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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TYPE-I SIGNAL PEPTIDASE FROM STAPHYLOCOCCUS AUREUS (SPSB).
 
Authors :  P. G. Young, Y. T. Ting, E. N. Baker
Date :  05 Nov 14  (Deposition) - 23 Sep 15  (Release) - 17 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Spsb Type-I Signal Peptidase, Cell Secretion, Mbp Fusion Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. T. Ting, P. W. R. Harris, G. Batot, M. A. Brimble, E. N. Baker, P. G. Young
Peptide Binding To A Bacterial Signal Peptidase Visualized By Peptide Tethering And Carrier-Driven Crystallization
Iucrj V. 3 10 2016
PubMed: search  |  Reference-DOI: 10.1107/S2052252515019971

(-) Compounds

Molecule 1 - MALTOSE-BINDING PERIPLASMIC PROTEIN,SIGNAL PEPTIDASE IB
    Chains: A
    EC Number: 3.4.21.89
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMBP-PPROEXHTA
    Expression System Strain: K12
    Expression System Taxid: 83333
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 33-393, UNP RESIDUES 26-191
    Gene: MALE, Z5632, ECS5017, SPSB, SACOL0969
    Mutation: YES
    Organism Taxid: 83334, 93062
    Strain: COL
    Synonym: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN,SPASE IB,LEADER PEPTIDASE IB

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1MAL1Ligand/IonMALTOSE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:20 , LYS A:21 , TRP A:68 , ALA A:69 , ASP A:71 , ARG A:72 , GLU A:117 , GLU A:159 , PRO A:160 , TYR A:161 , TRP A:346 , HOH A:852 , HOH A:887 , HOH A:889 , HOH A:900 , HOH A:935 , HOH A:961binding site for residue MAL A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WVG)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:389 -Pro A:390

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WVG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WVG)

(-) Exons   (0, 0)

(no "Exon" information available for 4WVG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:513
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....hhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhh....eeeee..hhhhhhhh........hhhhhh..hhhhhhhhee..ee..eeeeee..eeeee.........hhhhhhhhhhhhhhh..eee.....hhhhhhhhhh....eeeeee..eeeeeeee..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh..eeeeeehhhhhhhhhhhh..eeee...ee..ee...eeeeeeeee.....hhhhhhhhhhhh..hhhhhhhhhhhh...ee.hhhhhhhhh.hhhhhhhhhhhhh.ee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.eeeee..............eeeeee...........eeeeee..eeeeeeeee.....eeee..eeee..eee.hhhhhhhhhh.........ee.hhh.............eeeee........hhhhhh.ee...eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wvg A  12 MLVIWINGDKGYNGLAQVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNAGAIVTPYTIKGEAMDPTLKDGERVAVNIVGYKTGLEKGNVVVFHANNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFW 526
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401     ||412       423       433       443       453       463       473       483       493       503       513       523   
                                                                                                                                                                                                                                                                                                                                                                                                                                     407|         421|                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                      409          423
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WVG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WVG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WVG)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:389 - Pro A:390   [ RasMol ]  
 

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  MALE_ECO57 | P0AEY0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LEP_STAAC | Q5HHB9: 4wvh 4wvi 4wvj
        MALE_ECO57 | P0AEY0: 1a7l 1anf 1dmb 1ez9 1ezo 1ezp 1fqa 1fqb 1fqc 1fqd 1hsj 1iud 1jvx 1jvy 1jw4 1jw5 1lax 1lls 1mdp 1mdq 1mg1 1mh3 1mh4 1mpb 1mpc 1mpd 1n3w 1n3x 1nl5 1nmu 1omp 1peb 1r6z 1svx 1t0k 1y4c 1ytv 1ziu 1zjl 1zkb 1zmg 2v93 3io4 3io6 3mbp 3osq 3osr 3vd8 4feb 4mbp 4my2 4wgi 4wrn 4wth 4wvh 4wvi 4wvj 4xa2 4xai 4xaj 4xhs 4ys9 5bmy 5c7r 5cl1 5dfm 5e24 5e7u 5edu 5fio 5ii4 5jj4 5jon 5jtq 5jtr 5k94 5ldf 5lof 5t03 5t05 5t0a 5ttd

(-) Related Entries Specified in the PDB File

4wvh 4wvi 4wvj