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(-) Description

Title :  FGFR1 IN COMPLEX WITH AZD4547.
 
Authors :  J. Tucker, T. Klein, J. Breed, A. Breeze, R. Overman, C. Phillips, R. A. N
Date :  10 Sep 14  (Deposition) - 10 Dec 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.57
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Tucker, T. Klein, J. Breed, A. L. Breeze, R. Overman, C. Phillips, R. A. Norman
Structural Insights Into Fgfr Kinase Isoform Selectivity: Diverse Binding Modes Of Azd4547 And Ponatinib In Complex With Fgfr1 And Fgfr4
Structure V. 22 1764 2014
PubMed-ID: 25465127  |  Reference-DOI: 10.1016/J.STR.2014.09.019

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 1 (FMS-RELATED TYROSINE KINASE 2, PFEIFFER SYNDROME), ISOFORM CRA_B
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE, UNP RESIDUES 22-329
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
166T2Ligand/IonN-{3-[2-(3,5-DIMETHOXYPHENYL)ETHYL]-1H-PYRAZOL-5-YL}-4-[(3R,5S)-3,5-DIMETHYLPIPERAZIN-1-YL]BENZAMIDE
2EDO5Ligand/Ion1,2-ETHANEDIOL
3SO44Ligand/IonSULFATE ION
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
166T1Ligand/IonN-{3-[2-(3,5-DIMETHOXYPHENYL)ETHYL]-1H-PYRAZOL-5-YL}-4-[(3R,5S)-3,5-DIMETHYLPIPERAZIN-1-YL]BENZAMIDE
2EDO3Ligand/Ion1,2-ETHANEDIOL
3SO43Ligand/IonSULFATE ION
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
166T1Ligand/IonN-{3-[2-(3,5-DIMETHOXYPHENYL)ETHYL]-1H-PYRAZOL-5-YL}-4-[(3R,5S)-3,5-DIMETHYLPIPERAZIN-1-YL]BENZAMIDE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3SO41Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:665 , TRP A:684 , TYR A:701 , ARG A:718 , MET A:719 , TRP A:737 , HOH A:2037BINDING SITE FOR RESIDUE EDO A1766
02AC2SOFTWARELYS B:514 , LEU B:516 , ASP B:524 , LEU B:528 , GLU B:531BINDING SITE FOR RESIDUE EDO B1765
03AC3SOFTWARETYR B:701 , ARG B:718 , MET B:719 , TRP B:737 , HOH B:2043BINDING SITE FOR RESIDUE EDO B1766
04AC4SOFTWAREALA A:615 , HIS A:679 , THR A:746 , PHE A:747 , LYS A:748BINDING SITE FOR RESIDUE EDO A1767
05AC5SOFTWARELYS A:566 , ARG A:576 , 66T A:1769BINDING SITE FOR RESIDUE EDO A1768
06AC6SOFTWARELEU A:484 , ALA A:512 , LYS A:514 , GLU A:531 , ILE A:545 , VAL A:561 , GLU A:562 , TYR A:563 , ALA A:564 , SER A:565 , GLY A:567 , GLU A:571 , LEU A:630 , ASP A:641 , EDO A:1768BINDING SITE FOR RESIDUE 66T A1769
07AC7SOFTWAREALA B:512 , LYS B:514 , MET B:535 , ILE B:545 , VAL B:559 , VAL B:561 , GLU B:562 , TYR B:563 , ALA B:564 , SER B:565 , GLY B:567 , LEU B:630 , ALA B:640 , ASP B:641 , PHE B:642 , HOH B:2063BINDING SITE FOR RESIDUE 66T B1767
08AC8SOFTWAREARG A:570 , ARG A:627 , THR A:657 , ASN A:659 , ARG A:661 , HOH A:2033 , HOH A:2035BINDING SITE FOR RESIDUE SO4 A1770
09AC9SOFTWAREARG B:570 , ARG B:627 , THR B:657 , ASN B:659 , ARG B:661 , HOH B:2039BINDING SITE FOR RESIDUE SO4 B1768
10BC1SOFTWAREGLY A:539 , LYS A:540 , LYS A:618 , HOH A:2020 , HOH A:2077BINDING SITE FOR RESIDUE SO4 A1771
11BC2SOFTWAREARG A:470 , LYS A:618 , HIS A:679 , HOH A:2004BINDING SITE FOR RESIDUE SO4 A1772

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4V05)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asp A:503 -Lys A:504
2Asn B:763 -Gln B:764

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4V05)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4V05)

(-) Exons   (0, 0)

(no "Exon" information available for 4V05)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:287
                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeee.......eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee....eehhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee..................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v05 A 464 ELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQE 765
                                   473       483       493       503       513       523       533       543       553       563       573      |594       604       614       624       634       644 ||    658       668       678       688       698       708       718       728       738       748       758       
                                                                                                                                              580|                                                   646|                                                                                                                  
                                                                                                                                               592                                                    651                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..........hhh.eeeeee.......eeeeeeee......eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee..................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v05 B 459 GVSEYELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQ 764
                                   468       478       488       498  ||   511       521       531       541       551       561       571       594       604       614       624       634       644|      658       668       678       688       698       708       718       728       738       748       758      
                                                                    501|                                                                       579|                                                644|                                                                                                                   
                                                                     505                                                                        593                                                 649
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4V05)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4V05)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4V05)

(-) Gene Ontology  (99, 108)

Asymmetric Unit(hide GO term definitions)

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  4v05
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  FGFR1_HUMAN | P11362
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        D3DSX2_HUMAN | D3DSX2: 5a46
        FGFR1_HUMAN | P11362: 1agw 1cvs 1evt 1fgi 1fgk 1fq9 1xr0 2cr3 2fgi 3c4f 3dpk 3gqi 3gql 3js2 3krj 3krl 3kxx 3ky2 3ojv 3rhx 3tt0 4f63 4f64 4f65 4nk9 4nka 4nks 4rwi 4rwj 4rwk 4rwl 4uwb 4uwc 4uwy 4v01 4v04 4wun 4zsa 5a46 5a4c 5am6 5am7 5b7v 5ew8 5flf 5uq0 5ur1 5vnd
UniProtKB/TrEMBL
        D3DSX2_HUMAN | D3DSX2: 4v01 4v04

(-) Related Entries Specified in the PDB File

4uxq FGFR4 IN COMPLEX WITH PONATINIB
4v01 FGFR1 IN COMPLEX WITH PONATINIB (CO-CRYSTALLISATION).
4v04 FGFR1 IN COMPLEX WITH PONATINIB.