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(-) Description

Title :  TCTP CONTAINS A BH3-LIKE DOMAIN, WHICH INSTEAD OF INHIBITING, ACTIVATES BCL-XL
 
Authors :  V. Cura, M. Agez, S. Thebault, J. Cavarelli
Date :  12 Apr 15  (Deposition) - 10 Feb 16  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Tctp, Apoptose, Bh3, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Thebault, M. Agez, X. Chi, J. Stojko, V. Cura, S. B. Telerman, L. Maillet, F. Gautier, I. Billas-Massobrio, C. Birck, N. Troffer-Charlier, T. Karafin, J. Honore, A. Senff-Ribeiro, S. Montessuit, C. M. Johnson, P. Juin, S. Cianferani, J. C. Martinou, D. W. Andrews, R. Amson, A. Telerman, J. Cavarelli
Tctp Contains A Bh3-Like Domain, Which Instead Of Inhibiting, Activates Bcl-Xl.
Sci Rep V. 6 19725 2016
PubMed-ID: 26813996  |  Reference-DOI: 10.1038/SREP19725

(-) Compounds

Molecule 1 - BCL-2-LIKE PROTEIN 1,APOPTOSIS REGULATOR BCL-XL
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Cell Line: PRARE2
    Expression System Taxid: 469008
    Gene: BCL2L1, BCL2L, BCLX
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BCL2-L-1,APOPTOSIS REGULATOR BCL-X
 
Molecule 2 - TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN
    Chains: C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: TPT1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: TRANSLATIONALLY CONTROLLED TUMOR PROTEIN;
N TERMINAL FRAGMENT 11-31
    Synonym: TCTP,FORTILIN,HISTAMINE-RELEASING FACTOR,HRF,P23

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1BCT2Ligand/IonBICARBONATE ION
2NA2Ligand/IonSODIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:11 , TYR A:15 , ALA A:84 , ARG A:91 , HOH A:416 , ARG B:91 , GLU H:30binding site for residue BCT A 301
2AC2SOFTWAREARG A:91 , ASP B:11 , TYR B:15 , ALA B:84 , ARG B:91 , GLU G:30binding site for residue BCT B 301
3AC3SOFTWAREASP F:25 , CYS F:28 , GLU F:30binding site for residue NA F 101
4AC4SOFTWAREHOH A:408 , HOH B:406 , HOH G:102 , GLU H:30binding site for residue NA H 101

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1E:28 -G:28
2F:28 -H:28

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z9V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z9V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z9V)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z9V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z9v A   0 HMSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQE 208
                                     9        19      ||85        95       105       115       125       135       145       155       165       175       185       195       205   
                                                     26|                                                                                                                             
                                                      83                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhh......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z9v B   1 MSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQ 207
                                    10        20     || 86        96       106       116       126       136       146       156       166       176       186       196       206 
                                                    26|                                                                                                                            
                                                     83                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:15
                                               
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 4z9v C  15 SDIYKIREIADGLCL  29
                                    24     


Chain D from PDB  Type:PROTEIN  Length:16
                                                
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 4z9v D  14 FSDIYKIREIADGLCL  29
                                    23      


Chain E from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 4z9v E  11 DEMFSDIYKIREIADGLCLEV  31
                                    20        30 


Chain F from PDB  Type:PROTEIN  Length:20
                                                    
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                 4z9v F  11 DEMFSDIYKIREIADGLCLE  30
                                    20        30


Chain G from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 4z9v G  11 DEMFSDIYKIREIADGLCLEV  31
                                    20        30 


Chain H from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 4z9v H  11 DEMFSDIYKIREIADGLCLEV  31
                                    20        30
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z9V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z9V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z9V)

(-) Gene Ontology  (78, 85)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B2CL1_HUMAN | Q07817: 1bxl 1g5j 1g5m 1gjh 1lxl 1maz 1r2d 1r2e 1r2g 1r2h 1r2i 1ysg 1ysi 1ysn 2b48 2lp8 2lpc 2m03 2m04 2me8 2me9 2mej 2o1y 2o21 2o22 2o2m 2o2n 2p1l 2pon 2yj1 2yq6 2yq7 2yxj 3cva 3fdl 3fdm 3inq 3io8 3pl7 3qkd 3r85 3sp7 3spf 3wiz 3zk6 3zln 3zlo 3zlr 4a1u 4a1w 4aq3 4bpk 4c52 4c5d 4cin 4ehr 4hnj 4ieh 4ppi 4qve 4qvf 4qvx 4tuh 5agw 5agx 5b1z 5c3g 5fmj 5fmk
        TCTP_HUMAN | P13693: 1yz1 2hr9 3ebm

(-) Related Entries Specified in the PDB File

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