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(-) Description

Title :  CRYSTAL STRUCTURE OF VARIOLA VIRUS VIRULENCE FACTOR F1L IN COMPLEX WITH HUMAN BID BH3 DOMAIN
 
Authors :  M. Kvansakul, P. M. Colman
Date :  25 Feb 15  (Deposition) - 25 Mar 15  (Release) - 29 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Viral Protein, Bcl-2, Apoptosis, Poxvirus, Bid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Marshall, H. Puthalakath, S. Caria, S. Chugh, M. Doerflinger, P. M. Colman, M. Kvansakul
Variola Virus F1L Is A Bcl-2-Like Protein That Unlike Its Vaccinia Virus Counterpart Inhibits Apoptosis Independent Of Bim.
Cell Death Dis. V. 6 E1680 2015
PubMed-ID: 25766319  |  Reference-DOI: 10.1038/CDDIS.2015.52

(-) Compounds

Molecule 1 - HOMOLOG OF VACCINIA VIRUS CDS F1L PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: PLYZS
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 39-201
    Organism Common: SMALLPOX
    Organism Scientific: VARIOLA VIRUS
    Organism Taxid: 10255
    Strain: BANGLADESH
    Synonym: VARIOLA VIRUS F1L, HOMOLOG OF VACCINIA VIRUS CDS F1L PUTATIVE SYNONYM VARIOLA VIRUS F1L
 
Molecule 2 - BH3-INTERACTING DOMAIN DEATH AGONIST
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: PLYZS
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 79-112
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: SYNTHETHIC CDNA
    Synonym: P22 BID, BID, P15 BID, P13 BID, P11 BID, P22 BID, BID, P15 BID, P13 BID, P11 BID, VARIOLA VIRUS F1L

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL1Ligand/IonGLYCEROL
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:83 , LYS A:87 , TYR A:94 , HOH A:2016BINDING SITE FOR RESIDUE GOL A1202
2AC2SOFTWARESER A:86 , ARG A:89 , PRO A:174 , HOH A:2096BINDING SITE FOR RESIDUE ACT A1203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AJJ)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ajj A  64 TNILDYLSTERDHVMMAVQYYMSKQRLDDLYRQLPTKTRSYIDIINMYCDKVNNDYNRDMNIMYDMASTESFTVYDINNEVNTMLLDNKGLGVRLATISFITELGKRCMNPVETIKMFTLLSHTICDDCFIDYITDIS 201
                                    73        83        93       103       113       123       133       143       153       163       173       183       193        


Chain B from PDB  Type:PROTEIN  Length:29
                                                             
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                 5ajj B  81 DIIRNIARHLAQVGDSMDRSIPPGLVNGL 109
                                    90       100
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(-) Gene Ontology  (40, 40)

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 Related Entries

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        BID_HUMAN | P55957: 1zy3 2bid 2kbw 2m5b 2m5i 4bd2 4qve 4zeq 4zig 4zii 5c3f
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(-) Related Entries Specified in the PDB File

5ajk CRYSTAL STRUCTURE OF VARIOLA VIRUS VIRULENCE FACTOR F1L IN COMPLEX WITH HUMAN BAK BH3 DOMAIN