5FLF - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   DISEASE LINKED MUTATION IN FGFR

Authors :   N. Thiyagarajan, T. D. Bunney, M. Katan

Date :   26 Oct 15 (Deposition) - 30 Mar 16 (Release) - 10 Aug 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.58

Chains :   Asym. Unit : A,B,C,D,E
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)

Keywords :   Transferase, Auto-Activating, Cancer, Growth Factor, Receptor, Mutation; (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Patani, T. D. Bunney, N. Thiyagarajan, R. A. Norman, D. Ogg, J. Breed P. Ashford, A. Potterton, M. Edwards, S. V. Williams, G. S. Thomson, C. S. Pang, M. A. Knowles, A. L. Breeze, C. Orengo, C. Phillips, M. Katan
Landscape Of Activating Cancer Mutations In Fgfr Kinases And Their Differential Responses To Inhibitors In Clinical Use.
Oncotarget V. 7 24252 2016
PubMed-ID: 26992226 | Reference-DOI: 10.18632/ONCOTARGET.8132

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 1
	Chains	:	A, B, C, D, E
	EC Number	:	2.7.10.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PJ821
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	CODON PLUS LAMBDA 37
	Expression System Vector Type	:	PLASMID
	Fragment	:	KINASE DOMAIN, UNP RESIDUES 458-765
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FGFR-1, BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1, BFGFR, BFGF-R-1, FMS-LIKE TYROSINE KINASE 2, FLT-2, N-SAM, PROTO-ONCOGENE C-FGR

		1	2	3	4	5
Asymmetric Unit	:	A	B	C	D	E
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 19)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CL	5	Ligand/Ion	CHLORIDE ION
3	PGE	4	Ligand/Ion	TRIETHYLENE GLYCOL
4	SO4	9	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 4 (2, 8)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	PGE	3	Ligand/Ion	TRIETHYLENE GLYCOL
4	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 5 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL
4	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR D:726 , ASN D:727 , GLU D:728 , HOH D:2085 , LYS E:617	BINDING SITE FOR RESIDUE SO4 E1762
02	AC2	SOFTWARE	THR B:726 , ASN B:727 , ARG D:577 , GLY D:698 , SER D:699 , HOH D:2088	BINDING SITE FOR RESIDUE SO4 D1764
03	AC3	SOFTWARE	ARG D:570	BINDING SITE FOR RESIDUE SO4 D1765
04	AC4	SOFTWARE	ARG A:622 , ARG A:646 , TYR A:654 , ARG A:661	BINDING SITE FOR RESIDUE SO4 A1763
05	AC5	SOFTWARE	ARG C:622 , ARG C:646 , TYR C:654 , LYS C:656 , THR C:657 , ARG C:661	BINDING SITE FOR RESIDUE SO4 C1764
06	AC6	SOFTWARE	ARG B:622 , ARG B:646 , TYR B:654 , LYS B:656 , ARG B:661 , HOH B:2048	BINDING SITE FOR RESIDUE SO4 B1765
07	AC7	SOFTWARE	LYS D:523 , ARG D:622 , LEU D:644 , ARG D:646 , TYR D:654 , LYS D:656	BINDING SITE FOR RESIDUE SO4 D1766
08	AC8	SOFTWARE	ASP D:735 , HIS D:738 , GLN D:743 , LYS E:542 , TYR E:605	BINDING SITE FOR RESIDUE SO4 D1767
09	AC9	SOFTWARE	LYS D:566 , ARG D:576	BINDING SITE FOR RESIDUE SO4 D1768
10	BC1	SOFTWARE	ALA C:615 , HIS C:679 , GLN C:680 , VAL C:683 , PRO C:741 , ARG C:744 , PRO C:745 , THR C:746 , PHE C:747 , LYS C:748	BINDING SITE FOR RESIDUE PGE C1765
11	BC2	SOFTWARE	HIS B:649 , SER D:530	BINDING SITE FOR RESIDUE PGE D1769
12	BC3	SOFTWARE	THR D:746 , PHE D:747 , LYS D:748 , GLN D:749 , CL D:1772 , HOH D:2045	BINDING SITE FOR RESIDUE PGE D1770
13	BC4	SOFTWARE	ARG D:470 , TRP D:471 , GLU D:472 , LEU D:500	BINDING SITE FOR RESIDUE PGE D1771
14	BC5	SOFTWARE	PHE B:747	BINDING SITE FOR RESIDUE CL B1766
15	BC6	SOFTWARE	PHE D:747 , PGE D:1770	BINDING SITE FOR RESIDUE CL D1772
16	BC7	SOFTWARE	LYS D:514	BINDING SITE FOR RESIDUE CL D1773
17	BC8	SOFTWARE	TYR D:701 , HIS D:717	BINDING SITE FOR RESIDUE CL D1774
18	BC9	SOFTWARE	THR A:726 , ASN A:727	BINDING SITE FOR RESIDUE ACT A1764

(no "SS Bond" information available for 5FLF)

(no "Cis Peptide Bond" information available for 5FLF)

(no "SAP(SNP)/Variant" information available for 5FLF)

(no "PROSITE Motif" information available for 5FLF)

(no "Exon" information available for 5FLF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhh.eeeeeeeeee..eeeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......ee........hhhhhhhhhhh.eehhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5flf A 460 VSEYELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDGIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS 762
                                   469       479       489       499       509       519       529       539       549       559       569       579    || 596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756      
                                                                                                                                                      584|                                                                                                                                                                          
                                                                                                                                                       592

Chain B from PDB  Type:PROTEIN  Length:292
                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhh.eeeeeeee.....eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......ee........hhhhhhhhhh..eehhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5flf B 460 VSEYELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDGIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQ 764
                                   469       479       489       499       509       519       529       539       549       559       569       579|      602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762  
                                                                                                                                                 579|                                                                                                                                                                           
                                                                                                                                                  593

Chain C from PDB  Type:PROTEIN  Length:283
                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeeeeee....eeeeeeee.....eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......ee.......hhhhhhhhhhh..eehhhhhhhhhhhhhhhhhh.........hhhhhhhhhh...........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5flf C 464 ELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDGIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSN 763
                                   473       483       493      |507       517       527       537       547       557       567       577||     600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760   
                                                              500|                                                                      578|                                                                                                                                                                           
                                                               505                                                                       592

Chain D from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.eeeeeeeee....eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......ee........hhhhhhhhhhhheehhhhhhhhhhhhhhhhh..........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5flf D 465 LPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDGIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSN 763
                                   474       484       494       504       514       524       534       544       554       564       574       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763
                                                                                                                                               582|                                                                                                                                                                           
                                                                                                                                                592

Chain E from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhh.eeeeeee.eeeeeee...........eeeeeee.....hhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee........hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..........hhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5flf E 466 PEDPRWELPRDRLVLGKPLGQVVLAEAIGLDKDKPNRVTKVAVKMLKATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARREQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLAGRLPVKWMAPEALFDGIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALT 761
                                   475       490       500       510      |522       532       542       552       562       572    || 597       607       617       627       637       661       671       681       691       701   ||  713       723       733       743       753        
                                            484|                        517|                                                      577|                                                 645|                                          705|                                                     
                                             490                         520                                                       593                                                  660                                           708

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5FLF)

(no "CATH Domain" information available for 5FLF)

(no "Pfam Domain" information available for 5FLF)

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	Cis Peptide Bonds
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Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (4, 19)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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