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(-) Description

Title :  CRYSTAL STRUCTURE OF MYOSIN X MOTOR DOMAIN IN PRE-POWERSTROKE STATE
 
Authors :  T. Isabet, F. Blanc, H. L. Sweeney, A. Houdusse
Date :  04 Feb 16  (Deposition) - 07 Sep 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Myosin, Motor Domain, Molecular Motor, Pre-Powerstroke State, Motility, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Ropars, Z. Yang, T. Isabet, F. Blanc, K. Zhou, T. Lin, X. Liu, P. Hissier, F. Samazan, B. Amigues, E. D. Yang, H. Park, O. Pylypenko, M. Cecchini, C. V. Sindelar, H. L. Sweeney, A. Houdusse
The Myosin X Motor Is Optimized For Movement On Actin Bundles.
Nat Commun V. 7 12456 2016
PubMed-ID: 27580874  |  Reference-DOI: 10.1038/NCOMMS12456

(-) Compounds

Molecule 1 - UNCONVENTIONAL MYOSIN-X
    Chains: A, B
    Engineered: YES
    Expression System: UNIDENTIFIED BACULOVIRUS
    Expression System Taxid: 10469
    Gene: MYO10, KIAA0799
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: UNCONVENTIONAL MYOSIN-10

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 29)

Asymmetric Unit (5, 29)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2BEF2Ligand/IonBERYLLIUM TRIFLUORIDE ION
3EDO18Ligand/Ion1,2-ETHANEDIOL
4MG2Ligand/IonMAGNESIUM ION
5SO45Ligand/IonSULFATE ION
Biological Unit 1 (4, 11)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2BEF1Ligand/IonBERYLLIUM TRIFLUORIDE ION
3EDO8Ligand/Ion1,2-ETHANEDIOL
4MG-1Ligand/IonMAGNESIUM ION
5SO41Ligand/IonSULFATE ION
Biological Unit 2 (4, 16)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2BEF1Ligand/IonBERYLLIUM TRIFLUORIDE ION
3EDO10Ligand/Ion1,2-ETHANEDIOL
4MG-1Ligand/IonMAGNESIUM ION
5SO44Ligand/IonSULFATE ION

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:104 , PRO A:105 , TYR A:106 , GLN A:107 , TYR A:113 , GLY A:160 , ALA A:161 , GLY A:162 , LYS A:163 , THR A:164 , GLU A:165 , ASN A:215 , MG A:802 , BEF A:803 , EDO A:810 , HOH A:909 , HOH A:916 , HOH A:946 , HOH A:984 , HOH A:998 , HOH A:1073 , HOH A:1151 , HOH A:1277 , HOH A:1282binding site for residue ADP A 801
02AC2SOFTWARETHR A:164 , SER A:219 , ADP A:801 , BEF A:803 , HOH A:909 , HOH A:1073binding site for residue MG A 802
03AC3SOFTWARESER A:159 , GLY A:160 , LYS A:163 , ASN A:215 , SER A:218 , SER A:219 , GLY A:437 , ADP A:801 , MG A:802 , HOH A:909 , HOH A:1006 , HOH A:1073binding site for residue BEF A 803
04AC4SOFTWARETRP A:486 , ILE A:487 , GLU A:664binding site for residue EDO A 804
05AC5SOFTWARESER A:156 , GLY A:157 , CYS A:636 , TYR A:659 , HOH A:1011binding site for residue EDO A 805
06AC6SOFTWAREASP A:485 , TRP A:486 , ASP A:488binding site for residue EDO A 806
07AC7SOFTWARETYR A:214 , ASN A:440 , HOH A:928 , HOH A:1142binding site for residue EDO A 807
08AC8SOFTWAREGLU A:322 , GLU A:325 , HOH A:936binding site for residue EDO A 808
09AC9SOFTWAREARG A:195 , HOH A:1066 , PRO B:537 , ARG B:538 , VAL B:539 , ALA B:540 , HOH B:1098binding site for residue SO4 A 809
10AD1SOFTWAREGLU A:165 , ADP A:801 , HOH A:950 , HOH A:951 , HOH A:1160binding site for residue EDO A 810
11AD2SOFTWAREGLU A:15 , PHE A:42 , THR A:43 , TYR A:44binding site for residue EDO A 811
12AD3SOFTWAREGLU A:158 , TYR A:214 , PHE A:438 , GLU A:439 , ASN A:440 , LYS A:638 , MET A:641 , HOH A:928binding site for residue EDO A 812
13AD4SOFTWAREASN B:104 , PRO B:105 , TYR B:106 , GLN B:107 , TYR B:113 , GLY B:160 , ALA B:161 , GLY B:162 , LYS B:163 , THR B:164 , GLU B:165 , ASN B:215 , MG B:802 , BEF B:803 , EDO B:805 , EDO B:817 , HOH B:910 , HOH B:911 , HOH B:963 , HOH B:970 , HOH B:1127 , HOH B:1272 , HOH B:1329 , HOH B:1360binding site for residue ADP B 801
14AD5SOFTWARETHR B:164 , SER B:219 , ADP B:801 , BEF B:803 , HOH B:910 , HOH B:963binding site for residue MG B 802
15AD6SOFTWARESER B:159 , GLY B:160 , LYS B:163 , ASN B:215 , SER B:218 , SER B:219 , GLY B:437 , ADP B:801 , MG B:802 , HOH B:910 , HOH B:963 , HOH B:1002binding site for residue BEF B 803
16AD7SOFTWARELEU B:244 , LEU B:245 , GLU B:246 , PHE B:436 , GLU B:447 , ILE B:451 , HOH B:905 , HOH B:1356binding site for residue EDO B 804
17AD8SOFTWARESER B:102 , ASN B:104 , ALA B:161 , GLY B:162 , SER B:166 , ADP B:801 , HOH B:927binding site for residue EDO B 805
18AD9SOFTWAREARG B:252 , ASP B:396 , GLU B:562 , HOH B:1092 , HOH B:1313binding site for residue EDO B 806
19AE1SOFTWAREARG A:14 , HIS A:19 , GLN A:52 , LEU B:182 , GLU B:183 , LEU B:184 , GLU B:188binding site for residue EDO B 807
20AE2SOFTWAREGLU B:158 , TYR B:214 , PHE B:438 , GLU B:439 , ASN B:440 , LYS B:638 , MET B:641 , HOH B:1018binding site for residue EDO B 808
21AE3SOFTWARETYR B:243 , LEU B:244 , GLN B:614 , PHE B:615 , SER B:618 , HOH B:972binding site for residue EDO B 809
22AE4SOFTWARESER B:156 , GLY B:157 , ARG B:635 , CYS B:636 , TYR B:659 , SER B:660 , HOH B:1224binding site for residue EDO B 810
23AE5SOFTWAREARG B:14 , HIS B:75 , GLY B:76 , ARG B:658 , LEU B:663 , HOH B:1217binding site for residue SO4 B 811
24AE6SOFTWAREARG B:14 , HOH B:1024binding site for residue SO4 B 812
25AE7SOFTWARELYS B:498 , LYS B:499binding site for residue SO4 B 813
26AE8SOFTWAREASN B:595 , ASN B:596 , HOH B:1047 , HOH B:1117 , HOH B:1291binding site for residue SO4 B 814
27AE9SOFTWAREASN B:248 , ARG B:249 , ARG B:252 , GLU B:257 , HOH B:904 , HOH B:1079binding site for residue EDO B 815
28AF1SOFTWAREGLU A:477 , LYS A:721 , MET B:378 , PHE B:379binding site for residue EDO B 816
29AF2SOFTWAREGLU B:165 , ADP B:801 , HOH B:991 , HOH B:1108binding site for residue EDO B 817

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I0H)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asn A:61 -Glu A:62
2Leu A:182 -Glu A:183
3Gly A:345 -Gly A:346
4Arg A:381 -Gly A:382
5Glu B:7 -Gly B:8
6Arg B:381 -Gly B:382

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I0H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I0H)

(-) Exons   (0, 0)

(no "Exon" information available for 5I0H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:731
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee..eeeeeeeeeee..eeeeee....eeeee.hhh....eee..........hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee..........hhhhhhhhhh........hhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhheeee..eeeee..eeeeeeee.....eeeeeeeee..hhhhhh........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...eee...eee.hhhhhhhhhhhhh.hhhhhhhhhheeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhh....ee.......eeeeee..eeeeee..hhhhhhhh..hhhhhhhhhh..hhhhhhhhh............hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhh......hhhhhhhhhhhhhh.....eee...eeeehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i0h A   3 NFFTEGTRVWLRENGQHFPSTVNSCAEGIVVFRTDYGQVFTYKQSTITHQKVTAMHPTNEEGVDDMASLTELHGGSIMYNLFQRYKRNQIYTYIGSILASVNPYQPIAGLYEPATMEQYSRRHLGELPPHIFAIANECYRCLWKRHDNQCILISGESGAGKTESTKLILKFLSVISQQSLELSLKEKTSCVERAILESSPIMEAFGNAKTVYNNNSSRFGKFVQLNICQKGNIQGGRIVDYLLEKNRVVRQNPGERNYHIFYALLAGLEHEEREEFYLSTPENYHYLNQSGCVEDKTISDQESFREVITAMDVMQFSKEEVREVSRLLAGILHLGNIEFITAGGAQVSFKTALGRSAELLGLDPTQLTDALTQRSMFLRGEEILTPLNVQQAVDSRDSLAMALYACCFEWVIKKINSRIKGNEDFKSIGILDIFGFENFEVNHFEQFNINYANEKLQEYFNKHIFSLEQLEYSREGLVWEDIDWIDNGECLDLIEKKLGLLALINEESHFPQATDSTLLEKLHSQHANNHFYVKPRVAVNNFGVKHYAGEVQYDVRGILEKNRDTFRDDLLNLLRESRFDFIYDLFEHVSSRNNQDRRPTVSSQFKDSLHSLMATLSSSNPFFVRCIKPNMQKMPDQFDQAVVLNQLRYSGMLETVRIRKAGYAVRRPFQDFYKRYKVLMRNLALPEDVRGKCTSLLQLYDASNSEWQLGKTKVFLRESLEQKLEKRREEE 741
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592     ||610       620       630       640       650       660       670       680       690       700       710       720       730       740 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             598|                                                                                                                                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              607                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:723
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeee..eeee....eee.hhhhh....eee..........hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee..........hhhhhhhhhh........hhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhheeee..eeeee..eeeeeeee.....eeeeeeeee..hhhhhh........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhh......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...eee...eee..hhhhhhhhhhhh.hhhhhhhhhheeeeee..eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhh....ee.......eeeeee..eeeeee..hhhhhhhh..hhhhhhhhhh..hhhhhhhhh.............hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhh......hhhhhhhhhhhhhh.....eee...eeeehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i0h B   6 TEGTRVWLRENGQHFPSTVNVVFRTDYGQVFTYKQSTITHQKVTAMHPTNEEGVDDMASLTELHGGSIMYNLFQRYKRNQIYTYIGSILASVNPYQPIAGLYEPATMEQYSRRHLGELPPHIFAIANECYRCLWKRHDNQCILISGESGAGKTESTKLILKFLSVISQQSLELSLKEKTSCVERAILESSPIMEAFGNAKTVYNNNSSRFGKFVQLNICQKGNIQGGRIVDYLLEKNRVVRQNPGERNYHIFYALLAGLEHEEREEFYLSTPENYHYLNQSGCVEDKTISDQESFREVITAMDVMQFSKEEVREVSRLLAGILHLGNIEFITAGGAQVSFKTALGRSAELLGLDPTQLTDALTQRSMFLRGEEILTPLNVQQAVDSRDSLAMALYACCFEWVIKKINSRIKGNEDFKSIGILDIFGFENFEVNHFEQFNINYANEKLQEYFNKHIFSLEQLEYSREGLVWEDIDWIDNGECLDLIEKKLGLLALINEESHFPQATDSTLLEKLHSQHANNHFYVKPRVAVNNFGVKHYAGEVQYDVRGILEKNRDTFRDDLLNLLRESRFDFIYDLFEHVSSRNNQDTRRPTVSSQFKDSLHSLMATLSSSNPFFVRCIKPNMQKMPDQFDQAVVLNQLRYSGMLETVRIRKAGYAVRRPFQDFYKRYKVLMRNLALPEDVRGKCTSLLQLYDASNSEWQLGKTKVFLRESLEQKLEKRREEE 741
                                    15        25|       41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       608       618       628       638       648       658       668       678       688       698       708       718       728       738   
                                              25|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    599|                                                                                                                                      
                                               32                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     607
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I0H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I0H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I0H)

(-) Gene Ontology  (34, 34)

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  5i0h
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  MYO10_HUMAN | Q9HD67
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        MYO10_HUMAN | Q9HD67: 2lw9 3au4 3au5 3pzd 5i0i 5kg8

(-) Related Entries Specified in the PDB File

5hmo 5HMO IS RELATED TO THE SAME PUBLICATION
5hmp 5HMP IS RELATED TO THE SAME PUBLICATION