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(-) Description

Title :  FGFR1 IN COMPLEX WITH PONATINIB (CO-CRYSTALLISATION).
 
Authors :  J. Tucker, T. Klein, J. Breed, A. Breeze, R. Overman, C. Phillips, R. A. N
Date :  10 Sep 14  (Deposition) - 10 Dec 14  (Release) - 22 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.33
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Tucker, T. Klein, J. Breed, A. L. Breeze, R. Overman, C. Phillips, R. A. Norman
Structural Insights Into Fgfr Kinase Isoform Selectivity: Diverse Binding Modes Of Azd4547 And Ponatinib In Complex With Fgfr1 And Fgfr4
Structure V. 22 1764 2014
PubMed-ID: 25465127  |  Reference-DOI: 10.1016/J.STR.2014.09.019

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 1 (FMS-RELATED TYROSINE KINASE 2, PFEIFFER SYNDROME), ISOFORM CRA_B
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE, UNP RESIDUES 22-329
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric Unit (3, 18)
No.NameCountTypeFull Name
10LI2Ligand/Ion3-(IMIDAZO[1,2-B]PYRIDAZIN-3-YLETHYNYL)-4-METHYL-N-{4-[(4-METHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL)PHENYL}BENZAMIDE
2EDO10Ligand/Ion1,2-ETHANEDIOL
3SO46Ligand/IonSULFATE ION
Biological Unit 1 (3, 11)
No.NameCountTypeFull Name
10LI1Ligand/Ion3-(IMIDAZO[1,2-B]PYRIDAZIN-3-YLETHYNYL)-4-METHYL-N-{4-[(4-METHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL)PHENYL}BENZAMIDE
2EDO6Ligand/Ion1,2-ETHANEDIOL
3SO44Ligand/IonSULFATE ION
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
10LI1Ligand/Ion3-(IMIDAZO[1,2-B]PYRIDAZIN-3-YLETHYNYL)-4-METHYL-N-{4-[(4-METHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL)PHENYL}BENZAMIDE
2EDO4Ligand/Ion1,2-ETHANEDIOL
3SO42Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG B:570 , ARG B:627 , THR B:657 , ASN B:659 , ARG B:661 , HOH B:2063BINDING SITE FOR RESIDUE SO4 B1764
02AC2SOFTWAREARG A:470 , TRP A:471 , GLU A:472 , LEU A:473 , LEU A:500 , LEU A:548 , GLY A:549BINDING SITE FOR RESIDUE SO4 A1766
03AC3SOFTWARESER B:597 , VAL B:601 , PHE B:694 , ASN B:724 , CYS B:725 , THR B:726 , LEU B:729BINDING SITE FOR RESIDUE SO4 B1765
04AC4SOFTWARESER A:597 , PHE A:694 , ASN A:724 , CYS A:725 , THR A:726 , LEU A:729BINDING SITE FOR RESIDUE SO4 A1767
05AC5SOFTWAREGLY A:539 , LYS A:540 , LYS A:618 , HOH A:2032 , HOH A:2161BINDING SITE FOR RESIDUE SO4 A1768
06AC6SOFTWAREARG A:470 , LYS A:618 , HIS A:679 , EDO A:1774 , HOH A:2162BINDING SITE FOR RESIDUE SO4 A1769
07AC7SOFTWAREALA B:575BINDING SITE FOR RESIDUE EDO B1766
08AC8SOFTWAREARG A:470 , GLU A:533 , LYS A:618 , CYS A:619 , ILE A:620BINDING SITE FOR RESIDUE EDO A1770
09AC9SOFTWARETRP A:684 , VAL A:688 , TYR A:701 , ARG A:718 , MET A:719 , TRP A:737 , HOH A:2085BINDING SITE FOR RESIDUE EDO A1771
10BC1SOFTWARETRP B:684 , TYR B:701 , LEU B:713 , ARG B:718 , MET B:719 , TRP B:737 , HOH B:2073BINDING SITE FOR RESIDUE EDO B1767
11BC2SOFTWAREPRO B:466 , ILE B:529 , MET B:532 , GLU B:533 , LYS B:536 , THR B:552BINDING SITE FOR RESIDUE EDO B1768
12BC3SOFTWARETHR A:746 , PHE A:747 , LYS A:748 , HOH A:2097BINDING SITE FOR RESIDUE EDO A1772
13BC4SOFTWARELYS A:656 , GLY A:703 , VAL A:704 , PRO A:705 , HOH A:2116 , GLU B:708BINDING SITE FOR RESIDUE EDO A1773
14BC5SOFTWAREARG A:470 , TRP A:471 , SO4 A:1769BINDING SITE FOR RESIDUE EDO A1774
15BC6SOFTWARETYR A:572 , LEU A:595 , SER A:602 , CYS A:603 , GLN A:606 , ASN A:635BINDING SITE FOR RESIDUE EDO A1775
16BC7SOFTWAREMET B:535 , GLY B:539 , ILE B:544 , ILE B:545 , ASN B:546 , LEU B:547BINDING SITE FOR RESIDUE EDO B1769
17BC8SOFTWARELEU A:484 , ALA A:512 , LYS A:514 , GLU A:531 , MET A:534 , MET A:535 , ILE A:538 , ILE A:545 , VAL A:561 , GLU A:562 , TYR A:563 , ALA A:564 , LEU A:614 , ILE A:620 , HIS A:621 , LEU A:630 , ILE A:639 , ALA A:640 , ASP A:641BINDING SITE FOR RESIDUE 0LI A1776
18BC9SOFTWAREALA B:512 , LYS B:514 , GLU B:531 , MET B:534 , ILE B:545 , VAL B:559 , VAL B:561 , GLU B:562 , TYR B:563 , ALA B:564 , LEU B:614 , CYS B:619 , ILE B:620 , HIS B:621 , LEU B:630 , ILE B:639 , ALA B:640 , ASP B:641 , PHE B:642BINDING SITE FOR RESIDUE 0LI B1770

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4V01)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4V01)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4V01)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4V01)

(-) Exons   (0, 0)

(no "Exon" information available for 4V01)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.eeeeeeee.eeeeeeee.......eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee..............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v01 A 465 LPEDPRWELPRDRLVLGKPLGGQVVLAEAIGLDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQE 765
                                   474       484||     498  ||   510       520       530       540       550       560       570       594       604       614       624       634       652       662       672       682       692       702       712       722       732       742       752       762   
                                              485|        501|                                                                        579|                                             642|                                                                                                                  
                                               490         504                                                                         594                                              651                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhh.eeeeeeeee..eeeeeeee......eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee..............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v01 B 461 SEYELPEDPRWELPRDRLVLGKPLGEGGQVVLAEAIGLDPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSN 763
                                   470       480      |492       505       515       525       535       545       555       565       575  ||   600       610       620       630       640 ||    658       668       678       688       698       708       718       728       738       748       758     
                                                    487|        501|                                                                      578|                                             642|                                                                                                                
                                                     490         505                                                                       594                                              651
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4V01)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4V01)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4V01)

(-) Gene Ontology  (99, 108)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        D3DSX2_HUMAN | D3DSX2: 5a46
        FGFR1_HUMAN | P11362: 1agw 1cvs 1evt 1fgi 1fgk 1fq9 1xr0 2cr3 2fgi 3c4f 3dpk 3gqi 3gql 3js2 3krj 3krl 3kxx 3ky2 3ojv 3rhx 3tt0 4f63 4f64 4f65 4nk9 4nka 4nks 4rwi 4rwj 4rwk 4rwl 4uwb 4uwc 4uwy 4v04 4v05 4wun 4zsa 5a46 5a4c 5am6 5am7 5b7v 5ew8 5flf 5uq0 5ur1 5vnd
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        D3DSX2_HUMAN | D3DSX2: 4v04 4v05

(-) Related Entries Specified in the PDB File

4uxq FGFR4 IN COMPLEX WITH PONATINIB
4v04 FGFR1 IN COMPLEX WITH PONATINIB.
4v05 FGFR1 IN COMPLEX WITH AZD4547.