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(-) Description

Title :  FIBROBLAST GROWTH FACTOR RECEPTOR 1 KINASE IN COMPLEX WITH JK-P3
 
Authors :  H. Beeston, J. Tucker, J. Kankanala
Date :  11 Aug 14  (Deposition) - 02 Sep 15  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.96
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Receptor Tyrosine Kinase, Transferase Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Beeston
Validation Of Ims-Ms As A Screening Tool To Identify Type I Kinase Inhibitors Of Fgfr1 Kinase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 1
    Chains: A, B
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR
    Expression System Vector: PET28
    Fragment: KINASE DOMAIN, RESIDUES 458-765
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-1, BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1, BFGFR, B FGF-R-1, FMS-LIKE TYROSINE KINASE 2, FLT-2, N-SAM, PROTO-ONCOGENE C- FGR, FIBROBLAST GROWTH FACTOR RECEPTOR 1 KINASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 23)

Asymmetric Unit (4, 23)
No.NameCountTypeFull Name
14Y02Ligand/Ion3,4-DIMETHOXY-N-(5-PHENYL-1H-PYRAZOL-3-YL)BENZAMIDE
2EDO12Ligand/Ion1,2-ETHANEDIOL
3PPI3Ligand/IonPROPANOIC ACID
4SO46Ligand/IonSULFATE ION
Biological Unit 1 (4, 14)
No.NameCountTypeFull Name
14Y01Ligand/Ion3,4-DIMETHOXY-N-(5-PHENYL-1H-PYRAZOL-3-YL)BENZAMIDE
2EDO7Ligand/Ion1,2-ETHANEDIOL
3PPI2Ligand/IonPROPANOIC ACID
4SO44Ligand/IonSULFATE ION
Biological Unit 2 (4, 9)
No.NameCountTypeFull Name
14Y01Ligand/Ion3,4-DIMETHOXY-N-(5-PHENYL-1H-PYRAZOL-3-YL)BENZAMIDE
2EDO5Ligand/Ion1,2-ETHANEDIOL
3PPI1Ligand/IonPROPANOIC ACID
4SO42Ligand/IonSULFATE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN B:628 , ASP B:641 , EDO B:1769 , 4Y0 B:1770BINDING SITE FOR RESIDUE EDO B 1765
02AC2SOFTWAREGLU A:531 , ALA A:640 , ASP A:641 , PHE A:642 , GLY A:643 , 4Y0 A:1773 , HOH A:2021BINDING SITE FOR RESIDUE EDO A 1766
03AC3SOFTWARETRP A:684 , TYR A:701 , ARG A:718 , MET A:719 , TRP A:737 , HOH A:2091BINDING SITE FOR RESIDUE EDO A 1767
04AC4SOFTWAREGLU B:531 , ALA B:640 , ASP B:641 , PHE B:642 , GLY B:643 , 4Y0 B:1770 , HOH B:2027BINDING SITE FOR RESIDUE EDO B 1766
05AC5SOFTWARETRP B:684 , TYR B:701 , ARG B:718 , MET B:719 , TRP B:737 , HOH B:2116BINDING SITE FOR RESIDUE EDO B 1767
06AC6SOFTWAREPRO B:466 , ILE B:529 , GLU B:533 , THR B:552 , HOH B:2044BINDING SITE FOR RESIDUE EDO B 1768
07AC7SOFTWAREALA A:615 , THR A:746 , PHE A:747 , LYS A:748 , HOH A:2164 , HOH A:2165BINDING SITE FOR RESIDUE EDO A 1768
08AC8SOFTWAREARG A:470 , TRP A:471 , SO4 A:1777 , SO4 A:1779BINDING SITE FOR RESIDUE EDO A 1769
09AC9SOFTWAREASN B:568 , ARG B:627 , EDO B:1765 , 4Y0 B:1770BINDING SITE FOR RESIDUE EDO B 1769
10BC1SOFTWARELYS A:714BINDING SITE FOR RESIDUE EDO A 1770
11BC2SOFTWARETYR A:572 , LEU A:595 , ASP A:599 , GLN A:606 , ASN A:635BINDING SITE FOR RESIDUE EDO A 1771
12BC3SOFTWARELYS A:665 , GLY A:703 , VAL A:704 , HOH A:2108BINDING SITE FOR RESIDUE EDO A 1772
13BC4SOFTWARELEU A:484 , ILE A:545 , VAL A:561 , GLU A:562 , TYR A:563 , ALA A:564 , SER A:565 , GLY A:567 , GLU A:571 , LEU A:630 , EDO A:1766 , PPI A:1775BINDING SITE FOR RESIDUE 4Y0 A 1773
14BC5SOFTWAREVAL B:492 , VAL B:561 , GLU B:562 , TYR B:563 , ALA B:564 , SER B:565 , GLY B:567 , GLU B:571 , LEU B:630 , EDO B:1765 , EDO B:1766 , EDO B:1769BINDING SITE FOR RESIDUE 4Y0 B 1770
15BC6SOFTWAREARG A:577 , GLY A:698 , SER A:699 , HIS B:717BINDING SITE FOR RESIDUE PPI A 1774
16BC7SOFTWARESER B:597 , PHE B:694 , ASN B:724 , CYS B:725 , THR B:726 , LEU B:729BINDING SITE FOR RESIDUE PPI B 1771
17BC8SOFTWARELYS A:566 , TYR A:572 , ARG A:576 , 4Y0 A:1773BINDING SITE FOR RESIDUE PPI A 1775
18BC9SOFTWAREARG A:570 , ARG A:627 , THR A:657 , ASN A:659 , ARG A:661 , HOH A:2076 , HOH A:2166BINDING SITE FOR RESIDUE SO4 A 1776
19CC1SOFTWAREARG B:570 , ARG B:627 , THR B:657 , ASN B:659 , ARG B:661 , HOH B:2095BINDING SITE FOR RESIDUE SO4 B 1772
20CC2SOFTWAREARG A:470 , TRP A:471 , GLU A:472 , LEU A:500 , LEU A:548 , GLY A:549 , EDO A:1769BINDING SITE FOR RESIDUE SO4 A 1777
21CC3SOFTWAREGLY A:539 , LYS A:540 , LYS A:618 , HOH A:2031 , HOH A:2167 , HOH A:2168BINDING SITE FOR RESIDUE SO4 A 1778
22CC4SOFTWARESER A:584 , TYR A:585 , ARG B:734BINDING SITE FOR RESIDUE SO4 B 1773
23CC5SOFTWAREARG A:470 , LYS A:618 , HIS A:679 , EDO A:1769 , HOH A:2004BINDING SITE FOR RESIDUE SO4 A 1779

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UWC)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Asp A:503 -Lys A:504
2Ile A:648 -His A:649
3His A:650 -Ile A:651
4Ile B:648 -His B:649
5His B:650 -Ile B:651

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UWC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UWC)

(-) Exons   (0, 0)

(no "Exon" information available for 4UWC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:301
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.eeeeee.......eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee......................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uwc A 465 LPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQE 765
                                   474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764 


Chain B from PDB  Type:PROTEIN  Length:301
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..........hhh.eeeeeeeee...eeeeeeeee.......eeeeeeeee....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee......................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uwc B 459 GVSEYELPEDPRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQ 764
                                   468       478       488       498  ||   510       520       530       540       550       560       570       580    || 593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763 
                                                                    501|                                                                              585|                                                                                                                                                                               
                                                                     504                                                                               589
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UWC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UWC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UWC)

(-) Gene Ontology  (99, 99)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        FGFR1_HUMAN | P11362: 1agw 1cvs 1evt 1fgi 1fgk 1fq9 1xr0 2cr3 2fgi 3c4f 3dpk 3gqi 3gql 3js2 3krj 3krl 3kxx 3ky2 3ojv 3rhx 3tt0 4f63 4f64 4f65 4nk9 4nka 4nks 4rwi 4rwj 4rwk 4rwl 4uwb 4uwy 4v01 4v04 4v05 4wun 4zsa 5a46 5a4c 5am6 5am7 5b7v 5ew8 5flf 5uq0 5ur1 5vnd

(-) Related Entries Specified in the PDB File

4uwb FIBROBLAST GROWTH FACTOR RECEPTOR 1 KINASE IN COMPLEX WITH JK-P5