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(-) Description

Title :  CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH BIM BH3 DOMAIN
 
Authors :  R. Sreekanth, H. S. Yoon
Date :  15 Jul 14  (Deposition) - 10 Jun 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein-Peptide Complex, Bcl-2 Like, Heterodimer, Apoptosis, Anti- Apoptotic, Bh3 Binding, Bim Bh3 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Rajan, M. Choi, K. Baek, H. S. Yoon
Bh3 Induced Conformational Changes In Bcl-Xl Revealed By Crystal Structure And Comparative Analysis
Proteins 2015
PubMed-ID: 25907960  |  Reference-DOI: 10.1002/PROT.24816

(-) Compounds

Molecule 1 - BCL-2-LIKE PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETSUMO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-209
    Gene: BCL2L1, BCL2L, BCLX
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BCL2-L-1, APOPTOSIS REGULATOR BCL-X
 
Molecule 2 - PEPTIDE FROM BCL-2-LIKE PROTEIN 11
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 141-166
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: THIS BIM BH3 SEQUENCE OCCURS NATURALLY IN HUMANS
    Synonym: BCL2-L-11, BCL2-INTERACTING MEDIATOR OF CELL DEATH
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4QVF)

(-) Sites  (0, 0)

(no "Site" information available for 4QVF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QVF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QVF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QVF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QVF)

(-) Exons   (0, 0)

(no "Exon" information available for 4QVF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh...hhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhh.....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qvf A   2 SQSNRELVVDFLSYKLSQKGYSWSQFSDVAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG 196
                                    11        21        85        95       105       115       125       135       145       155       165       175       185       195 
                                                       30|                                                                                                               
                                                        85                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 4qvf B  54 PEIWIAQELRRIGDEFNAYYA  74
                                    63        73
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QVF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QVF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QVF)

(-) Gene Ontology  (117, 133)

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  B2CL1_HUMAN | Q07817
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  B2L11_HUMAN | O43521
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B2CL1_HUMAN | Q07817: 1bxl 1g5j 1g5m 1gjh 1lxl 1maz 1r2d 1r2e 1r2g 1r2h 1r2i 1ysg 1ysi 1ysn 2b48 2lp8 2lpc 2m03 2m04 2me8 2me9 2mej 2o1y 2o21 2o22 2o2m 2o2n 2p1l 2pon 2yj1 2yq6 2yq7 2yxj 3cva 3fdl 3fdm 3inq 3io8 3pl7 3qkd 3r85 3sp7 3spf 3wiz 3zk6 3zln 3zlo 3zlr 4a1u 4a1w 4aq3 4bpk 4c52 4c5d 4cin 4ehr 4hnj 4ieh 4ppi 4qve 4qvx 4tuh 4z9v 5agw 5agx 5b1z 5c3g 5fmj 5fmk
        B2L11_HUMAN | O43521: 1f95 2k7w 2nl9 2v6q 2vm6 2wh6 2yq6 2yq7 3d7v 3fdl 3io8 3io9 3kj0 3kj1 3kj2 4a1u 4a1w 4b4s 4d2m 4uf3 4yj4 4zie 4zif 4zih 5agw 5agx 5c3g

(-) Related Entries Specified in the PDB File

1maz 4qve