PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
5FLF
Asym. Unit
Info
Asym.Unit (246 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (54 KB)
Biol.Unit 3 (51 KB)
Biol.Unit 4 (53 KB)
Biol.Unit 5 (46 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
DISEASE LINKED MUTATION IN FGFR
Authors
:
N. Thiyagarajan, T. D. Bunney, M. Katan
Date
:
26 Oct 15 (Deposition) - 30 Mar 16 (Release) - 10 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.58
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Keywords
:
Transferase, Auto-Activating, Cancer, Growth Factor, Receptor, Mutation;
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Patani, T. D. Bunney, N. Thiyagarajan, R. A. Norman, D. Ogg, J. Breed P. Ashford, A. Potterton, M. Edwards, S. V. Williams, G. S. Thomson, C. S. Pang, M. A. Knowles, A. L. Breeze, C. Orengo, C. Phillips, M. Katan
Landscape Of Activating Cancer Mutations In Fgfr Kinases And Their Differential Responses To Inhibitors In Clinical Use.
Oncotarget V. 7 24252 2016
[
close entry info
]
Hetero Components
(4, 19)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: TRIETHYLENE GLYCOL (PGEa)
3b: TRIETHYLENE GLYCOL (PGEb)
3c: TRIETHYLENE GLYCOL (PGEc)
3d: TRIETHYLENE GLYCOL (PGEd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CL
5
Ligand/Ion
CHLORIDE ION
3
PGE
4
Ligand/Ion
TRIETHYLENE GLYCOL
4
SO4
9
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR D:726 , ASN D:727 , GLU D:728 , HOH D:2085 , LYS E:617
BINDING SITE FOR RESIDUE SO4 E1762
02
AC2
SOFTWARE
THR B:726 , ASN B:727 , ARG D:577 , GLY D:698 , SER D:699 , HOH D:2088
BINDING SITE FOR RESIDUE SO4 D1764
03
AC3
SOFTWARE
ARG D:570
BINDING SITE FOR RESIDUE SO4 D1765
04
AC4
SOFTWARE
ARG A:622 , ARG A:646 , TYR A:654 , ARG A:661
BINDING SITE FOR RESIDUE SO4 A1763
05
AC5
SOFTWARE
ARG C:622 , ARG C:646 , TYR C:654 , LYS C:656 , THR C:657 , ARG C:661
BINDING SITE FOR RESIDUE SO4 C1764
06
AC6
SOFTWARE
ARG B:622 , ARG B:646 , TYR B:654 , LYS B:656 , ARG B:661 , HOH B:2048
BINDING SITE FOR RESIDUE SO4 B1765
07
AC7
SOFTWARE
LYS D:523 , ARG D:622 , LEU D:644 , ARG D:646 , TYR D:654 , LYS D:656
BINDING SITE FOR RESIDUE SO4 D1766
08
AC8
SOFTWARE
ASP D:735 , HIS D:738 , GLN D:743 , LYS E:542 , TYR E:605
BINDING SITE FOR RESIDUE SO4 D1767
09
AC9
SOFTWARE
LYS D:566 , ARG D:576
BINDING SITE FOR RESIDUE SO4 D1768
10
BC1
SOFTWARE
ALA C:615 , HIS C:679 , GLN C:680 , VAL C:683 , PRO C:741 , ARG C:744 , PRO C:745 , THR C:746 , PHE C:747 , LYS C:748
BINDING SITE FOR RESIDUE PGE C1765
11
BC2
SOFTWARE
HIS B:649 , SER D:530
BINDING SITE FOR RESIDUE PGE D1769
12
BC3
SOFTWARE
THR D:746 , PHE D:747 , LYS D:748 , GLN D:749 , CL D:1772 , HOH D:2045
BINDING SITE FOR RESIDUE PGE D1770
13
BC4
SOFTWARE
ARG D:470 , TRP D:471 , GLU D:472 , LEU D:500
BINDING SITE FOR RESIDUE PGE D1771
14
BC5
SOFTWARE
PHE B:747
BINDING SITE FOR RESIDUE CL B1766
15
BC6
SOFTWARE
PHE D:747 , PGE D:1770
BINDING SITE FOR RESIDUE CL D1772
16
BC7
SOFTWARE
LYS D:514
BINDING SITE FOR RESIDUE CL D1773
17
BC8
SOFTWARE
TYR D:701 , HIS D:717
BINDING SITE FOR RESIDUE CL D1774
18
BC9
SOFTWARE
THR A:726 , ASN A:727
BINDING SITE FOR RESIDUE ACT A1764
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (246 KB)
Header - Asym.Unit
Biol.Unit 1 (53 KB)
Header - Biol.Unit 1
Biol.Unit 2 (54 KB)
Header - Biol.Unit 2
Biol.Unit 3 (51 KB)
Header - Biol.Unit 3
Biol.Unit 4 (53 KB)
Header - Biol.Unit 4
Biol.Unit 5 (46 KB)
Header - Biol.Unit 5
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5FLF
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help