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(-) Description

Title :  ROTOR ARCHITECTURE IN THE F(1)-C(10)-RING COMPLEX OF THE YEAST F-ATP SYNTHASE
 
Authors :  M. -F. Giraud, A. Dautant
Date :  21 Jun 11  (Deposition) - 18 Jan 12  (Release) - 29 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  6.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S
Biol. Unit 1:  A,B,C,D,E,F,G,H,I  (1x)
Biol. Unit 2:  J,K,L,M,N,O,P,Q,R,S  (1x)
Keywords :  Hydrolase, Atp-Binding, F(1)-F(O)Atp Synthase, Mitochondria, Molecular Motor, Central Stalk, Membrane Protein, C-Ring (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. -F. Giraud, P. Paumard, C. Sanchez, D. Brethes, J. Velours, A. Dautant
Rotor Architecture In The Yeast And Bovine F(1)-C-Ring Complexes Of F-Atp Synthase.
J. Struct. Biol. V. 177 490 2012
PubMed-ID: 22119846  |  Reference-DOI: 10.1016/J.JSB.2011.10.015
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL
    Chains: A, B, C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: D273-10B/A
 
Molecule 2 - ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL
    Chains: D, E, F
    EC Number: 3.6.3.14
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: D273-10B/A
 
Molecule 3 - ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL
    Chains: G
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: D273-10B/A
    Synonym: F-ATPASE GAMMA SUBUNIT
 
Molecule 4 - ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL
    Chains: H
    EC Number: 3.6.3.14
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: D273-10B/A
    Synonym: F-ATPASE DELTA SUBUNIT
 
Molecule 5 - ATP SYNTHASE CATALYTIC SECTOR F1 EPSILON SUBUNIT
    Chains: I
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: D273-10B/A
    Synonym: ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL
 
Molecule 6 - ATP SYNTHASE SUBUNIT 9, MITOCHONDRIAL
    Chains: J, K, L, M, N, O, P, Q, R, S
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: D273-10B/A
    Synonym: LIPID-BINDING PROTEIN, OLIGOMYCIN RESISTANCE PROTEIN 1

 Structural Features

(-) Chains, Units

  12345678910111213141516171819
Asymmetric Unit : ABCDEFGHIJKLMNOPQRS
Biological Unit 1 (1x): ABCDEFGHI          
Biological Unit 2 (1x):          JKLMNOPQRS

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1ANP5Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG5Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1ANP5Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ANP-1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:174 , GLY A:176 , LYS A:177 , THR A:178 , ALA A:179 , PHE A:359 , ARG A:364 , GLN A:432 , ASN A:433 , GLN A:434 , MG A:700 , TYR D:368BINDING SITE FOR RESIDUE ANP A 600
02AC2SOFTWARETHR A:178 , ANP A:600BINDING SITE FOR RESIDUE MG A 700
03AC3SOFTWAREARG B:173 , GLN B:174 , THR B:175 , GLY B:176 , LYS B:177 , THR B:178 , ALA B:179 , PHE B:359 , ARG B:364 , GLN B:432 , MG B:700BINDING SITE FOR RESIDUE ANP B 600
04AC4SOFTWARETHR B:178 , ASP B:271 , ANP B:600BINDING SITE FOR RESIDUE MG B 700
05AC5SOFTWAREARG C:173 , GLN C:174 , THR C:175 , GLY C:176 , LYS C:177 , THR C:178 , ALA C:179 , GLU C:330 , ARG C:364 , GLN C:432 , GLN C:434 , MG C:700BINDING SITE FOR RESIDUE ANP C 600
06AC6SOFTWARETHR C:178 , ASP C:271 , ANP C:600BINDING SITE FOR RESIDUE MG C 700
07AC7SOFTWARESER C:346 , ARG C:375 , GLY D:160 , VAL D:161 , GLY D:162 , LYS D:163 , THR D:164 , VAL D:165 , GLU D:189 , ARG D:190 , TYR D:345 , PHE D:418 , ALA D:421 , MG D:700BINDING SITE FOR RESIDUE ANP D 600
08AC8SOFTWARETHR D:164 , GLU D:189 , ARG D:190 , GLU D:193 , ANP D:600BINDING SITE FOR RESIDUE MG D 700
09AC9SOFTWAREARG B:375 , GLY F:158 , ALA F:159 , GLY F:160 , VAL F:161 , GLY F:162 , LYS F:163 , THR F:164 , VAL F:165 , GLU F:189 , ARG F:190 , TYR F:345 , PRO F:346 , PHE F:418 , ALA F:421 , PHE F:424 , MG F:700BINDING SITE FOR RESIDUE ANP F 600
10BC1SOFTWARELYS F:163 , THR F:164 , GLU F:189 , ASP F:256 , ANP F:600BINDING SITE FOR RESIDUE MG F 700

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ZRY)

(-) Cis Peptide Bonds  (22, 22)

Asymmetric Unit
No.Residues
1Asp A:271 -Asp A:272
2Arg A:364 -Pro A:365
3Asp B:271 -Asp B:272
4Arg B:364 -Pro B:365
5Asp C:271 -Asp C:272
6Arg C:364 -Pro C:365
7Asp D:256 -Asn D:257
8Tyr D:345 -Pro D:346
9Asp E:256 -Asn E:257
10Tyr E:345 -Pro E:346
11Asp F:256 -Asn F:257
12Tyr F:345 -Pro F:346
13Asn J:40 -Pro J:41
14Asn K:40 -Pro K:41
15Asn L:40 -Pro L:41
16Asn M:40 -Pro M:41
17Asn N:40 -Pro N:41
18Asn O:40 -Pro O:41
19Asn P:40 -Pro P:41
20Asn Q:40 -Pro Q:41
21Asn R:40 -Pro R:41
22Asn S:40 -Pro S:41

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (6, 42)

Asymmetric Unit (6, 42)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_ATP9_YEAST_001 *T46LATP9_YEAST  ---  ---J/K/L/M/N/O/P/Q/R/ST46L
2UniProtVAR_ATP9_YEAST_002 *L53FATP9_YEAST  ---  ---J/K/L/M/N/O/P/Q/R/SL53F
3UniProtVAR_ATP9_YEAST_003 *L57VATP9_YEAST  ---  ---J/K/L/M/N/O/P/Q/R/SL57V
4UniProtVAR_ATP9_YEAST_004 *C65SATP9_YEAST  ---  ---J/K/L/M/N/O/P/Q/R/SC65S
5UniProtVAR_ATPG_YEAST_001 *S207IATPG_YEAST  ---  ---GS174I
6UniProtVAR_ATPG_YEAST_002 *S308FATPG_YEAST  ---  ---GS275F
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
5UniProtVAR_ATPG_YEAST_001 *S207IATPG_YEAST  ---  ---GS174I
6UniProtVAR_ATPG_YEAST_002 *S308FATPG_YEAST  ---  ---GS275F
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (4, 40)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_ATP9_YEAST_001 *T46LATP9_YEAST  ---  ---J/K/L/M/N/O/P/Q/R/ST46L
2UniProtVAR_ATP9_YEAST_002 *L53FATP9_YEAST  ---  ---J/K/L/M/N/O/P/Q/R/SL53F
3UniProtVAR_ATP9_YEAST_003 *L57VATP9_YEAST  ---  ---J/K/L/M/N/O/P/Q/R/SL57V
4UniProtVAR_ATP9_YEAST_004 *C65SATP9_YEAST  ---  ---J/K/L/M/N/O/P/Q/R/SC65S
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 17)

Asymmetric Unit (3, 17)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ATPASE_CPS00605 ATP synthase c subunit signature.ATP9_YEAST38-59
 
 
 
 
 
 
 
 
 		  10J:38-59
K:38-59
L:38-59
M:38-59
N:38-59
O:38-59
P:38-59
Q:38-59
R:38-59
S:38-59
2ATPASE_GAMMAPS00153 ATP synthase gamma subunit signature.ATPG_YEAST296-309  1G:263-276
3ATPASE_ALPHA_BETAPS00152 ATP synthase alpha and beta subunits signature.ATPB_YEAST379-388
 
 		  3D:346-355
E:346-355
F:346-355
ATPA_YEAST400-409
 
 		  3A:365-374
B:365-374
C:365-374
Biological Unit 1 (2, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ATPASE_CPS00605 ATP synthase c subunit signature.ATP9_YEAST38-59
 
 
 
 
 
 
 
 
 		  0-
-
-
-
-
-
-
-
-
-
2ATPASE_GAMMAPS00153 ATP synthase gamma subunit signature.ATPG_YEAST296-309  1G:263-276
3ATPASE_ALPHA_BETAPS00152 ATP synthase alpha and beta subunits signature.ATPB_YEAST379-388
 
 		  3D:346-355
E:346-355
F:346-355
ATPA_YEAST400-409
 
 		  3A:365-374
B:365-374
C:365-374
Biological Unit 2 (1, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ATPASE_CPS00605 ATP synthase c subunit signature.ATP9_YEAST38-59
 
 
 
 
 
 
 
 
 		  10J:38-59
K:38-59
L:38-59
M:38-59
N:38-59
O:38-59
P:38-59
Q:38-59
R:38-59
S:38-59
2ATPASE_GAMMAPS00153 ATP synthase gamma subunit signature.ATPG_YEAST296-309  0-
3ATPASE_ALPHA_BETAPS00152 ATP synthase alpha and beta subunits signature.ATPB_YEAST379-388
 
 		  0-
-
-
ATPA_YEAST400-409
 
 		  0-
-
-

(-) Exons   (4, 8)

Asymmetric Unit (4, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YBL099W1YBL099W.1II:37050-386871638ATPA_YEAST1-5455453A:26-510 (gaps)
B:25-510 (gaps)
C:26-510		485
486
485
2.1YBR039W1YBR039W.1II:315575-316510936ATPG_YEAST1-3113111G:1-277 (gaps)277
3.1YDL004W1YDL004W.1IV:443027-443509483ATPD_YEAST1-1601601H:12-136 (gaps)125
4.1YJR121W1YJR121W.1X:647597-6491321536ATPB_YEAST1-5115113D:6-476
E:8-476
F:7-476		471
469
470

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:483
 aligned with ATPA_YEAST | P07251 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:485
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540     
           ATPA_YEAST    61 NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 545
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..eeeeee.......eeeee....eeeeeee...eeeeee..hhhhh....eeeeeeee.eeee......eeee...............eeee................ee...hhhhhhhh.ee.....eeee....hhhhhhhhhhhhhhhhhh..hhhhh.eeeeeee..hhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhh.ee.hhhhh..eeeeeeeee.......hhhhhhhhh...eeeeehhhhhhhh....eeeeeeee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh--...hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: A:26-510 (gaps) UniProt: 1-545 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                            Transcript 1
                 3zry A  26 NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQ--SDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405 |  |  415       425       435       445       455       465       475       485       495       505     
                                                                                                                                                                                                                                                                                                                                                                                                                       407  |                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                          410                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:484
 aligned with ATPA_YEAST | P07251 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:486
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539      
           ATPA_YEAST    60 ANLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 545
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeee..eeeeee.......eeeee....eeeeeee...eeeeee..hhhhh....eeeeeeee.eeeehhhhh..ee................eeee................ee...hhhhhhhh.ee......eee....hhhhhhhhhhhhhhhhhh.......eeeeeeee..hhhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhh.....hhhhh..ee..eeeee.......hhhhhhhhh...ee...hhhhhhh......hhhhhee.......hhhhhhhh.hhhhhhhhhhhhhh...--.......hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhh..hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: B:25-510 (gaps) UniProt: 1-545 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                             Transcript 1
                 3zry B  25 ANLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQ--SDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404  |  | 414       424       434       444       454       464       474       484       494       504      
                                                                                                                                                                                                                                                                                                                                                                                                                        407  |                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                           410                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:485
 aligned with ATPA_YEAST | P07251 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:485
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540     
           ATPA_YEAST    61 NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 545
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................................................................eeeehhhhh..eee...............eeee.....................hhhhhhhh........eeee....hhhhhhhhhhhhhhhhhh........eeeeeee..hhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhh.....hhhhh..eeeeeeeee.......hhhhhhhhhhh..eeeehhhhhhh..............hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: C:26-510 UniProt: 1-545 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                   Transcript 1
                 3zry C  26 NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505     


Chain D from PDB  Type:PROTEIN  Length:471
 aligned with ATPB_YEAST | P00830 from UniProtKB/Swiss-Prot  Length:511

    Alignment length:471
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508 
           ATPB_YEAST    39 STPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAE 509
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............................................................................eee.hhhhh..ee.................eee......hhhh...........hhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhh.........eeeeee....hhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhh......hhhhh..hhhhhhhhhhh........eeeeeeeee.hhhh..hhhhhhhhhhh.eeee.hhhhhhh...........ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh......hhhhhh......hhhhhhhhhhhhhh......hhhhhh...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 4 Exon 4.1  PDB: D:6-476 UniProt: 1-511 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                      Transcript 4
                 3zry D   6 STPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAE 476
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475 


Chain E from PDB  Type:PROTEIN  Length:469
 aligned with ATPB_YEAST | P00830 from UniProtKB/Swiss-Prot  Length:511

    Alignment length:469
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500         
           ATPB_YEAST    41 PITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAE 509
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..eeeee...........eeeee....eeeeeeeeeee..eeeeee...........eeee.....eee.hhhhh..ee.................eee................ee...hhhhhhhh.ee...eeeee.....hhhhhhhhhhhhhhhh....eeeeeeeehhhhhhhhhhhhhhh..........eeeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhh........eeeeeee..hhhhh..hhhhhhhhh...eeee.hhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh......hhhhhh......hhhhhhhhhhhhhh................hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 4 Exon 4.1  PDB: E:8-476 UniProt: 1-511 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                    Transcript 4
                 3zry E   8 PITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAE 476
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467         


Chain F from PDB  Type:PROTEIN  Length:470
 aligned with ATPB_YEAST | P00830 from UniProtKB/Swiss-Prot  Length:511

    Alignment length:470
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509
           ATPB_YEAST    40 TPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAE 509
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..eeeeee..........eeeee....eeeeeeeeeee..eeeeee...........eeee.....eee.hhhhh..ee.................eee.....................hhhhhhhh......eeeeee....hhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh...........eeee....hhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhh......hhhhh..hhhhhhhhhhh.........eeeeeeee.hhhh..hhhhhhhhh...eeeeehhhhhhh...........ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh......hhhhhhhhhhhhhh......hhhhhh...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_ALP------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 4 Exon 4.1  PDB: F:7-476 UniProt: 1-511 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                     Transcript 4
                 3zry F   7 TPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQRFLSQPFAVAEVFTGIPGKLVRLKDTVASFKAVLEGKYDNIPEHAFYMVGGIEDVVAKAEKLAAE 476
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476


Chain G from PDB  Type:PROTEIN  Length:266
 aligned with ATPG_YEAST | P38077 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:277
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       
           ATPG_YEAST    34 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 310
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh...-----------.eeeeee........hhhhhhhhhhhhh.......eeeeehhhhhhhhhh.....eeeee........hhhhhhhhhhhhhhh.......eeeeeeee.......eeeeeee..hhhhh...hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------I----------------------------------------------------------------------------------------------------F-- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATPASE_GAMMA  - PROSITE
               Transcript 2 Exon 2.1  PDB: G:1-277 (gaps) UniProt: 1-311 [INCOMPLETE]                                                                                                                                                                                                                             Transcript 2
                 3zry G   1 ATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDEAEQLFYKNAETKN-----------KELIVAITSDKGLCGSIHSQLAKAVRRHLNDQPNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSFGKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 277
                                    10        20        30        40        50        |-         -|       80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       
                                                                                     59          71                                                                                                                                                                                                              


Chain H from PDB  Type:PROTEIN  Length:119
 aligned with ATPD_YEAST | Q12165 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:125
                                    43        53        63        73        83        93       103       113       123       133       143       153     
           ATPD_YEAST    34 LQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQSV 158
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............--....eeee....eeee.......eeee....eee......eee....eeeee.....eeee....-......-hhhhhhhhhhhhhhhh.--..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 3 Exon 3.1  PDB: H:12-136 (gaps) UniProt: 1-160 [INCOMPLETE]                                                                    Transcript 3
                 3zry H  12 LQFALPHETLYS--EVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEA-PLESFS-ENIKNLLAEAKKNVSSS--REAAEAAIQVEVLENLQSV 136
                                    21 |  |   31        41        51        61        71        81        |-|    | 101       111   |  |121       131     
                                      23 26                                                              90 |   97 |             115  |                  
                                                                                                           92     99                118                  


Chain I from PDB  Type:PROTEIN  Length:49
 aligned with E9P9X4_YEASX | E9P9X4 from UniProtKB/TrEMBL  Length:62

    Alignment length:54
                                    18        28        38        48        58    
         E9P9X4_YEASX     9 MSYAAYLNVAAQAIRSSLKTELQTASVTNRSQTDAFYTQYKNGTAASEPTPMTK  62
               SCOP domains ------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhh.......--.....hhhhhhh....eee....---.....eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------ Transcript
                 3zry I   8 MSYAAYLNVAAQAIRSS--TELQTASVTNRSQTDAFYTQYKN---ASEPTPMTK  61
                                    17      | 27        37        47 |   |  57    
                                           24 27                    49  53        


Chain J from PDB  Type:PROTEIN  Length:73
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:73
                                    11        21        31        41        51        61        71   
           ATP9_YEAST     2 QLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF  74
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------L------F---V-------S--------- SAPs(SNPs)
                    PROSITE ------------------------------------ATPASE_C  PDB: J:38-59--------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 3zry J   2 QLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF  74
                                    11        21        31        41        51        61        71   


Chain K from PDB  Type:PROTEIN  Length:73
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:73
                                    12        22        32        42        52        62        72   
           ATP9_YEAST     3 LVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG  75
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------L------F---V-------S---------- SAPs(SNPs)
                    PROSITE -----------------------------------ATPASE_C  PDB: K:38-59---------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 3zry K   3 LVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG  75
                                    12        22        32        42        52        62        72   


Chain L from PDB  Type:PROTEIN  Length:72
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:72
                                    11        21        31        41        51        61        71  
           ATP9_YEAST     2 QLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLL  73
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------L------F---V-------S-------- SAPs(SNPs)
                    PROSITE ------------------------------------ATPASE_C  PDB: L:38-59-------------- PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 3zry L   2 QLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLL  73
                                    11        21        31        41        51        61        71  


Chain M from PDB  Type:PROTEIN  Length:73
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:73
                                    10        20        30        40        50        60        70   
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLL  73
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S-------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: M:38-59-------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 3zry M   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLL  73
                                    10        20        30        40        50        60        70   


Chain N from PDB  Type:PROTEIN  Length:73
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:73
                                    10        20        30        40        50        60        70   
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLL  73
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S-------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: N:38-59-------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 3zry N   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLL  73
                                    10        20        30        40        50        60        70   


Chain O from PDB  Type:PROTEIN  Length:74
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:74
                                    10        20        30        40        50        60        70    
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF  74
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S--------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: O:38-59--------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                 3zry O   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF  74
                                    10        20        30        40        50        60        70    


Chain P from PDB  Type:PROTEIN  Length:75
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:75
                                    10        20        30        40        50        60        70     
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG  75
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S---------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: P:38-59---------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 3zry P   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG  75
                                    10        20        30        40        50        60        70     


Chain Q from PDB  Type:PROTEIN  Length:75
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:75
                                    10        20        30        40        50        60        70     
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG  75
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S---------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: Q:38-59---------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 3zry Q   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG  75
                                    10        20        30        40        50        60        70     


Chain R from PDB  Type:PROTEIN  Length:74
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:74
                                    10        20        30        40        50        60        70    
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF  74
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S--------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: R:38-59--------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                 3zry R   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF  74
                                    10        20        30        40        50        60        70    


Chain S from PDB  Type:PROTEIN  Length:74
 aligned with ATP9_YEAST | P61829 from UniProtKB/Swiss-Prot  Length:76

    Alignment length:74
                                    10        20        30        40        50        60        70    
           ATP9_YEAST     1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF  74
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------L------F---V-------S--------- SAPs(SNPs)
                    PROSITE -------------------------------------ATPASE_C  PDB: S:38-59--------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                 3zry S   1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLF  74
                                    10        20        30        40        50        60        70
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ZRY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZRY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZRY)

(-) Gene Ontology  (34, 99)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (ATPA_YEAST | P07251)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0016820    hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances    Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0046034    ATP metabolic process    The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006626    protein targeting to mitochondrion    The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005758    mitochondrial intermembrane space    The region between the inner and outer lipid bilayers of the mitochondrial envelope.
    GO:0042645    mitochondrial nucleoid    The region of a mitochondrion to which the DNA is confined.
    GO:0005754    mitochondrial proton-transporting ATP synthase, catalytic core    The hexamer, comprising three alpha and three beta subunits, that possesses the catalytic activity of the mitochondrial hydrogen-transporting ATP synthase.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.
    GO:0033178    proton-transporting two-sector ATPase complex, catalytic domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.

Chain D,E,F   (ATPB_YEAST | P00830)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016820    hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances    Catalysis of the hydrolysis of an acid anhydride to directly drive the transport of a substance across a membrane.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0046034    ATP metabolic process    The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006626    protein targeting to mitochondrion    The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005758    mitochondrial intermembrane space    The region between the inner and outer lipid bilayers of the mitochondrial envelope.
    GO:0005754    mitochondrial proton-transporting ATP synthase, catalytic core    The hexamer, comprising three alpha and three beta subunits, that possesses the catalytic activity of the mitochondrial hydrogen-transporting ATP synthase.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.
    GO:0033178    proton-transporting two-sector ATPase complex, catalytic domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.

Chain G   (ATPG_YEAST | P38077)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005756    mitochondrial proton-transporting ATP synthase, central stalk    One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the mitochondrial membrane-associated F0 proteins; rotates within the catalytic core during catalysis.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

Chain H   (ATPD_YEAST | Q12165)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005756    mitochondrial proton-transporting ATP synthase, central stalk    One of two stalks that connect the catalytic core of the hydrogen-transporting ATP synthase to the mitochondrial membrane-associated F0 proteins; rotates within the catalytic core during catalysis.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045261    proton-transporting ATP synthase complex, catalytic core F(1)    The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

Chain I   (E9P9X4_YEASX | E9P9X4)
molecular function
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
    GO:0046961    proton-transporting ATPase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
cellular component
    GO:0000275    mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)    The catalytic sector of the mitochondrial hydrogen-transporting ATP synthase; it comprises the catalytic core and central stalk, and is peripherally associated with the mitochondrial inner membrane when the entire ATP synthase is assembled.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Chain J,K,L,M,N,O,P,Q,R,S   (ATP9_YEAST | P61829)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0015078    hydrogen ion transmembrane transporter activity    Enables the transfer of hydrogen ions from one side of a membrane to the other.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0046933    proton-transporting ATP synthase activity, rotational mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
biological process
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006626    protein targeting to mitochondrion    The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005758    mitochondrial intermembrane space    The region between the inner and outer lipid bilayers of the mitochondrial envelope.
    GO:0031966    mitochondrial membrane    Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
    GO:0000276    mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of the mitochondrial hydrogen-transporting ATP synthase, including integral and peripheral mitochondrial inner membrane proteins.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0045263    proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins.
    GO:0033177    proton-transporting two-sector ATPase complex, proton-transporting domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins.

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  ATPA_YEAST | P07251
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  ATPB_YEAST | P00830
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  ATPD_YEAST | Q12165
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  ATPG_YEAST | P38077
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    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  E9P9X4_YEASX | E9P9X4
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATP9_YEAST | P61829: 2wpd 2xok 3u2f 3u2y 3u32 3ud0 4b2q 4f4s 5bps 5bq6 5bqa 5bqj
        ATPA_YEAST | P07251: 2hld 2wpd 2xok 3fks 3oe7 3oee 3oeh 3ofn 3zia 4b2q
        ATPB_YEAST | P00830: 2hld 2wpd 2xok 3fks 3oe7 3oee 3oeh 3ofn 3zia 4b2q
        ATPD_YEAST | Q12165: 2hld 2wpd 2xok 3fks 3oe7 3oee 3oeh 3ofn 3zia 4b2q
        ATPG_YEAST | P38077: 2hld 2wpd 2xok 3fks 3oe7 3oee 3oeh 3ofn 3zia 4b2q
UniProtKB/TrEMBL
        E9P9X4_YEASX | E9P9X4: 2xok

(-) Related Entries Specified in the PDB File

1qo1 MOLECULAR ARCHITECTURE OF THE ROTARY MOTOR IN ATP SYNTHASE FROM YEAST MITOCHONDRIA
2wpd THE MG.ADP INHIBITED STATE OF THE YEAST F1C10 ATP SYNTHASE
2xok REFINED STRUCTURE OF YEAST F1C10 ATPASE COMPLEX TO 3 A RESOLUTION