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(-) Description

Title :  FGFR1 IN COMPLEX WITH DOVITINIB
 
Authors :  T. Klein, N. Vajpai, J. J. Phillips, G. Davies, G. A. Holdgate, C. Philli J. A. Tucker, R. A. Norman, A. S. Scott, D. R. Higazi, D. Lowe, G. S. Thomp A. L. Breeze
Date :  05 Jun 15  (Deposition) - 05 Aug 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.63
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Kinase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Klein, N. Vajpai, J. J. Phillips, G. Davies, G. A. Holdgate, C. Phillips, J. A. Tucker, R. A. Norman, A. D. Scott, D. R. Higazi, D. Lowe, G. S. Thompson, A. L. Breeze
Structural And Dynamic Insights Into The Energetics Of Activation Loop Rearrangement In Fgfr1 Kinase.
Nat. Commun. V. 6 7877 2015
PubMed-ID: 26203596  |  Reference-DOI: 10.1038/NCOMMS8877

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 1 (FMS-RELATED TYROSINE KINASE 2, PFEIFFER SYNDROME), ISOFORM CRA_B
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
138O2Ligand/Ion4-AMINO-5-FLUORO-3-[5-(4-METHYLPIPERAZIN-1-YL)-1H-BENZIMIDAZOL-2-YL]QUINOLIN-2(1H)-ONE
2EDO4Ligand/Ion1,2-ETHANEDIOL
3SO43Ligand/IonSULFATE ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
138O1Ligand/Ion4-AMINO-5-FLUORO-3-[5-(4-METHYLPIPERAZIN-1-YL)-1H-BENZIMIDAZOL-2-YL]QUINOLIN-2(1H)-ONE
2EDO3Ligand/Ion1,2-ETHANEDIOL
3SO42Ligand/IonSULFATE ION
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
138O1Ligand/Ion4-AMINO-5-FLUORO-3-[5-(4-METHYLPIPERAZIN-1-YL)-1H-BENZIMIDAZOL-2-YL]QUINOLIN-2(1H)-ONE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3SO41Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:531 , MET A:535 , ASP A:641 , PHE A:642 , GLY A:643 , 38O A:1769BINDING SITE FOR RESIDUE EDO A1766
2AC2SOFTWAREGLU B:531 , MET B:535 , ASP B:641 , PHE B:642 , GLY B:643 , 38O B:1767BINDING SITE FOR RESIDUE EDO B1766
3AC3SOFTWARETRP A:684 , TYR A:701 , ARG A:718 , MET A:719 , TRP A:737 , HOH A:2072BINDING SITE FOR RESIDUE EDO A1767
4AC4SOFTWAREALA A:615 , THR A:746 , PHE A:747 , LYS A:748 , HOH A:2079BINDING SITE FOR RESIDUE EDO A1768
5AC5SOFTWARELEU A:484 , VAL A:492 , ALA A:512 , VAL A:561 , GLU A:562 , TYR A:563 , ALA A:564 , GLY A:567 , LEU A:630 , EDO A:1766BINDING SITE FOR RESIDUE 38O A1769
6AC6SOFTWARELEU B:484 , VAL B:492 , ALA B:512 , VAL B:561 , GLU B:562 , TYR B:563 , ALA B:564 , GLY B:567 , LEU B:630 , EDO B:1766BINDING SITE FOR RESIDUE 38O B1767
7AC7SOFTWARELYS A:540 , LYS A:618BINDING SITE FOR RESIDUE SO4 A1770
8AC8SOFTWAREARG B:570 , ARG B:627 , THR B:657 , ASN B:659 , ARG B:661 , HOH B:2056 , HOH B:2094BINDING SITE FOR RESIDUE SO4 B1768
9AC9SOFTWAREARG A:570 , ARG A:627 , THR A:657 , ASN A:659 , ARG A:661 , HOH A:2059 , HOH A:2124BINDING SITE FOR RESIDUE SO4 A1771

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A46)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Gly A:487 -Cys A:488
2Asp A:503 -Lys A:504
3Gly A:580 -Leu A:581
4Ile B:648 -His B:649
5His B:649 -His B:650

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A46)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A46)

(-) Exons   (0, 0)

(no "Exon" information available for 5A46)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeeeee.....eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeee......hhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a46 A 464 ELPEDPRWELPRDRLVLGKPLGEGCFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQEY 766
                                   473       483       493       503       513       523       533       543       553       563       573       593       603       613       623       633       643   ||  656       666       676       686       696       706       716       726       736       746       756       766
                                                                                                                                               581|                                                    647|                                                                                                                   
                                                                                                                                                592                                                     651                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:298
                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhh.eeeeeeeee...eeeeeeeee.......eeeeeeeee....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee......................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a46 B 458 AGVSEYELPEDPRWELPRDRLVLGKPLGEGCFGQVVLAEAIGLDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQEY 766
                                   467       477       487       497    || 509       519       529       539       549       559       569       579|      598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758        
                                                                      502|                                                                       579|                                                                                                                                                                                 
                                                                       505                                                                        589
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A46)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A46)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A46)

(-) Gene Ontology  (99, 108)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Gly A:580 - Leu A:581   [ RasMol ]  
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  5a46
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  FGFR1_HUMAN | P11362
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGFR1_HUMAN | P11362: 1agw 1cvs 1evt 1fgi 1fgk 1fq9 1xr0 2cr3 2fgi 3c4f 3dpk 3gqi 3gql 3js2 3krj 3krl 3kxx 3ky2 3ojv 3rhx 3tt0 4f63 4f64 4f65 4nk9 4nka 4nks 4rwi 4rwj 4rwk 4rwl 4uwb 4uwc 4uwy 4v01 4v04 4v05 4wun 4zsa 5a4c 5am6 5am7 5b7v 5ew8 5flf 5uq0 5ur1 5vnd
UniProtKB/TrEMBL
        D3DSX2_HUMAN | D3DSX2: 4v01 4v04 4v05

(-) Related Entries Specified in the PDB File

5a4c FGFR1 LIGAND COMPLEX