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(-) Description

Authors :  R. J. Carbajo, J. A. Silvester, M. J. Runswick, J. E. Walker, D. Neuhaus
Date :  25 May 04  (Deposition) - 02 Sep 04  (Release) - 24 Mar 09  (Revision)
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (34x)
Keywords :  Synthase, Atp Synthase, Peripheral Stalk, F6 Subunit, Nmr, Hydrogen Ion Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  R. J. Carbajo, J. A. Silvester, M. J. Runswick, J. E. Walker, D. Neuhaus
Solution Structure Of Subunit F(6) From The Peripheral Stalk Region Of Atp Synthase From Bovine Heart Mitochondria
J. Mol. Biol. V. 342 593 2004
PubMed-ID: 15327958  |  Reference-DOI: 10.1016/J.JMB.2004.07.013

(-) Compounds

    EC Number3.6.3.14
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET
    Expression System StrainC41(DE3)
    Expression System Taxid562
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913

 Structural Features

(-) Chains, Units

NMR Structure (34x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1VZS)

(-) Sites  (0, 0)

(no "Site" information available for 1VZS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VZS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VZS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VZS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VZS)

(-) Exons   (3, 3)

NMR Structure (3, 3)
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:76
 aligned with ATP5J_BOVIN | P02721 from UniProtKB/Swiss-Prot  Length:108

    Alignment length:76
                                    42        52        62        72        82        92       102      
               SCOP domains d1vzsa_ A: ATPase subunit F6                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhh..........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:1-23  -----------------------------------------Exon 1.4     Transcript 1 (1)
           Transcript 1 (2) ----------------------Exon 1.3  PDB: A:23-65 UniProt: 55-97      ----------- Transcript 1 (2)
                                    10        20        30        40        50        60        70      

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1VZS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1VZS)

(-) Gene Ontology  (13, 13)

NMR Structure(hide GO term definitions)
Chain A   (ATP5J_BOVIN | P02721)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0015078    hydrogen ion transmembrane transporter activity    Enables the transfer of hydrogen ions from one side of a membrane to the other.
biological process
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0021762    substantia nigra development    The progression of the substantia nigra over time from its initial formation until its mature state. The substantia nigra is the layer of gray substance that separates the posterior parts of the cerebral peduncles (tegmentum mesencephali) from the anterior parts; it normally includes a posterior compact part with many pigmented cells (pars compacta) and an anterior reticular part whose cells contain little pigment (pars reticularis).
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005753    mitochondrial proton-transporting ATP synthase complex    A proton-transporting ATP synthase complex found in the mitochondrial membrane.
    GO:0000276    mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045263    proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins.


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        ATP5J_BOVIN | P027212cly 2wss 4b2q 5ara 5are 5arh 5ari 5fij 5fik 5fil

(-) Related Entries Specified in the PDB File

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