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(-) Description

Title :  FIBROBLAST GROWTH FACTOR RECEPTOR 1 IN COMPLEX WITH JNJ-4275693
 
Authors :  D. Ogg, J. Breed
Date :  20 Nov 15  (Deposition) - 30 Mar 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.63
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Fgfr1 Kinase Inhibitor Complex, Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Patani, T. D. Bunney, N. Thiyagarajan, R. A. Norman, D. Ogg, J. Breed P. Ashford, A. Potterton, M. Edwards, S. V. Williams, G. S. Thomson, C. S. Pang, M. A. Knowles, A. L. Breeze, C. Orengo, C. Phillips, M. Katan
Landscape Of Activating Cancer Mutations In Fgfr Kinases An Their Differential Responses To Inhibitors In Clinical Use.
Oncotarget V. 7 24252 2016
PubMed-ID: 26992226  |  Reference-DOI: 10.18632/ONCOTARGET.8132

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 1
    Chains: A, B
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 458-765
    Gene: FGFR1, BFGFR, CEK, FGFBR, FLG, FLT2, HBGFR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-1,BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1,BFGF-R-1, FMS-LIKE TYROSINE KINASE 2,FLT-2,N-SAM,PROTO-ONCOGENE C-FGR

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
15SF2Ligand/Ion~{N}'-(3,5-DIMETHOXYPHENYL)-~{N}'-[3-(1-METHYLPYRAZOL-4-YL)QUINOXALIN-6-YL]-~{N}-PROPAN-2-YL-ETHANE-1,2-DIAMINE
2SO43Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
15SF1Ligand/Ion~{N}'-(3,5-DIMETHOXYPHENYL)-~{N}'-[3-(1-METHYLPYRAZOL-4-YL)QUINOXALIN-6-YL]-~{N}-PROPAN-2-YL-ETHANE-1,2-DIAMINE
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
15SF1Ligand/Ion~{N}'-(3,5-DIMETHOXYPHENYL)-~{N}'-[3-(1-METHYLPYRAZOL-4-YL)QUINOXALIN-6-YL]-~{N}-PROPAN-2-YL-ETHANE-1,2-DIAMINE
2SO41Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:539 , LYS A:540 , LYS A:618 , HOH A:990 , HOH A:1046 , HOH A:1062binding site for residue SO4 A 801
2AC2SOFTWAREARG A:570 , ARG A:627 , THR A:657 , ASN A:659 , ARG A:661 , HOH A:950 , HOH A:1005binding site for residue SO4 A 802
3AC3SOFTWARELEU A:484 , ALA A:512 , LYS A:514 , GLU A:531 , MET A:535 , ILE A:545 , GLU A:562 , TYR A:563 , ALA A:564 , GLY A:567 , ARG A:627 , ASN A:628 , LEU A:630 , ALA A:640 , ASP A:641 , PHE A:642 , HOH A:934 , HOH A:1042 , HOH A:1060binding site for residue 5SF A 803
4AC4SOFTWAREARG B:570 , ARG B:627 , THR B:657 , ASN B:659 , ARG B:661 , HOH B:964 , HOH B:1004binding site for residue SO4 B 801
5AC5SOFTWARELEU B:484 , ALA B:512 , LYS B:514 , GLU B:531 , MET B:535 , ILE B:545 , GLU B:562 , TYR B:563 , ALA B:564 , GLY B:567 , ARG B:627 , ASN B:628 , LEU B:630 , ALA B:640 , ASP B:641 , PHE B:642 , HOH B:1011 , HOH B:1029binding site for residue 5SF B 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EW8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asp A:503 -Lys A:504

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EW8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EW8)

(-) Exons   (0, 0)

(no "Exon" information available for 5EW8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:291
                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeeeeee...eeeeeeeee.........eeeeeeeee....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.......hhhhh..........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ew8 A 464 ELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQE 765
                                   473       483       493       503       513       523       533       543       553       563       573      |594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764 
                                                                                                                                              580|                                                                                                                                                                             
                                                                                                                                               592                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhh.eeeeeeeee...eeeeeeeee.........eeeeeeeee....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee....................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ew8 B 461 SEYELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQE 765
                                   470       480       490       500       510       520       530       540       550       560       570       593       603       613       623       633       643  ||   655       665       675       685       695       705       715       725       735       745       755       765
                                                                                                                                                579|                                                  646|                                                                                                                    
                                                                                                                                                 593                                                   649
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EW8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EW8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EW8)

(-) Gene Ontology  (99, 99)

Asymmetric Unit(hide GO term definitions)

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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGFR1_HUMAN | P11362: 1agw 1cvs 1evt 1fgi 1fgk 1fq9 1xr0 2cr3 2fgi 3c4f 3dpk 3gqi 3gql 3js2 3krj 3krl 3kxx 3ky2 3ojv 3rhx 3tt0 4f63 4f64 4f65 4nk9 4nka 4nks 4rwi 4rwj 4rwk 4rwl 4uwb 4uwc 4uwy 4v01 4v04 4v05 4wun 4zsa 5a46 5a4c 5am6 5am7 5b7v 5flf 5uq0 5ur1 5vnd

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