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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN FIBROBLAST GROWTH FACTOR RECEPTOR 1 KINASE DOMAIN IN COMPLEX WITH COMPOUND 1
 
Authors :  R. A. Norman, J. Breed, D. Ogg
Date :  14 May 12  (Deposition) - 06 Jun 12  (Release) - 27 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinase, Atp Binding, Phosphorylation, Trans-Membrane, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. A. Norman, A. K. Schott, D. M. Andrews, J. Breed, K. M. Foote, A. P. Garner, D. Ogg, J. P. Orme, J. H. Pink, K. Roberts, D. A. Rudge, A. P. Thomas, A. G. Leach
Protein-Ligand Crystal Structures Can Guide The Design Of Selective Inhibitors Of The Fgfr Tyrosine Kinase.
J. Med. Chem. V. 55 5003 2012
PubMed-ID: 22612866  |  Reference-DOI: 10.1021/JM3004043

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 1
    Chains: A, B
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: KINASE DOMAIN (UNP RESIDUES 458-765)
    Gene: FGFR1, BFGFR, CEK, FGFBR, FLG, FLT2, HBGFR
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-1, BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1, BFGFR, BFGF-R-1, FMS-LIKE TYROSINE KINASE 2, FLT-2, N-SAM, PROTO-ONCOGENE C- FGR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
10S72Ligand/Ion5-BROMO-N~4~-(3-METHYL-1H-PYRAZOL-5-YL)-N~2~-[2-(PYRIDIN-3-YL)ETHYL]PYRIMIDINE-2,4-DIAMINE
2EDO4Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:484 , GLY A:485 , VAL A:492 , ALA A:512 , VAL A:561 , GLU A:562 , TYR A:563 , ALA A:564 , SER A:565 , GLY A:567 , ASP A:641 , HOH A:918BINDING SITE FOR RESIDUE 0S7 A 801
2AC2SOFTWAREGLU A:531 , MET A:535 , ASP A:641 , GLY A:643BINDING SITE FOR RESIDUE EDO A 802
3AC3SOFTWARETRP A:684 , TYR A:701 , ARG A:718 , MET A:719 , TRP A:737 , HOH A:917BINDING SITE FOR RESIDUE EDO A 803
4AC4SOFTWARELEU B:484 , ALA B:512 , VAL B:561 , GLU B:562 , TYR B:563 , ALA B:564 , SER B:565 , GLY B:567 , ARG B:627 , ASN B:628 , LEU B:630 , ALA B:640 , ASP B:641BINDING SITE FOR RESIDUE 0S7 B 801
5AC5SOFTWAREGLU B:531 , ASP B:641 , PHE B:642 , GLY B:643BINDING SITE FOR RESIDUE EDO B 802
6AC6SOFTWARETRP B:684 , TYR B:701 , LEU B:713 , HIS B:717 , ARG B:718 , MET B:719 , TRP B:737BINDING SITE FOR RESIDUE EDO B 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F63)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4F63)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F63)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F63)

(-) Exons   (0, 0)

(no "Exon" information available for 4F63)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4f63a_ A: Fibroblast growth factor receptor 1                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeee...eeeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.......hhhhh..........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f63 A 464 ELPEDPRWELPRDRLVLGKPLGQVVLAEAIGLPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS 762
                                   473       483 ||    498 ||    512       522       532       542       552       562       572      |594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754        
                                               485|      500|                                                                       579|                                                                                                                                                                          
                                                491       505                                                                        592                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains d4f63b_ B: Fibroblast growth factor receptor 1                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhh.eeeeeeeee...eeeeeeee.....eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f63 B 461 SEYELPEDPRWELPRDRLVLGKPLGEGAGQVVLAEAIGLPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLADYYKKGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALT 761
                                   470       480       491       505       515       525       535       545       555       565       575 ||    601       611       621       631       641   ||  660       670       680       690       700       710       720       730       740       750       760 
                                                     488|       500|                                                                     577|                                                645| 656|                                                                                                     
                                                      490        505                                                                      594                                                 652  660
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F63)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F63)

(-) Gene Ontology  (99, 99)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4f63
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  FGFR1_HUMAN | P11362
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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGFR1_HUMAN | P11362: 1agw 1cvs 1evt 1fgi 1fgk 1fq9 1xr0 2cr3 2fgi 3c4f 3dpk 3gqi 3gql 3js2 3krj 3krl 3kxx 3ky2 3ojv 3rhx 3tt0 4f64 4f65 4nk9 4nka 4nks 4rwi 4rwj 4rwk 4rwl 4uwb 4uwc 4uwy 4v01 4v04 4v05 4wun 4zsa 5a46 5a4c 5am6 5am7 5b7v 5ew8 5flf 5uq0 5ur1 5vnd

(-) Related Entries Specified in the PDB File

4f64 4f65