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(-) Description

Title :  MODEL OF THE YEAST F1FO-ATP SYNTHASE DIMER BASED ON SUBTOMOGRAM AVERAGE
 
Authors :  K. M. Davies, W. Kuehlbrandt
Date :  17 Jul 12  (Deposition) - 29 Aug 12  (Release) - 24 Jul 13  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  37.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w
Keywords :  Hydrolase, Subtomogram Average (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. M. Davies, C. Anselmi, I. Wittig, J. D. Faraldo-Gomez, W. Kuhlbrandt
Structure Of The Yeast F1Fo-Atp Synthase Dimer And Its Role In Shaping The Mitochondrial Cristae.
Proc. Natl. Acad. Sci. Usa V. 109 13602 2012
PubMed-ID: 22864911  |  Reference-DOI: 10.1073/PNAS.1204593109

(-) Compounds

Molecule 1 - ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL
    ChainsA, C, a, c
    FragmentRESIDUES 61-545
    OrganMITOCHONDRIA
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainD273-10B/A
 
Molecule 2 - ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL
    ChainsB, b
    FragmentRESIDUES 60-545
    OrganMITOCHONDRIA
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainD273-10B/A
 
Molecule 3 - ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL
    ChainsD, d
    EC Number3.6.3.14
    FragmentRESIDUES 39-508
    OrganMITOCHONDRIA
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainD273-10B/A
 
Molecule 4 - ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL
    ChainsE, F, e, f
    EC Number3.6.3.14
    FragmentRESIDUES 39-511
    OrganMITOCHONDRIA
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainD273-10B/A
 
Molecule 5 - ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL
    ChainsG, g
    FragmentRESIDUES 34-311
    OrganMITOCHONDRIA
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainD273-10B/A
    SynonymF-ATPASE GAMMA SUBUNIT
 
Molecule 6 - ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL
    ChainsH, h
    FragmentRESIDUES 29-160
    OrganMITOCHONDRIA
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainD273-10B/A
    SynonymF-ATPASE DELTA SUBUNIT
 
Molecule 7 - ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL
    ChainsI, i
    FragmentRESIDUES 2-60
    OrganMITOCHONDRIA
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainD273-10B/A
    SynonymATPASE SUBUNIT EPSILON
 
Molecule 8 - ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL
    ChainsJ, K, L, M, N, O, P, Q, R, S, j, k, l, m, n, o, p, q, r, s
    OrganMITOCHONDRIA
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    StrainD273-10B/A
    SynonymLIPID-BINDING PROTEIN, OLIGOMYCIN RESISTANCE PROTEIN 1
 
Molecule 9 - ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL
    ChainsT, t
    EC Number3.6.3.14
    FragmentRESIDUES 121-249
    OrganMITOCHONDRIA
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymATPASE SUBUNIT B
 
Molecule 10 - ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL
    ChainsU, u
    FragmentRESIDUES 5-124
    OrganMITOCHONDRIA
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymATPASE SUBUNIT D
 
Molecule 11 - ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL
    ChainsV, v
    FragmentRESIDUES 36-101
    OrganMITOCHONDRIA
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymATPASE SUBUNIT F6
 
Molecule 12 - ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL
    ChainsW, w
    EC Number3.6.3.14
    FragmentRESIDUES 24-143
    OrganMITOCHONDRIA
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymOLIGOMYCIN SENSITIVITY CONFERRAL PROTEIN, OSCP

 Structural Features

(-) Chains, Units

  12345678910111213141516171819202122232425262728293031323334353637383940414243444546
Asymmetric/Biological Unit ABCDEFGHIJKLMNOPQRSTUVWabcdefghijklmnopqrstuvw

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric/Biological Unit (3, 20)
No.NameCountTypeFull Name
1ADP4Ligand/IonADENOSINE-5'-DIPHOSPHATE
2ATP6Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3MG10Ligand/IonMAGNESIUM ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:174 , THR A:175 , GLY A:176 , LYS A:177 , THR A:178 , ALA A:179 , GLU A:330 , GLN A:432 , GLN A:434 , MG A:1512 , SER D:355BINDING SITE FOR RESIDUE ATP A1511
02AC2SOFTWARETHR A:178 , ASP A:271 , ATP A:1511BINDING SITE FOR RESIDUE MG A1512
03AC3SOFTWAREGLN B:174 , THR B:175 , GLY B:176 , LYS B:177 , THR B:178 , ALA B:179 , ARG B:364 , GLN B:432 , GLN B:434 , MG B:1511BINDING SITE FOR RESIDUE ATP B1510
04AC4SOFTWARELYS B:177 , THR B:178 , ASP B:271 , ATP B:1510BINDING SITE FOR RESIDUE MG B1511
05AC5SOFTWAREGLN C:174 , GLY C:176 , LYS C:177 , THR C:178 , ALA C:179 , ARG C:364 , GLN C:432 , GLN C:434 , MG C:1512 , SER F:355 , TYR F:368BINDING SITE FOR RESIDUE ATP C1511
06AC6SOFTWARETHR C:178 , ASP C:271 , ATP C:1511BINDING SITE FOR RESIDUE MG C1512
07AC7SOFTWAREARG C:375 , GLY D:158 , ALA D:159 , GLY D:160 , VAL D:161 , GLY D:162 , LYS D:163 , THR D:164 , VAL D:165 , TYR D:345 , PHE D:418 , MG D:1477BINDING SITE FOR RESIDUE ADP D1476
08AC8SOFTWARETHR D:164 , GLU D:189 , ADP D:1476BINDING SITE FOR RESIDUE MG D1477
09AC9SOFTWAREVAL B:373 , SER B:374 , ARG B:375 , GLY F:160 , GLY F:162 , LYS F:163 , THR F:164 , VAL F:165 , TYR F:345 , PHE F:418 , MG F:1480BINDING SITE FOR RESIDUE ADP F1479
10BC1SOFTWARETHR F:164 , GLU F:189 , ASP F:256 , ADP F:1479BINDING SITE FOR RESIDUE MG F1480
11BC2SOFTWAREGLN a:174 , THR a:175 , GLY a:176 , LYS a:177 , THR a:178 , ALA a:179 , GLU a:330 , GLN a:432 , GLN a:434 , MG a:1512 , SER d:355BINDING SITE FOR RESIDUE ATP a1511
12BC3SOFTWARETHR a:178 , ASP a:271 , ATP a:1511BINDING SITE FOR RESIDUE MG a1512
13BC4SOFTWAREGLN b:174 , THR b:175 , GLY b:176 , LYS b:177 , THR b:178 , ALA b:179 , ARG b:364 , GLN b:432 , GLN b:434 , MG b:1511BINDING SITE FOR RESIDUE ATP b1510
14BC5SOFTWARELYS b:177 , THR b:178 , ASP b:271 , ATP b:1510BINDING SITE FOR RESIDUE MG b1511
15BC6SOFTWAREGLN c:174 , GLY c:176 , LYS c:177 , THR c:178 , ALA c:179 , ARG c:364 , GLN c:432 , GLN c:434 , MG c:1512 , SER f:355 , TYR f:368BINDING SITE FOR RESIDUE ATP c1511
16BC7SOFTWARETHR c:178 , ASP c:271 , ATP c:1511BINDING SITE FOR RESIDUE MG c1512
17BC8SOFTWAREARG c:375 , GLY d:158 , ALA d:159 , GLY d:160 , VAL d:161 , GLY d:162 , LYS d:163 , THR d:164 , VAL d:165 , TYR d:345 , PHE d:418 , MG d:1477BINDING SITE FOR RESIDUE ADP d1476
18BC9SOFTWARETHR d:164 , GLU d:189 , ADP d:1476BINDING SITE FOR RESIDUE MG d1477
19CC1SOFTWAREVAL b:373 , SER b:374 , ARG b:375 , GLY f:160 , GLY f:162 , LYS f:163 , THR f:164 , VAL f:165 , TYR f:345 , PHE f:418 , MG f:1480BINDING SITE FOR RESIDUE ADP f1479
20CC2SOFTWARETHR f:164 , GLU f:189 , ASP f:256 , ADP f:1479BINDING SITE FOR RESIDUE MG f1480

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4B2Q)

(-) Cis Peptide Bonds  (24, 24)

Asymmetric/Biological Unit
No.Residues
1Asp A:271 -Asp A:272
2Arg A:364 -Pro A:365
3Asp B:271 -Asp B:272
4Arg B:364 -Pro B:365
5Asp C:271 -Asp C:272
6Arg C:364 -Pro C:365
7Asp D:256 -Asn D:257
8Tyr D:345 -Pro D:346
9Asp E:256 -Asn E:257
10Tyr E:345 -Pro E:346
11Asp F:256 -Asn F:257
12Tyr F:345 -Pro F:346
13Asp a:271 -Asp a:272
14Arg a:364 -Pro a:365
15Asp b:271 -Asp b:272
16Arg b:364 -Pro b:365
17Asp c:271 -Asp c:272
18Arg c:364 -Pro c:365
19Asp d:256 -Asn d:257
20Tyr d:345 -Pro d:346
21Asp e:256 -Asn e:257
22Tyr e:345 -Pro e:346
23Asp f:256 -Asn f:257
24Tyr f:345 -Pro f:346

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (6, 84)

Asymmetric/Biological Unit (6, 84)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_ATP9_YEAST_001 *T46LATP9_YEAST  ---  ---J/K/L/M/N/O/P/Q/R/S/j/k/l/m/n/o/p/q/r/sT46L
2UniProtVAR_ATP9_YEAST_002 *L53FATP9_YEAST  ---  ---J/K/L/M/N/O/P/Q/R/S/j/k/l/m/n/o/p/q/r/sL53F
3UniProtVAR_ATP9_YEAST_003 *L57VATP9_YEAST  ---  ---J/K/L/M/N/O/P/Q/R/S/j/k/l/m/n/o/p/q/r/sL57V
4UniProtVAR_ATP9_YEAST_004 *C65SATP9_YEAST  ---  ---J/K/L/M/N/O/P/Q/R/S/j/k/l/m/n/o/p/q/r/sC65S
5UniProtVAR_ATPG_YEAST_001 *S207IATPG_YEAST  ---  ---G/gS174I
6UniProtVAR_ATPG_YEAST_002 *S308FATPG_YEAST  ---  ---G/gS275F
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 34)

Asymmetric/Biological Unit (3, 34)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ATPASE_CPS00605 ATP synthase c subunit signature.ATP9_YEAST38-59
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  20J:38-59
K:38-59
L:38-59
M:38-59
N:38-59
O:38-59
P:38-59
Q:38-59
R:38-59
S:38-59
j:38-59
k:38-59
l:38-59
m:38-59
n:38-59
o:38-59
p:38-59
q:38-59
r:38-59
s:38-59
2ATPASE_GAMMAPS00153 ATP synthase gamma subunit signature.ATPG_YEAST296-309
 
  2G:263-276
g:263-276
3ATPASE_ALPHA_BETAPS00152 ATP synthase alpha and beta subunits signature.ATPB_YEAST379-388
 
 
 
 
 
  6D:346-355
E:346-355
F:346-355
d:346-355
e:346-355
f:346-355
ATPA_YEAST400-409
 
 
 
 
 
  6A:365-374
B:365-374
C:365-374
a:365-374
b:365-374
c:365-374

(-) Exons   (20, 48)

Asymmetric/Biological Unit (20, 48)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000084471ENSBTAE00000366545chr3:34439903-3443982876AT5F1_BOVIN1-14140--
1.2ENSBTAT000000084472ENSBTAE00000387804chr3:34439648-3443961237AT5F1_BOVIN14-26130--
1.3ENSBTAT000000084473ENSBTAE00000428584chr3:34433047-34432902146AT5F1_BOVIN26-75500--
1.4ENSBTAT000000084474ENSBTAE00000068331chr3:34429919-34429756164AT5F1_BOVIN75-129552T:79-87
t:79-87
9
9
1.5ENSBTAT000000084475ENSBTAE00000068333chr3:34429411-34429286126AT5F1_BOVIN130-171422T:88-129
t:88-129
42
42
1.6ENSBTAT000000084476ENSBTAE00000068340chr3:34425878-34425699180AT5F1_BOVIN172-231602T:130-189
t:130-189
60
60
1.7ENSBTAT000000084477ENSBTAE00000068343chr3:34423268-34422853416AT5F1_BOVIN232-256252T:190-207
t:190-207
18
18

2.1ENSBTAT000000243261ENSBTAE00000197898chr1:720699-72076466ATPO_BOVIN1-12120--
2.2ENSBTAT000000243262ENSBTAE00000401349chr1:722101-72215151ATPO_BOVIN13-29170--
2.3ENSBTAT000000243263ENSBTAE00000197900chr1:723098-723208111ATPO_BOVIN30-66372W:11-43
w:11-43
33
33
2.4ENSBTAT000000243264ENSBTAE00000197901chr1:725362-725491130ATPO_BOVIN67-110442W:44-87
w:44-87
44
44
2.5ENSBTAT000000243265ENSBTAE00000197902chr1:726174-726286113ATPO_BOVIN110-147382W:87-120
w:87-120
34
34
2.6ENSBTAT000000243266ENSBTAE00000398411chr1:727512-72759887ATPO_BOVIN148-176290--
2.7ENSBTAT000000243267ENSBTAE00000197904chr1:727876-728057182ATPO_BOVIN177-213370--

3.1ENSBTAT000000282821ENSBTAE00000295799chr19:58014852-5801490150ATP5H_BOVIN-00--
3.2ENSBTAT000000282822ENSBTAE00000231040chr19:58016320-58016449130ATP5H_BOVIN1-41412U:4-40
u:4-40
37
37
3.3ENSBTAT000000282823ENSBTAE00000231042chr19:58016723-5801681997ATP5H_BOVIN41-73332U:40-72
u:40-72
33
33
3.4ENSBTAT000000282824ENSBTAE00000231043chr19:58018243-5801831472ATP5H_BOVIN74-97242U:73-96
u:73-96
24
24
3.5ENSBTAT000000282825ENSBTAE00000231044chr19:58019205-5801926763ATP5H_BOVIN98-118212U:97-117
u:97-117
21
21
3.6ENSBTAT000000282826ENSBTAE00000231046chr19:58019418-58019617200ATP5H_BOVIN119-161432U:118-123
u:118-123
6
6

4.1ENSBTAT000000324271ENSBTAE00000259413chr1:10042456-1004249944ATP5J_BOVIN-00--
4.2ENSBTAT000000324272ENSBTAE00000006048chr1:10045981-10046151171ATP5J_BOVIN1-55552V:5-24 (gaps)
v:5-24 (gaps)
20
20
4.3ENSBTAT000000324273ENSBTAE00000006056chr1:10048867-10048991125ATP5J_BOVIN55-97432V:24-66
v:24-66
43
43
4.4ENSBTAT000000324274ENSBTAE00000006057chr1:10049596-10049771176ATP5J_BOVIN97-108122V:66-70
v:66-70
5
5

5.1YBL099W1YBL099W.1II:37050-386871638ATPA_YEAST1-5455456A:26-510
B:25-509
C:26-510
a:26-510
b:25-509
c:26-510
485
485
485
485
485
485

6.1YBR039W1YBR039W.1II:315575-316510936ATPG_YEAST1-3113112G:1-278 (gaps)
g:1-278 (gaps)
278
278

7.1YDL004W1YDL004W.1IV:443027-443509483ATPD_YEAST1-1601602H:7-138
h:7-138
132
132

8.1YJR121W1YJR121W.1X:647597-6491321536ATPB_YEAST1-5115116D:6-475
E:6-478
F:7-478
d:6-475
e:6-478
f:7-478
470
473
472
470
473
472

9.1YPL271W1YPL271W.1XVI:30079-30267189ATP5E_YEAST1-62622I:1-59
i:1-59
59
59

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:485
 aligned with ATPA_YEAST | P07251 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:485
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540     
           ATPA_YEAST    61 NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 545
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee...............eeeee....eeeeeee....................eeeeeeee.eeee.......eee...............eeee.....................hhhhhh...........ee.....hhhhhhhhhhhh..............eeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhh............eeeeeeee........hhhhhhhhhhh.ee...hhhhhhhh..........ee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 5 Exon 5.1  PDB: A:26-510 UniProt: 1-545 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                   Transcript 5
                 4b2q A  26 NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505     

Chain B from PDB  Type:PROTEIN  Length:485
 aligned with ATPA_YEAST | P07251 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:485
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539     
           ATPA_YEAST    60 ANLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVAT 544
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee...............eeeee....eeeeeeee..........hhhhh....eeeeeeee.eeeehhhhh..ee................eeee.......................hhhhhh.........eee.....hhhhhhhhhhhhhhhhh........eeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhh............eeee..eee.......hhhhhhhhh........hhhhhhh...............hhhhhhhhhhhhh.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP--------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 5 Exon 5.1  PDB: B:25-509 UniProt: 1-545 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                   Transcript 5
                 4b2q B  25 ANLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVAT 509
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504     

Chain C from PDB  Type:PROTEIN  Length:485
 aligned with ATPA_YEAST | P07251 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:485
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540     
           ATPA_YEAST    61 NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 545
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee...............eeeee....eeeeeee....................eeeeeeee.eeeehhhhh..eee...............eeee.....................hhhhhhh..........eee....hhhhhhhhhhhhhhhhhh........eeeeeee..hhhhhhhhhhhhhhh.....eeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh...........hhhhhhhhhhh............eeee..eee.......hhhhhhhhh...ee...hhhhhhhh..........ee.hhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 5 Exon 5.1  PDB: C:26-510 UniProt: 1-545 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                   Transcript 5
                 4b2q C  26 NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505     

Chain D from PDB  Type:PROTEIN  Length:470
 aligned with ATPB_YEAST | P00830 from UniProtKB/Swiss-Prot  Length:511

    Alignment length:470
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508
           ATPB_YEAST    39 STPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAA 508
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..eeeee...........eee.........eeeeeeee..eeeee............eeee.....eee.hhhhh..ee.................eee................ee...hhhhhhh..ee...eeee......hhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhh.........eeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhh......hhhhh...hhhhhhhhhh.........eeeeee..hhhhh..hhhhhhhhhhh.ee...hhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh......hhhhhh......hhhhhhhhhhhhhh......hhhhh....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 8 Exon 8.1  PDB: D:6-475 UniProt: 1-511 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                     Transcript 8
                 4b2q D   6 STPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAA 475
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475

Chain E from PDB  Type:PROTEIN  Length:473
 aligned with ATPB_YEAST | P00830 from UniProtKB/Swiss-Prot  Length:511

    Alignment length:473
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508   
           ATPB_YEAST    39 STPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAEAN 511
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..eeeeee..........eeeee....eeeeeeeeeee..eeeeee...........eeee.....eeee.........................eeee................ee...hhhhhh...ee...eeeee.....hhhhhhhhhhhhhhhhh...eeeeeeeehhhhhhhhhhhhhhhh.........eeeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhh........eeeeeee..hhhhh..hhhhhhhhh.eeeeee.hhhhhhh...........ee...hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhh......hhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP--------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 8 Exon 8.1  PDB: E:6-478 UniProt: 1-511 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                        Transcript 8
                 4b2q E   6 STPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAEAN 478
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475   

Chain F from PDB  Type:PROTEIN  Length:472
 aligned with ATPB_YEAST | P00830 from UniProtKB/Swiss-Prot  Length:511

    Alignment length:472
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509  
           ATPB_YEAST    40 TPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAEAN 511
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..eeeeee.........eeeeee....eeeeeeeeeee..eeeeee...........eeeeeeee.eeeehhhhh..eee...............eeee......hhhh......ee...hhhhhh...ee...eeee......hhhhhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhh..........eeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh.......hhhhh..hhhhhhhhhhhhh.......eeeeee..hhhhh..hhhhhhhhhhh.ee...hhhhhh............ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.....hhhhhh......hhhhhhhhhhhhhh......hhhhhh...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP--------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 8 Exon 8.1  PDB: F:7-478 UniProt: 1-511 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                       Transcript 8
                 4b2q F   7 TPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAEAN 478
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476  

Chain G from PDB  Type:PROTEIN  Length:269
 aligned with ATPG_YEAST | P38077 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:278
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303        
           ATPG_YEAST    34 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSLG 311
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......---------..eeee.............hhhhhhhhhhhhh........hhhhhhhhh........eeee.......hhhhhhhhhhhhhhh........eeeeeeeeee..eeeeeeeee.hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------I----------------------------------------------------------------------------------------------------F--- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_GAMMA  -- PROSITE
               Transcript 6 Exon 6.1  PDB: G:1-278 (gaps) UniProt: 1-311 [INCOMPLETE]                                                                                                                                                                                                                              Transcript 6
                 4b2q G   1 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLD---------KELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSLG 278
                                    10        20        30        40        50        60|        -|       80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270        
                                                                                       61        71                                                                                                                                                                                                               

Chain H from PDB  Type:PROTEIN  Length:132
 aligned with ATPD_YEAST | Q12165 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:132
                                    38        48        58        68        78        88        98       108       118       128       138       148       158  
           ATPD_YEAST    29 SSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQSVLK 160
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee.........eee.eeeee....eeee.......eeee...eeeee.....eeeee..eeeeee...eeeee...ee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 7 Exon 7.1  PDB: H:7-138 UniProt: 1-160 [INCOMPLETE]                                                                                   Transcript 7
                 4b2q H   7 SSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQSVLK 138
                                    16        26        36        46        56        66        76        86        96       106       116       126       136  

Chain I from PDB  Type:PROTEIN  Length:59
 aligned with ATP5E_YEAST | P21306 from UniProtKB/Swiss-Prot  Length:62

    Alignment length:59
                                    11        21        31        41        51         
          ATP5E_YEAST     2 SAWRKAGISYAAYLNVAAQAIRSSLKTELQTASVLNRSQTDAFYTQYKNGTAASEPTPI  60
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhh.......hhhhhh......eeee..........ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
               Transcript 9 Exon 9.1  PDB: I:1-59 UniProt: 1-62 [INCOMPLETE]            Transcript 9
                 4b2q I   1 SAWRKAGISYAAYLNVAAQAIRSSLKTELQTASVLNRSQTDAFYTQYKNGTAASEPTPI  59
                                    10        20        30        40        50         

Chain J from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: J:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q J   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain K from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: K:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q K   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain L from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: L:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q L   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain M from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: M:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q M   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain N from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: N:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q N   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain O from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: O:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q O   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain P from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: P:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q P   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain Q from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: Q:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q Q   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain R from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: R:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q R   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain S from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: S:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q S   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain T from PDB  Type:PROTEIN  Length:129
 aligned with AT5F1_BOVIN | P13619 from UniProtKB/Swiss-Prot  Length:256

    Alignment length:129
                                   130       140       150       160       170       180       190       200       210       220       230       240         
          AT5F1_BOVIN   121 GEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCIADLKLLSKK 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.4 Exon 1.5  PDB: T:88-129 UniProt: 130-171  Exon 1.6  PDB: T:130-189 UniProt: 172-231                   Exon 1.7           Transcript 1
                 4b2q T  79 GEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCIADLKLLSKK 207
                                    88        98       108       118       128       138       148       158       168       178       188       198         

Chain U from PDB  Type:PROTEIN  Length:120
 aligned with ATP5H_BOVIN | P13620 from UniProtKB/Swiss-Prot  Length:161

    Alignment length:120
                                    14        24        34        44        54        64        74        84        94       104       114       124
          ATP5H_BOVIN     5 KLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRN 124
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh....hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 3 (1) Exon 3.2  PDB: U:4-40 UniProt: 1-41  --------------------------------Exon 3.4  PDB: U:73-96  Exon 3.5             3.6    Transcript 3 (1)
           Transcript 3 (2) ------------------------------------Exon 3.3  PDB: U:40-72           --------------------------------------------------- Transcript 3 (2)
                 4b2q U   4 KLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRN 123
                                    13        23        33        43        53        63        73        83        93       103       113       123

Chain V from PDB  Type:PROTEIN  Length:65
 aligned with ATP5J_BOVIN | P02721 from UniProtKB/Swiss-Prot  Length:108

    Alignment length:66
                                    45        55        65        75        85        95      
          ATP5J_BOVIN    36 LDPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGKADMNTFPNFTFEDPKFE 101
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......-hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
           Transcript 4 (1) Exon 4.2            -----------------------------------------4.4   Transcript 4 (1)
           Transcript 4 (2) -------------------Exon 4.3  PDB: V:24-66 UniProt: 55-97      ---- Transcript 4 (2)
                 4b2q V   5 LDPVQK-FVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGKADMNTFPNFTFEDPKFE  70
                                 | |14        24        34        44        54        64      
                                10 |                                                          
                                  12                                                          

Chain W from PDB  Type:PROTEIN  Length:110
 aligned with ATPO_BOVIN | P13621 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:110
                                    43        53        63        73        83        93       103       113       123       133       143
           ATPO_BOVIN    34 IYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTV 143
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.........hhhhhhh.......hhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.3  PDB: W:11-43           Exon 2.4  PDB: W:44-87 UniProt: 67-110      --------------------------------- Transcript 2 (1)
           Transcript 2 (2) ----------------------------------------------------------------------------Exon 2.5  PDB: W:87-120            Transcript 2 (2)
                 4b2q W  11 IYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTV 120
                                    20        30        40        50        60        70        80        90       100       110       120

Chain a from PDB  Type:PROTEIN  Length:485
 aligned with ATPA_YEAST | P07251 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:485
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540     
           ATPA_YEAST    61 NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 545
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee...............eeeee....eeeeeee....................eeeeeeee.eeee.......eee...............eeee.....................hhhhhh...........ee.....hhhhhhhhhhhh..............eeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhh............eeeeeeee........hhhhhhhhhhh.ee...hhhhhhhh..........ee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 5 Exon 5.1  PDB: a:26-510 UniProt: 1-545 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                   Transcript 5
                 4b2q a  26 NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505     

Chain b from PDB  Type:PROTEIN  Length:485
 aligned with ATPA_YEAST | P07251 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:485
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539     
           ATPA_YEAST    60 ANLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVAT 544
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee...............eeeee....eeeeeeee..........hhhhh....eeeeeeee.eeeehhhhh..ee................eeee.......................hhhhhh.........eee.....hhhhhhhhhhhhhhhhh........eeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhh............eeee..eee.......hhhhhhhhh........hhhhhhh...............hhhhhhhhhhhhh.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP--------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 5 Exon 5.1  PDB: b:25-509 UniProt: 1-545 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                   Transcript 5
                 4b2q b  25 ANLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVAT 509
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504     

Chain c from PDB  Type:PROTEIN  Length:485
 aligned with ATPA_YEAST | P07251 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:485
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540     
           ATPA_YEAST    61 NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 545
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee...............eeeee....eeeeeee....................eeeeeeee.eeeehhhhh..eee...............eeee.....................hhhhhhh..........eee....hhhhhhhhhhhhhhhhhh........eeeeeee..hhhhhhhhhhhhhhh.....eeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh...........hhhhhhhhhhh............eeee..eee.......hhhhhhhhh...ee...hhhhhhhh..........ee.hhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 5 Exon 5.1  PDB: c:26-510 UniProt: 1-545 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                   Transcript 5
                 4b2q c  26 NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505     

Chain d from PDB  Type:PROTEIN  Length:470
 aligned with ATPB_YEAST | P00830 from UniProtKB/Swiss-Prot  Length:511

    Alignment length:470
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508
           ATPB_YEAST    39 STPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAA 508
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..eeeee...........eee.........eeeeeeee..eeeee............eeee.....eee.hhhhh..ee.................eee................ee...hhhhhhh..ee...eeee......hhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhh.........eeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhh......hhhhh...hhhhhhhhhh.........eeeeee..hhhhh..hhhhhhhhhhh.ee...hhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh......hhhhhh......hhhhhhhhhhhhhh......hhhhh....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 8 Exon 8.1  PDB: d:6-475 UniProt: 1-511 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                     Transcript 8
                 4b2q d   6 STPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAA 475
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475

Chain e from PDB  Type:PROTEIN  Length:473
 aligned with ATPB_YEAST | P00830 from UniProtKB/Swiss-Prot  Length:511

    Alignment length:473
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508   
           ATPB_YEAST    39 STPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAEAN 511
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..eeeeee..........eeeee....eeeeeeeeeee..eeeeee...........eeee.....eeee.........................eeee................ee...hhhhhh...ee...eeeee.....hhhhhhhhhhhhhhhhh...eeeeeeeehhhhhhhhhhhhhhhh.........eeeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhh........eeeeeee..hhhhh..hhhhhhhhh.eeeeee.hhhhhhh...........ee...hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhh......hhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP--------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 8 Exon 8.1  PDB: e:6-478 UniProt: 1-511 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                        Transcript 8
                 4b2q e   6 STPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAEAN 478
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475   

Chain f from PDB  Type:PROTEIN  Length:472
 aligned with ATPB_YEAST | P00830 from UniProtKB/Swiss-Prot  Length:511

    Alignment length:472
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509  
           ATPB_YEAST    40 TPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAEAN 511
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..eeeeee.........eeeeee....eeeeeeeeeee..eeeeee...........eeeeeeee.eeeehhhhh..eee...............eeee......hhhh......ee...hhhhhh...ee...eeee......hhhhhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhh..........eeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh.......hhhhh..hhhhhhhhhhhhh.......eeeeee..hhhhh..hhhhhhhhhhh.ee...hhhhhh............ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.....hhhhhh......hhhhhhhhhhhhhh......hhhhhh...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP--------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 8 Exon 8.1  PDB: f:7-478 UniProt: 1-511 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                       Transcript 8
                 4b2q f   7 TPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAEAN 478
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476  

Chain g from PDB  Type:PROTEIN  Length:269
 aligned with ATPG_YEAST | P38077 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:278
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303        
           ATPG_YEAST    34 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSLG 311
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......---------..eeee.............hhhhhhhhhhhhh........hhhhhhhhh........eeee.......hhhhhhhhhhhhhhh........eeeeeeeeee..eeeeeeeee.hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------I----------------------------------------------------------------------------------------------------F--- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_GAMMA  -- PROSITE
               Transcript 6 Exon 6.1  PDB: g:1-278 (gaps) UniProt: 1-311 [INCOMPLETE]                                                                                                                                                                                                                              Transcript 6
                 4b2q g   1 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLD---------KELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSLG 278
                                    10        20        30        40        50        60|        -|       80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270        
                                                                                       61        71                                                                                                                                                                                                               

Chain h from PDB  Type:PROTEIN  Length:132
 aligned with ATPD_YEAST | Q12165 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:132
                                    38        48        58        68        78        88        98       108       118       128       138       148       158  
           ATPD_YEAST    29 SSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQSVLK 160
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee.........eee.eeeee....eeee.......eeee...eeeee.....eeeee..eeeeee...eeeee...ee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 7 Exon 7.1  PDB: h:7-138 UniProt: 1-160 [INCOMPLETE]                                                                                   Transcript 7
                 4b2q h   7 SSGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQSVLK 138
                                    16        26        36        46        56        66        76        86        96       106       116       126       136  

Chain i from PDB  Type:PROTEIN  Length:59
 aligned with ATP5E_YEAST | P21306 from UniProtKB/Swiss-Prot  Length:62

    Alignment length:59
                                    11        21        31        41        51         
          ATP5E_YEAST     2 SAWRKAGISYAAYLNVAAQAIRSSLKTELQTASVLNRSQTDAFYTQYKNGTAASEPTPI  60
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhh.......hhhhhh......eeee..........ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
               Transcript 9 Exon 9.1  PDB: i:1-59 UniProt: 1-62 [INCOMPLETE]            Transcript 9
                 4b2q i   1 SAWRKAGISYAAYLNVAAQAIRSSLKTELQTASVLNRSQTDAFYTQYKNGTAASEPTPI  59
                                    10        20        30        40        50         

Chain j from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: j:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q j   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain k from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: k:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q k   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain l from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: l:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q l   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain m from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: m:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q m   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain n from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: n:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q n   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain o from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: o:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q o   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain p from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: p:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q p   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain q from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: q:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q q   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain r from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: r:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q r   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain s from PDB  Type:PROTEIN  Length:76
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:76
                                    10        20        30        40        50        60        70      
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S----------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: s:38-59----------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4b2q s   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV  76
                                    10        20        30        40        50        60        70      

Chain t from PDB  Type:PROTEIN  Length:129
 aligned with AT5F1_BOVIN | P13619 from UniProtKB/Swiss-Prot  Length:256

    Alignment length:129
                                   130       140       150       160       170       180       190       200       210       220       230       240         
          AT5F1_BOVIN   121 GEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCIADLKLLSKK 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.4 Exon 1.5  PDB: t:88-129 UniProt: 130-171  Exon 1.6  PDB: t:130-189 UniProt: 172-231                   Exon 1.7           Transcript 1
                 4b2q t  79 GEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCIADLKLLSKK 207
                                    88        98       108       118       128       138       148       158       168       178       188       198         

Chain u from PDB  Type:PROTEIN  Length:120
 aligned with ATP5H_BOVIN | P13620 from UniProtKB/Swiss-Prot  Length:161

    Alignment length:120
                                    14        24        34        44        54        64        74        84        94       104       114       124
          ATP5H_BOVIN     5 KLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRN 124
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhh....hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 3 (1) Exon 3.2  PDB: u:4-40 UniProt: 1-41  --------------------------------Exon 3.4  PDB: u:73-96  Exon 3.5             3.6    Transcript 3 (1)
           Transcript 3 (2) ------------------------------------Exon 3.3  PDB: u:40-72           --------------------------------------------------- Transcript 3 (2)
                 4b2q u   4 KLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRN 123
                                    13        23        33        43        53        63        73        83        93       103       113       123

Chain v from PDB  Type:PROTEIN  Length:65
 aligned with ATP5J_BOVIN | P02721 from UniProtKB/Swiss-Prot  Length:108

    Alignment length:66
                                    45        55        65        75        85        95      
          ATP5J_BOVIN    36 LDPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGKADMNTFPNFTFEDPKFE 101
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh-hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
           Transcript 4 (1) Exon 4.2            -----------------------------------------4.4   Transcript 4 (1)
           Transcript 4 (2) -------------------Exon 4.3  PDB: v:24-66 UniProt: 55-97      ---- Transcript 4 (2)
                 4b2q v   5 LDPVQK-FVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGKADMNTFPNFTFEDPKFE  70
                                 | |14        24        34        44        54        64      
                                10 |                                                          
                                  12                                                          

Chain w from PDB  Type:PROTEIN  Length:110
 aligned with ATPO_BOVIN | P13621 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:110
                                    43        53        63        73        83        93       103       113       123       133       143
           ATPO_BOVIN    34 IYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTV 143
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.........hhhhhhh.......hhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.3  PDB: w:11-43           Exon 2.4  PDB: w:44-87 UniProt: 67-110      --------------------------------- Transcript 2 (1)
           Transcript 2 (2) ----------------------------------------------------------------------------Exon 2.5  PDB: w:87-120            Transcript 2 (2)
                 4b2q w  11 IYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTV 120
                                    20        30        40        50        60        70        80        90       100       110       120

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4B2Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4B2Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4B2Q)

(-) Gene Ontology  (40, 162)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,a,b,c   (ATPA_YEAST | P07251)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0016820    hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances    Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0046034    ATP metabolic process    The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006626    protein targeting to mitochondrion    The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005758    mitochondrial intermembrane space    The region between the inner and outer lipid bilayers of the mitochondrial envelope.
    GO:0042645    mitochondrial nucleoid    The region of a mitochondrion to which the DNA is confined.
    GO:0005754    mitochondrial proton-transporting ATP synthase, catalytic core    The hexamer, comprising three alpha and three beta subunits, that possesses the catalytic activity of the mitochondrial hydrogen-transporting ATP synthase.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.
    GO:0033178    proton-transporting two-sector ATPase complex, catalytic domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.

Chain D,E,F,d,e,f   (ATPB_YEAST | P00830)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016820    hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances    Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0046034    ATP metabolic process    The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006626    protein targeting to mitochondrion    The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005758    mitochondrial intermembrane space    The region between the inner and outer lipid bilayers of the mitochondrial envelope.
    GO:0005754    mitochondrial proton-transporting ATP synthase, catalytic core    The hexamer, comprising three alpha and three beta subunits, that possesses the catalytic activity of the mitochondrial hydrogen-transporting ATP synthase.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.
    GO:0033178    proton-transporting two-sector ATPase complex, catalytic domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.

Chain G,g   (ATPG_YEAST | P38077)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005756    mitochondrial proton-transporting ATP synthase, central stalk    One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the mitochondrial membrane-associated F0 proteins; rotates within the catalytic core during catalysis.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

Chain H,h   (ATPD_YEAST | Q12165)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005756    mitochondrial proton-transporting ATP synthase, central stalk    One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the mitochondrial membrane-associated F0 proteins; rotates within the catalytic core during catalysis.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

Chain I,i   (ATP5E_YEAST | P21306)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0000275    mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)    The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled.
    GO:0005756    mitochondrial proton-transporting ATP synthase, central stalk    One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the mitochondrial membrane-associated F0 proteins; rotates within the catalytic core during catalysis.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

Chain J,K,L,M,N,O,P,Q,R,S,j,k,l,m,n,o,p,q,r,s   (ATP9_YEAST | P61829)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0015078    hydrogen ion transmembrane transporter activity    Enables the transfer of hydrogen ions from one side of a membrane to the other.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
biological process
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006626    protein targeting to mitochondrion    The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005758    mitochondrial intermembrane space    The region between the inner and outer lipid bilayers of the mitochondrial envelope.
    GO:0031966    mitochondrial membrane    Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
    GO:0000276    mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045263    proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins.
    GO:0033177    proton-transporting two-sector ATPase complex, proton-transporting domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins.

Chain T,t   (AT5F1_BOVIN | P13619)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0015078    hydrogen ion transmembrane transporter activity    Enables the transfer of hydrogen ions from one side of a membrane to the other.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
biological process
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0021762    substantia nigra development    The progression of the substantia nigra over time from its initial formation until its mature state. The substantia nigra is the layer of gray substance that separates the posterior parts of the cerebral peduncles (tegmentum mesencephali) from the anterior parts; it normally includes a posterior compact part with many pigmented cells (pars compacta) and an anterior reticular part whose cells contain little pigment (pars reticularis).
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0000276    mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0045263    proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins.

Chain U,u   (ATP5H_BOVIN | P13620)
molecular function
    GO:0015078    hydrogen ion transmembrane transporter activity    Enables the transfer of hydrogen ions from one side of a membrane to the other.
biological process
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0000276    mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045263    proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins.

Chain V,v   (ATP5J_BOVIN | P02721)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0015078    hydrogen ion transmembrane transporter activity    Enables the transfer of hydrogen ions from one side of a membrane to the other.
biological process
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0021762    substantia nigra development    The progression of the substantia nigra over time from its initial formation until its mature state. The substantia nigra is the layer of gray substance that separates the posterior parts of the cerebral peduncles (tegmentum mesencephali) from the anterior parts; it normally includes a posterior compact part with many pigmented cells (pars compacta) and an anterior reticular part whose cells contain little pigment (pars reticularis).
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0000276    mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045263    proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins.

Chain W,w   (ATPO_BOVIN | P13621)
molecular function
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AT5F1_BOVIN | P136192cly 2wss 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATP5E_YEAST | P213062hld 2wpd 3fks 3oe7 3oee 3oeh 3ofn 3zia
        ATP5H_BOVIN | P136202cly 2wss 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATP5J_BOVIN | P027211vzs 2cly 2wss 5ara 5are 5arh 5ari 5fij 5fik 5fil
        ATP9_YEAST | P618292wpd 2xok 3u2f 3u2y 3u32 3ud0 3zry 4f4s 5bps 5bq6 5bqa 5bqj
        ATPA_YEAST | P072512hld 2wpd 2xok 3fks 3oe7 3oee 3oeh 3ofn 3zia 3zry
        ATPB_YEAST | P008302hld 2wpd 2xok 3fks 3oe7 3oee 3oeh 3ofn 3zia 3zry
        ATPD_YEAST | Q121652hld 2wpd 2xok 3fks 3oe7 3oee 3oeh 3ofn 3zia 3zry
        ATPG_YEAST | P380772hld 2wpd 2xok 3fks 3oe7 3oee 3oeh 3ofn 3zia 3zry
        ATPO_BOVIN | P136212bo5 2jmx 2wss 5ara 5are 5arh 5ari 5fij 5fik 5fil

(-) Related Entries Specified in the PDB File

1vzs SOLUTION STRUCTURE OF SUBUNIT F6 FROM THE PERIPHERAL STALK REGION OF ATP SYNTHASE FROM BOVINE HEART MITOCHONDRIA
2bo5 BOVINE OLIGOMYCIN SENSITIVITY CONFERRAL PROTEIN N-TERMINAL DOMAIN
2cly SUBCOMPLEX OF THE STATOR OF BOVINE MITOCHONDRIAL ATP SYNTHASE
2wpd THE MG.ADP INHIBITED STATE OF THE YEAST F1C10 ATP SYNTHASE
2wss THE STRUCTURE OF THE MEMBRANE EXTRINSIC REGION OF BOVINE ATP SYNTHASE
2xok REFINED STRUCTURE OF YEAST F1C10 ATPASE COMPLEX TO 3 A RESOLUTION
3zry ROTOR ARCHITECTURE IN THE F(1)-C(10)-RING COMPLEX OF THE YEAST F-ATP SYNTHASE RELATED ID: EMD-2161 RELATED DB: EMDB STRUCTURE OF THE YEAST F1FO-ATP SYNTHASE DIMER