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(-) Description

Title :  CRYSTALLOGRAPHIC STRUCTURE OF BCL-XL DOMAIN-SWAPPED DIMER IN COMPLEX WITH PUMA BH3 PEPTIDE AT 2.9A RESOLUTION
 
Authors :  J. C. Fisher, M. K. Yun, S. W. White
Date :  19 Oct 12  (Deposition) - 23 Jan 13  (Release) - 06 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Bcl2-Family, Domain-Swapped Dimer, Apoptosis Regulation, Bcl-Xl, Puma, Apoptosis-Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. V. Follis, J. E. Chipuk, J. C. Fisher, M. K. Yun, C. R. Grace, A. Nourse K. Baran, L. Ou, L. Min, S. W. White, D. R. Green, R. W. Kriwacki
Puma Binding Induces Partial Unfolding Within Bcl-Xl To Disrupt P53 Binding And Promote Apoptosis.
Nat. Chem. Biol. V. 9 163 2013
PubMed-ID: 23340338  |  Reference-DOI: 10.1038/NCHEMBIO.1166

(-) Compounds

Molecule 1 - BCL-2-LIKE PROTEIN 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BCL2L1, BCL2L, BCLX
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BCL2-L-1, APOPTOSIS REGULATOR BCL-X
 
Molecule 2 - BCL-2-BINDING COMPONENT 3
    Chains: C
    Engineered: YES
    Fragment: BH3 DOMAIN PEPTIDE
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JFY-1, P53 UP-REGULATED MODULATOR OF APOPTOSIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HNJ)

(-) Sites  (0, 0)

(no "Site" information available for 4HNJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HNJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HNJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HNJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HNJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4HNJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hnj A  -1 SHMSQSNRELVVDFLSYKLSQKGYSWIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG 196
                                     8        18     || 84        94       104       114       124       134       144       154       164       174       184       194  
                                                    24|                                                                                                                   
                                                     81                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.....hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hnj B  -1 SHMSQSNRELVVDFLSYKLSQKGYSWSQFSDVEEPMAAVKQALREAGDEFELRYRRAFQSFEQVVNELFVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELY 195
                                     8        18        28   ||   87        97       122       135       145       155       165       175       185       195
                                                            32|                    105|       131|                                                            
                                                             82                     121        135                                                            


Chain C from PDB  Type:PROTEIN  Length:22
                                                      
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 4hnj C 302 EQWAREIGAQLRRMADDLNAQY 323
                                   311       321
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HNJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HNJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HNJ)

(-) Gene Ontology  (93, 102)

Asymmetric/Biological Unit(hide GO term definitions)

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  B2CL1_HUMAN | Q07817
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  BBC3_HUMAN | Q9BXH1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B2CL1_HUMAN | Q07817: 1bxl 1g5j 1g5m 1gjh 1lxl 1maz 1r2d 1r2e 1r2g 1r2h 1r2i 1ysg 1ysi 1ysn 2b48 2lp8 2lpc 2m03 2m04 2me8 2me9 2mej 2o1y 2o21 2o22 2o2m 2o2n 2p1l 2pon 2yj1 2yq6 2yq7 2yxj 3cva 3fdl 3fdm 3inq 3io8 3pl7 3qkd 3r85 3sp7 3spf 3wiz 3zk6 3zln 3zlo 3zlr 4a1u 4a1w 4aq3 4bpk 4c52 4c5d 4cin 4ehr 4ieh 4ppi 4qve 4qvf 4qvx 4tuh 4z9v 5agw 5agx 5b1z 5c3g 5fmj 5fmk
        BBC3_HUMAN | Q9BXH1: 2m04 4bpi 4bpj 4bpk 5uul

(-) Related Entries Specified in the PDB File

2m03 SOLUTION STRUCTURE OF BCL-XL DETERMINED WITH SELECTIVE ISOTOPE LABELLING OF I,L,V SIDECHAINS
2m04 SOLUTION STRUCTURE OF BCL-XL IN COMPLEX WITH PUMA BH3 PEPTIDE