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(-) Description

Title :  CRYSTAL STRUCTURE OF BCL-XL HEXAMER
 
Authors :  R. Sreekanth, H. S. Yoon
Date :  27 Feb 14  (Deposition) - 04 Mar 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Keywords :  3D Domain Swap, Apoptosis, Anti-Apoptotic, Bcl-2 Family, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Rajan, M. Choi, Q. T. Nguyen, H. Ye, W. Liu, H. T. Toh, C. Kang, N. Kamariah, C. Li, H. Huang, C. White, K. Baek, G. Gruber, H. S. Yoon
Structural Transition In Bcl-Xl And Its Potential Association With Mitochondrial Calcium Ion Transport
Sci Rep V. 5 10609 2015
PubMed-ID: 26023881  |  Reference-DOI: 10.1038/SREP10609

(-) Compounds

Molecule 1 - BCL-2-LIKE PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETSUMO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: BCL-XL, UNP RESIDUES 1-209, WITH DELETION OF RESIDUES 45- 84
    Gene: BCL2L1, BCL2L, BCLX
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BCL2-L-1, APOPTOSIS REGULATOR BCL-X

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:124 , GLN A:125 , ASN A:128 , ASN A:175 , ASP A:176 , HOH A:414BINDING SITE FOR RESIDUE GOL A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PPI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PPI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PPI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PPI)

(-) Exons   (0, 0)

(no "Exon" information available for 4PPI)

(-) Sequences/Alignments

Asymmetric Unit
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ppi A   3 QSNRELVVDFLSYKLSQKGYSWSAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG 196
                                    12        22  ||    91       101       111       121       131       141       151       161       171       181       191     
                                                 25|                                                                                                               
                                                  85
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PPI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PPI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PPI)

(-) Gene Ontology  (71, 71)

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  B2CL1_HUMAN | Q07817
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B2CL1_HUMAN | Q07817: 1bxl 1g5j 1g5m 1gjh 1lxl 1maz 1r2d 1r2e 1r2g 1r2h 1r2i 1ysg 1ysi 1ysn 2b48 2lp8 2lpc 2m03 2m04 2me8 2me9 2mej 2o1y 2o21 2o22 2o2m 2o2n 2p1l 2pon 2yj1 2yq6 2yq7 2yxj 3cva 3fdl 3fdm 3inq 3io8 3pl7 3qkd 3r85 3sp7 3spf 3wiz 3zk6 3zln 3zlo 3zlr 4a1u 4a1w 4aq3 4bpk 4c52 4c5d 4cin 4ehr 4hnj 4ieh 4qve 4qvf 4qvx 4tuh 4z9v 5agw 5agx 5b1z 5c3g 5fmj 5fmk

(-) Related Entries Specified in the PDB File

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