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(-) Description

Title :  CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH BID BH3 DOMAIN
 
Authors :  R. Sreekanth, H. S. Yoon
Date :  14 Jul 14  (Deposition) - 10 Jun 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein-Peptide Complex, Bcl-2 Like, Heterodimer, Apoptosis, Anti- Apoptotic, Bh3 Binding, Bid Bh3 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Rajan, M. Choi, K. Baek, H. S. Yoon
Bh3 Induced Conformational Changes In Bcl-Xl Revealed By Crystal Structure And Comparative Analysis
Proteins 2015
PubMed-ID: 25907960  |  Reference-DOI: 10.1002/PROT.24816

(-) Compounds

Molecule 1 - BCL-2-LIKE PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETSUMO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-209
    Gene: BCL2L1, BCL2L, BCLX
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BCL2-L-1, APOPTOSIS REGULATOR BCL-X
 
Molecule 2 - PEPTIDE FROM BH3-INTERACTING DOMAIN DEATH AGONIST
    Chains: B
    Engineered: YES
    Fragment: BID BH3, UNP RESIDUES 76-109
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: THIS BID BH3 SEQUENCE OCCURS NATURALLY IN HUMANS
    Synonym: P22 BID, BID, BH3-INTERACTING DOMAIN DEATH AGONIST P15, P15 BID, BH3-INTERACTING DOMAIN DEATH AGONIST P13, P13 BID, BH3- INTERACTING DOMAIN DEATH AGONIST P11, P11 BID
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1IMD1Ligand/IonIMIDAZOLE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:104 , PHE A:105 , ARG A:165 , GLN B:92 , HOH B:513BINDING SITE FOR RESIDUE IMD B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QVE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QVE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4QVE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh....hhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qve A   4 SNRELVVDFLSYKLSQKGYSWSAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNN 198
                                    13        23 ||     92       102       112       122       132       142       152       162       172       182       192      
                                                25|                                                                                                                 
                                                 85                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:28
                                                            
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                 4qve B  77 ESQEDIIRNIARHLAQVGDSMDRSIPPG 104
                                    86        96
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QVE)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (96, 111)

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  BID_HUMAN | P55957
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B2CL1_HUMAN | Q07817: 1bxl 1g5j 1g5m 1gjh 1lxl 1maz 1r2d 1r2e 1r2g 1r2h 1r2i 1ysg 1ysi 1ysn 2b48 2lp8 2lpc 2m03 2m04 2me8 2me9 2mej 2o1y 2o21 2o22 2o2m 2o2n 2p1l 2pon 2yj1 2yq6 2yq7 2yxj 3cva 3fdl 3fdm 3inq 3io8 3pl7 3qkd 3r85 3sp7 3spf 3wiz 3zk6 3zln 3zlo 3zlr 4a1u 4a1w 4aq3 4bpk 4c52 4c5d 4cin 4ehr 4hnj 4ieh 4ppi 4qvf 4qvx 4tuh 4z9v 5agw 5agx 5b1z 5c3g 5fmj 5fmk
        BID_HUMAN | P55957: 1zy3 2bid 2kbw 2m5b 2m5i 4bd2 4zeq 4zig 4zii 5ajj 5c3f

(-) Related Entries Specified in the PDB File

1maz 4qvf