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(-) Description

Title :  FGFR1 KINASE DOMAIN COMPLEX WITH SN37333 IN REVERSIBLE BINDING MODE
 
Authors :  Y. Yosaatmadja, W. -K. Paik, J. B. Smaill, C. J. Squire
Date :  09 Feb 17  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Li, C. P. Guise, R. Taghipouran, Y. Yosaatmadja, A. Ashoorzadeh, W. K. Paik, C. J. Squire, S. Jiang, J. Luo, Y. Xu, Z. C. Tu, X. Lu, X. Ren, A. V. Patterson, J. B. Smaill, K. Ding
2-Oxo-3, 4-Dihydropyrimido[4, 5-D]Pyrimidinyl Derivatives A New Irreversible Pan Fibroblast Growth Factor Receptor (Fgfr) Inhibitors.
Eur J Med Chem V. 135 531 2017
PubMed-ID: 28521156  |  Reference-DOI: 10.1016/J.EJMECH.2017.04.049

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 1
    Chains: A, B
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FGFR1, BFGFR, CEK, FGFBR, FLG, FLT2, HBGFR
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-1,BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1,BFGF-R-1, FMS-LIKE TYROSINE KINASE 2,FLT-2,N-SAM,PROTO-ONCOGENE C-FGR

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1YY92Ligand/Ion3-(2,6-DICHLORO-3,5-DIMETHOXYPHENYL)-1-{1-[4-(DIMETHYLAMINO)BUT-2-ENOYL]PIPERIDIN-4-YL}-7-(PHENYLAMINO)-3,4-DIHYDROPYRIMIDO[4,5-D]PYRIMIDIN-2(1H)-ONE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1YY91Ligand/Ion3-(2,6-DICHLORO-3,5-DIMETHOXYPHENYL)-1-{1-[4-(DIMETHYLAMINO)BUT-2-ENOYL]PIPERIDIN-4-YL}-7-(PHENYLAMINO)-3,4-DIHYDROPYRIMIDO[4,5-D]PYRIMIDIN-2(1H)-ONE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1YY91Ligand/Ion3-(2,6-DICHLORO-3,5-DIMETHOXYPHENYL)-1-{1-[4-(DIMETHYLAMINO)BUT-2-ENOYL]PIPERIDIN-4-YL}-7-(PHENYLAMINO)-3,4-DIHYDROPYRIMIDO[4,5-D]PYRIMIDIN-2(1H)-ONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:484 , GLU A:486 , VAL A:492 , LYS A:514 , GLU A:531 , VAL A:559 , VAL A:561 , GLU A:562 , ALA A:564 , GLY A:567 , ALA A:640 , ASP A:641binding site for residue YY9 A 801
2AC2SOFTWARELEU B:484 , VAL B:492 , LYS B:514 , GLU B:531 , VAL B:559 , VAL B:561 , GLU B:562 , TYR B:563 , ALA B:564 , ALA B:640 , ASP B:641binding site for residue YY9 B 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UR1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5UR1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UR1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UR1)

(-) Exons   (0, 0)

(no "Exon" information available for 5UR1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeeeeee...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ur1 A 464 ELPEDPRWELPRDRLVLGKPLGEGFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQE 765
                                   473       483   ||  494       504       514       524       534       544       554       564       574    || 589       599       609       619       629       639    || 667       677       687       697       707       717       727       737       747       757        
                                                 487|                                                                                       579|                                                        644|                                                                                                      
                                                  489                                                                                        585                                                         663                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeeeee.....eeeeeeee.......eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ur1 B 464 ELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSN 763
                                   473       483       493       505       515       525       535       545       555       565       575  ||   600       610       620       630       640   ||  668       678       688       698       708       718       728       738       748       758     
                                                               501|                                                                       578|                                               644|                                                                                                    
                                                                504                                                                        594                                                663
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UR1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UR1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UR1)

(-) Gene Ontology  (99, 99)

Asymmetric Unit(hide GO term definitions)

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  FGFR1_HUMAN | P11362
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGFR1_HUMAN | P11362: 1agw 1cvs 1evt 1fgi 1fgk 1fq9 1xr0 2cr3 2fgi 3c4f 3dpk 3gqi 3gql 3js2 3krj 3krl 3kxx 3ky2 3ojv 3rhx 3tt0 4f63 4f64 4f65 4nk9 4nka 4nks 4rwi 4rwj 4rwk 4rwl 4uwb 4uwc 4uwy 4v01 4v04 4v05 4wun 4zsa 5a46 5a4c 5am6 5am7 5b7v 5ew8 5flf 5uq0 5vnd

(-) Related Entries Specified in the PDB File

5uok 5uol 5uom 5uon