Chain A from PDB Type:PROTEIN Length:215
aligned with A0A5E3_MOUSE | A0A5E3 from UniProtKB/TrEMBL Length:237
Alignment length:215
32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232
A0A5E3_MOUSE 23 QIVLTQSPAIMSASLGERVTMTCTASSSVTSSYLHWYQQKPGSSPKLWIYSTSNLASGVPTRFSGSGSGTSYSLTISSMEAEDAATYYCHQYHRFPPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 237
SCOP domains d1ob1a1 A:1-106A Immunoglobulin light chain kappa variable domain, VL-kappa d1ob1a2 A:107-213 Immunoglobulin light chain kappa constant domain, CL-kappa SCOP domains
CATH domains 1ob1A01 A:1-107 Immunoglobulins 1ob1A02 A:108-210 Immunoglobulins --- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eee..eeee.....eeeeee.........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee...........eeeee........eeee..........eeeeeeeeeee........eee..........eee.........eeeeeeeeeehhhhh...eeee............eeee.... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ob1 A 1 DIVMTQTPAIMSAFLGERVTMTCTATSSLSSSYLHWYQQKPGSSPKLWIYTTSNLASGVPSRFSGSGSGTSYSLTISSMEAEDAATYYCHQFHHSPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 213
10 20 |29 39 49 59 69 79 89 99 108 118 128 138 148 158 168 178 188 198 208
27A 106A
Chain A from PDB Type:PROTEIN Length:215
aligned with IGKC_MOUSE | P01837 from UniProtKB/Swiss-Prot Length:106
Alignment length:215
1
- - - - - - - - - - 1 11 21 31 41 51 61 71 81 91 101
IGKC_MOUSE - -------------------------------------------------------------------------------------------------------------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 106
SCOP domains d1ob1a1 A:1-106A Immunoglobulin light chain kappa variable domain, VL-kappa d1ob1a2 A:107-213 Immunoglobulin light chain kappa constant domain, CL-kappa SCOP domains
CATH domains 1ob1A01 A:1-107 Immunoglobulins 1ob1A02 A:108-210 Immunoglobulins --- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eee..eeee.....eeeeee.........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee...........eeeee........eeee..........eeeeeeeeeee........eee..........eee.........eeeeeeeeeehhhhh...eeee............eeee.... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ---------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ob1 A 1 DIVMTQTPAIMSAFLGERVTMTCTATSSLSSSYLHWYQQKPGSSPKLWIYTTSNLASGVPSRFSGSGSGTSYSLTISSMEAEDAATYYCHQFHHSPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 213
10 20 |29 39 49 59 69 79 89 99 108 118 128 138 148 158 168 178 188 198 208
27A 106A
Chain B from PDB Type:PROTEIN Length:219
SCOP domains d1ob1b1 B:1-113 Immunoglobulin heavy chain variable domain, VH d1ob1b2 B:114-212 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma SCOP domains
CATH domains 1ob1B01 B:1-113 Immunoglobulins 1ob1B02 B:114-212 Immunoglobulins CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeee...eee......eeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhh...eeeee.....eeeeee...hhhhheeeeeeeehhhhh.........eeeee........eeeee...........eeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeee..........eeeeeehhhheeeeee... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ob1 B 1 ELQLVQSGPQLKKPGETVRISCKASGYTFTTAGIQWVQRLPGKDLKWIGWINTHSGVPQYADDFKGRFAFSLETSASTAFLQIINLKNEDTATYFCARNYYRFDGGMDFWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEP 212
10 20 30 40 50 | 59 69 79 ||| 86 96 |||103 113 123 133 143 153 163 173 183 193 203
52A 82A|| 100A||
82B| 100B|
82C 100C
Chain C from PDB Type:PROTEIN Length:96
aligned with MSP1_PLAFP | P50495 from UniProtKB/Swiss-Prot Length:1726
Alignment length:96
1622 1632 1642 1652 1662 1672 1682 1692 1702
MSP1_PLAFP 1613 NISQHQCVKKQCPENSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSSSN 1708
SCOP domains d1ob1c1 C:1-45 d1ob1c2 C:46-96 Merozoite surface protein 1 (MSP-1) SCOP domains
CATH domains 1ob1C01 C:1-44 Laminin 1ob1C02 C:45-96 Laminin CATH domains
Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...............eeee.......eeee...eeee..eeee.......hhhhhh...eeee...........eeee......eehhhhee.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------ Transcript
1ob1 C 1 NISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSHHH 96
10 20 30 40 50 60 70 80 90
Chain C from PDB Type:PROTEIN Length:96
aligned with Q25976_PLAFA | Q25976 from UniProtKB/TrEMBL Length:539
Alignment length:96
435 445 455 465 475 485 495 505 515
Q25976_PLAFA 426 NISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSSSN 521
SCOP domains d1ob1c1 C:1-45 d1ob1c2 C:46-96 Merozoite surface protein 1 (MSP-1) SCOP domains
CATH domains 1ob1C01 C:1-44 Laminin 1ob1C02 C:45-96 Laminin CATH domains
Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...............eeee.......eeee...eeee..eeee.......hhhhhh...eeee...........eeee......eehhhhee.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------ Transcript
1ob1 C 1 NISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSHHH 96
10 20 30 40 50 60 70 80 90
Chain D from PDB Type:PROTEIN Length:215
aligned with A0A5E3_MOUSE | A0A5E3 from UniProtKB/TrEMBL Length:237
Alignment length:215
32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232
A0A5E3_MOUSE 23 QIVLTQSPAIMSASLGERVTMTCTASSSVTSSYLHWYQQKPGSSPKLWIYSTSNLASGVPTRFSGSGSGTSYSLTISSMEAEDAATYYCHQYHRFPPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 237
SCOP domains d1ob1d1 D:1-106A Immunoglobulin light chain kappa variable domain, VL-kappa d1ob1d2 D:107-213 Immunoglobulin light chain kappa constant domain, CL-kappa SCOP domains
CATH domains 1ob1D01 D:1-107 Immunoglobulins 1ob1D02 D:108-210 Immunoglobulins --- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eee..eeee.....eeeeee.........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee...........eeeee........eeee..........eeeeeeeeeee........eee..........eee.........eeeeeeeeeehhhhh...eeee............eeee.... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ob1 D 1 DIVMTQTPAIMSAFLGERVTMTCTATSSLSSSYLHWYQQKPGSSPKLWIYTTSNLASGVPSRFSGSGSGTSYSLTISSMEAEDAATYYCHQFHHSPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 213
10 20 |29 39 49 59 69 79 89 99 108 118 128 138 148 158 168 178 188 198 208
27A 106A
Chain D from PDB Type:PROTEIN Length:215
aligned with IGKC_MOUSE | P01837 from UniProtKB/Swiss-Prot Length:106
Alignment length:215
1
- - - - - - - - - - 1 11 21 31 41 51 61 71 81 91 101
IGKC_MOUSE - -------------------------------------------------------------------------------------------------------------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 106
SCOP domains d1ob1d1 D:1-106A Immunoglobulin light chain kappa variable domain, VL-kappa d1ob1d2 D:107-213 Immunoglobulin light chain kappa constant domain, CL-kappa SCOP domains
CATH domains 1ob1D01 D:1-107 Immunoglobulins 1ob1D02 D:108-210 Immunoglobulins --- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eee..eeee.....eeeeee.........eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee...........eeeee........eeee..........eeeeeeeeeee........eee..........eee.........eeeeeeeeeehhhhh...eeee............eeee.... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ---------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ob1 D 1 DIVMTQTPAIMSAFLGERVTMTCTATSSLSSSYLHWYQQKPGSSPKLWIYTTSNLASGVPSRFSGSGSGTSYSLTISSMEAEDAATYYCHQFHHSPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC 213
10 20 |29 39 49 59 69 79 89 99 108 118 128 138 148 158 168 178 188 198 208
27A 106A
Chain E from PDB Type:PROTEIN Length:219
SCOP domains d1ob1e1 E:1-113 Immunoglobulin heavy chain variable domain, VH d1ob1e2 E:114-212 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma SCOP domains
CATH domains 1ob1E01 E:1-113 Immunoglobulins 1ob1E02 E:114-212 Immunoglobulins CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeee...eee......eeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhh...eeeee.....eeeeee...hhhhheeeeeeeehhhhh.........eeeee........eeeee...........eeeeeeeeee.....eeee.hhh....eeeeeeeee..eeeeeeeeee..........eeeeeehhhheeeeee... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1ob1 E 1 ELQLVQSGPQLKKPGETVRISCKASGYTFTTAGIQWVQRLPGKDLKWIGWINTHSGVPQYADDFKGRFAFSLETSASTAFLQIINLKNEDTATYFCARNYYRFDGGMDFWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEP 212
10 20 30 40 50 | 59 69 79 ||| 86 96 |||103 113 123 133 143 153 163 173 183 193 203
52A 82A|| 100A||
82B| 100B|
82C 100C
Chain F from PDB Type:PROTEIN Length:97
aligned with MSP1_PLAFP | P50495 from UniProtKB/Swiss-Prot Length:1726
Alignment length:97
1622 1632 1642 1652 1662 1672 1682 1692 1702
MSP1_PLAFP 1613 NISQHQCVKKQCPENSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSSSNF 1709
SCOP domains d1ob1f1 F:1-45 d1ob1f2 F:46-97 Merozoite surface protein 1 (MSP-1) SCOP domains
CATH domains 1ob1F01 F:1-44 Laminin 1ob1F02 F:45-97 Laminin CATH domains
Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...............eeee.......eeee...eeee..eeee.......hhhhhh...eeeeeee.....eeeeeee......eehhhhee..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------- Transcript
1ob1 F 1 NISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSHHHH 97
10 20 30 40 50 60 70 80 90
Chain F from PDB Type:PROTEIN Length:97
aligned with Q25976_PLAFA | Q25976 from UniProtKB/TrEMBL Length:539
Alignment length:97
435 445 455 465 475 485 495 505 515
Q25976_PLAFA 426 NISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSSSNF 522
SCOP domains d1ob1f1 F:1-45 d1ob1f2 F:46-97 Merozoite surface protein 1 (MSP-1) SCOP domains
CATH domains 1ob1F01 F:1-44 Laminin 1ob1F02 F:45-97 Laminin CATH domains
Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...............eeee.......eeee...eeee..eeee.......hhhhhh...eeeeeee.....eeeeeee......eehhhhee..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------- Transcript
1ob1 F 1 NISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSHHHH 97
10 20 30 40 50 60 70 80 90
Legend: |
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→ Mismatch |
(orange background) |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |