX6 from UniProtKB/TrEMBL  Length:465

    Alignment length:217
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       
         Q6GMX6_HUMAN    20 QVQLQESGPGLVKPSETLSLTCTVSGGSISGYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTMSVDTSKNQFSLKLSSVTAADTAVYYCARGRFTYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 236
               SCOP domains d2jixd1 D:1-116 Immunoglobulin heavy chain variable domain, VH                                                      d2jixd2 D:117-217 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 2jixD01 D:1-116 Immunoglobulins                                                                                     2jixD02 D:117-215 Immunoglobulins                                                                  -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee..hhhh.eeeeeee......eeeeeee.....eehhhhhh.eeeeee....eeeeee...hhhhheeeeeeee......ee...eeeee........ee................eeeeeeee.........hhhh..........ee.....eeeeeee...hhhhh....eee...hhhh...eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jix D   1 QVQLQESGPGLVKPSETLSLTCTVSGASISSYYWSWIRQPPGKGLEWIGYIGGEGSTNYNPSLKSRVTISVDTSKNQFSLKLRSVTAADTAVYYCARERLGIGDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain E from PDB  Type:PROTEIN  Length:217
 aligned with EPOR_HUMAN | P19235 from UniProtKB/Swiss-Prot  Length:508

    Alignment length:217
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       
           EPOR_HUMAN    32 DPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLLTPSDL 248
               SCOP domains --d2jixe1 E:10-116 Erythropoietin (EPO) receptor                                                             d2jixe2 E:117-224 Erythropoietin (EPO) receptor                                                              SCOP domains
               CATH domains --------------2jixE01 E:22-118 Immunoglobulins                                                                 2jixE02 E:119-220 Immunoglobulins                                                                     ---- CATH domains
           Pfam domains (1) -----EpoR_lig-bind-2jixE01 E:13-116                                                                          -----fn3-2jixE04 E:122-208                                                                  ---------------- Pfam domains (1)
           Pfam domains (2) -----EpoR_lig-bind-2jixE02 E:13-116                                                                          -----fn3-2jixE05 E:122-208                                                                  ---------------- Pfam domains (2)
           Pfam domains (3) -----EpoR_lig-bind-2jixE03 E:13-116                                                                          -----fn3-2jixE06 E:122-208                                                                  ---------------- Pfam domains (3)
         Sec.struct. author ..hhhhhhhhhhh......eee.......eeeeee...........eeeee......eee..eeee.....eeeeee...........eeeeee.....eeeeeeehhhhh......eeeeeee......eeeeee......hhh.eeeeeeeee.......eeeee.....eeee.......eeeeeeeeee...............eeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------FN3  PDB: E:123-223 UniProt: 147-247                                                                 - PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------HEMATOPO_REC_L_F1  PDB: E:138-218 UniProt: 162-242                               ------ PROSITE (2)
           Transcript 1 (1) Exon 1.1--------------------------------------------Exon 1.3  PDB: E:60-119 UniProt: 84-143                     ----------------------------------------------------Exon 1.5  PDB: E:172-223 UniProt: 196-247           - Transcript 1 (1)
           Transcript 1 (2) -------Exon 1.2  PDB: E:15-60 UniProt: 39-84         ----------------------------------------------------------Exon 1.4  PDB: E:119-171 UniProt: 143-195            ---------------------------------------------------1. Transcript 1 (2)
                 2jix E   8 DPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLLTPSDL 224
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217

Chain F from PDB  Type:PROTEIN  Length:217
 aligned with Q6GMX6_HUMAN | Q6GMX6 from UniProtKB/TrEMBL  Length:465

    Alignment length:217
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       
         Q6GMX6_HUMAN    20 QVQLQESGPGLVKPSETLSLTCTVSGGSISGYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTMSVDTSKNQFSLKLSSVTAADTAVYYCARGRFTYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 236
               SCOP domains d2jixf1 F:1-116 Immunoglobulin heavy chain variable domain, VH                                                      d2jixf2 F:117-217 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 2jixF01 F:1-116 Immunoglobulins                                                                                     2jixF02 F:117-215 Immunoglobulins                                                                  -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee........eeeee.......eeeeeee......eeeeeee....eee........ee.......eeeee.........eeeeee.............eeeee...............................eee.....ee...........ee..........ee..ee............ee..ee..........ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jix F   1 QVQLQESGPGLVKPSETLSLTCTVSGASISSYYWSWIRQPPGKGLEWIGYIGGEGSTNYNPSLKSRVTISVDTSKNQFSLKLRSVTAADTAVYYCARERLGIGDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain G from PDB  Type:PROTEIN  Length:214
 aligned with Q7Z3Y4_HUMAN | Q7Z3Y4 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    
         Q7Z3Y4_HUMAN    23 DIQMTQSPSSLSASVGDTVTITCRASQDISNYLAWFQQKPGKAPKSLIYGASSLQSGVQSKFSGSGSGTDFTLTISSLQPEDFATYYCQQYKSYPVTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 236
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2jixG01 G:1-108 Immunoglobulins                                                                             2jixG02 G:109-214 Immunoglobulins                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhh...eeeeeeee......eeeeeee..ee....................eeeeeee..hhhhhh..eeeeeee......eeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jix G   1 DIQLTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKRLIYAASSLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCLQHNTYPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 214
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain H from PDB  Type:PROTEIN  Length:217
 aligned with Q6GMX6_HUMAN | Q6GMX6 from UniProtKB/TrEMBL  Length:465

    Alignment length:217
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       
         Q6GMX6_HUMAN    20 QVQLQESGPGLVKPSETLSLTCTVSGGSISGYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTMSVDTSKNQFSLKLSSVTAADTAVYYCARGRFTYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 236
               SCOP domains d2jixh1 H:1-116 Immunoglobulin heavy chain variable domain, VH                                                      d2jixh2 H:117-217 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 2jixH01 H:1-116 Immunoglobulins                                                                                     2jixH02 H:117-215 Immunoglobulins                                                                  -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.........eeeeeeeee..hhhh.eeeeeee......eeeeeee....eee...hhhhh.eeee....eeeeeee.......eeeeeeee...........eee..........eeee...hhhhh......eeeeeeee.....eeee........eee...ee.....eeeeeee.............eeee......ee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jix H   1 QVQLQESGPGLVKPSETLSLTCTVSGASISSYYWSWIRQPPGKGLEWIGYIGGEGSTNYNPSLKSRVTISVDTSKNQFSLKLRSVTAADTAVYYCARERLGIGDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain L from PDB  Type:PROTEIN  Length:214
 aligned with Q7Z3Y4_HUMAN | Q7Z3Y4 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    
         Q7Z3Y4_HUMAN    23 DIQMTQSPSSLSASVGDTVTITCRASQDISNYLAWFQQKPGKAPKSLIYGASSLQSGVQSKFSGSGSGTDFTLTISSLQPEDFATYYCQQYKSYPVTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 236
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2jixL01 L:1-108 Immunoglobulins                                                                             2jixL02 L:109-214 Immunoglobulins                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee...........eeeeee......eeeee..........eeeeeeeeeee.....eeeeee........eeeee.........eeeeeeeeeehhhhhh..eeeeeee........eeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jix L   1 DIQLTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKRLIYAASSLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCLQHNTYPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 214
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Immunoglobulin-like beta-sandwich (7299)

Superfamily: Fibronectin type III (212)

Family: Fibronectin type III (180)

Protein domain: Erythropoietin (EPO) receptor (6)

Human (Homo sapiens) [TaxId: 9606] (6)

1a	d2jixb1	B:10-116
1b	d2jixb2	B:117-224
1c	d2jixc1	C:10-116
1d	d2jixc2	C:117-224
1e	d2jixe1	E:10-116
1f	d2jixe2	E:117-224

Superfamily: Immunoglobulin (5995)

Family: C1 set domains (antibody constant domain-like) (3013)

Protein domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma (608)

Human (Homo sapiens) [TaxId: 9606] (179)

2a	d2jixd2	D:117-217
2b	d2jixf2	F:117-217
2c	d2jixh2	H:117-217

Family: V set domains (antibody variable domain-like) (1919)

Protein domain: Immunoglobulin heavy chain variable domain, VH (658)

Synthetic construct [TaxId: 32630] (3)

3a	d2jixd1	D:1-116
3b	d2jixf1	F:1-116
3c	d2jixh1	H:1-116

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

Escherichia coli. Organism_taxid: 562. (10)

1a	2jixA02	A:109-214
1b	2jixG02	G:109-214
1c	2jixL02	L:109-214
1d	2jixA01	A:1-108
1e	2jixG01	G:1-108
1f	2jixL01	L:1-108
1g	2jixD02	D:117-215
1h	2jixF02	F:117-215
1i	2jixH02	H:117-215
1j	2jixD01	D:1-116
1k	2jixF01	F:1-116
1l	2jixH01	H:1-116
1m	2jixB02	B:119-220
1n	2jixC02	C:119-220
1o	2jixE02	E:119-220
1p	2jixB01	B:22-118
1q	2jixC01	C:22-118
1r	2jixE01	E:22-118

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: E-set (290)

Family: EpoR_lig-bind (10)

Homo sapiens (Human) (9)

1a	EpoR_lig-bind-2jixE01	E:13-116
1b	EpoR_lig-bind-2jixE02	E:13-116
1c	EpoR_lig-bind-2jixE03	E:13-116

Family: fn3 (66)

Homo sapiens (Human) (52)

2a	fn3-2jixE04	E:122-208
2b	fn3-2jixE05	E:122-208
2c	fn3-2jixE06	E:122-208

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,G,L (Q7Z3Y4_HUMAN | Q7Z3Y4)

Chain B,C,E (EPOR_HUMAN | P19235)

molecular function
	GO:0004896	cytokine receptor activity	Combining with a cytokine and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
	GO:0004900	erythropoietin receptor activity	Combining with erythropoietin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004888	transmembrane signaling receptor activity	Combining with an extracellular or intracellular signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity or state as part of signal transduction.
biological process
	GO:0007420	brain development	The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
	GO:0019221	cytokine-mediated signaling pathway	A series of molecular signals initiated by the binding of a cytokine to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
	GO:0046697	decidualization	The cellular and vascular changes occurring in the endometrium of the pregnant uterus just after the onset of blastocyst implantation. This process involves the proliferation and differentiation of the fibroblast-like endometrial stromal cells into large, polyploid decidual cells that eventually form the maternal component of the placenta.
	GO:0038162	erythropoietin-mediated signaling pathway	A series of molecular signals initiated by the binding of erythropoietin (EPO) to the erythropoietin receptor (EPO-R) on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
	GO:0007507	heart development	The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
	GO:1903206	negative regulation of hydrogen peroxide-induced cell death	Any process that stops, prevents or reduces the frequency, rate or extent of hydrogen peroxide-induced cell death.
	GO:0043524	negative regulation of neuron apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in neurons.
	GO:0070374	positive regulation of ERK1 and ERK2 cascade	Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.
	GO:0008284	positive regulation of cell proliferation	Any process that activates or increases the rate or extent of cell proliferation.
	GO:0007204	positive regulation of cytosolic calcium ion concentration	Any process that increases the concentration of calcium ions in the cytosol.
	GO:0010976	positive regulation of neuron projection development	Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0009897	external side of plasma membrane	The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain D,F,H (Q6GMX6_HUMAN | Q6GMX6)

Asymmetric/Biological Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2jix)

	Sites
(no "Sites" information available for 2jix)

	Cis Peptide Bonds
		Glu B:202 - Pro B:203	[ RasMol ]
		Glu C:202 - Pro C:203	[ RasMol ]
		Glu D:151 - Pro D:152	[ RasMol ]
		Glu E:202 - Pro E:203	[ RasMol ]
		Glu F:151 - Pro F:152	[ RasMol ]
		Glu H:151 - Pro H:152	[ RasMol ]
		Phe D:149 - Pro D:150	[ RasMol ]
		Phe F:149 - Pro F:150	[ RasMol ]
		Phe H:149 - Pro H:150	[ RasMol ]
		Ser A:7 - Pro A:8	[ RasMol ]
		Ser G:7 - Pro G:8	[ RasMol ]
		Ser L:7 - Pro L:8	[ RasMol ]
		Tyr A:140 - Pro A:141	[ RasMol ]
		Tyr A:94 - Pro A:95	[ RasMol ]
		Tyr G:140 - Pro G:141	[ RasMol ]
		Tyr G:94 - Pro G:95	[ RasMol ]
		Tyr L:140 - Pro L:141	[ RasMol ]
		Tyr L:94 - Pro L:95	[ RasMol ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2jix
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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Access by UniProt ID/Accession number
	EPOR_HUMAN \| P19235
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	Q6GMX6_HUMAN \| Q6GMX6
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	Q7Z3Y4_HUMAN \| Q7Z3Y4
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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	0014
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
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		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	EPOR_HUMAN \| P19235
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	Q6GMX6_HUMAN \| Q6GMX6
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	Q7Z3Y4_HUMAN \| Q7Z3Y4
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	EPOR_HUMAN \| P19235	:	1cn4 1eba 1ebp 1eer 1ern 2mv6 4y5v 4y5x 4y5y
UniProtKB/TrEMBL
	Q6GMX6_HUMAN \| Q6GMX6	:	1bey 1za6 3b2u 3b2v 3d0l 3zl4 4d9l 4fqq 4lkx 4npy 4qhk 4qhl 4qhm 4qhn
	Q7Z3Y4_HUMAN \| Q7Z3Y4	:	1axs 1l7i 1pg7 1s78 4ogx 4ogy 4pub

1cn4	ERYTHROPOIETIN COMPLEXED WITH EXTRACELLULAR DOMAINS OF ERYTHROPOIETIN RECEPTOR
1eba	COMPLEX BETWEEN THE EXTRACELLULAR DOMAIN OF ERYTHROPOIETIN (EPO) RECEPTOR [EBP] AND AN INACTIVE PEPTIDE [EMP33] CONTAINS 3,5- DIBROMOTYROSINE IN POSITION 4 (DENOTED DBY)
1ebp	COMPLEX BETWEEN THE EXTRACELLULAR DOMAIN OF ERYTHROPOIETIN (EPO) RECEPTOR [EBP] AND AN AGONIST PEPTIDE [EMP1]
1eer	CRYSTAL STRUCTURE OF HUMAN ERYTHROPOIETIN COMPLEXED TO ITS RECEPTOR AT 1.9 ANGSTROMS
1ern	NATIVE STRUCTURE OF THE EXTRACELLULAR DOMAIN OF ERYTHROPOIETIN (EPO) RECEPTOR [EBP]

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (17, 17)

Cis Peptide Bonds (18, 18)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 6)

Exons (6, 18)

Sequences/Alignments

Classification and Annotation

SCOP Domains (3, 12)

CATH Domains (1, 18)

Pfam Domains (2, 6)

Gene Ontology (24, 24)

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Entries Sharing at Least One Protein Chain (UniProt ID)

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