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(-) Description

Title :  BCL-2 ALPHA BETA-1 COMPLEX
 
Authors :  B. J. Smith, E. F Lee, J. W. Checco, S. H. Gellman, W. D. Fairlie
Date :  04 Feb 15  (Deposition) - 09 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  B,C  (1x)
Biol. Unit 2:  A,D  (1x)
Keywords :  Bcl-2, Foldamer, Bim, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Checco, E. F. Lee, M. Evangelista, N. Sleebs, K. Rodgers, A. Pettikiriarachchi, N. Kershaw, G. A. Eddinger, D. G. Belair, J. L. Wilson, C. H. Eller, R. T. Raines, W. L. Murphy, B. J. Smith, S. H. Gellman, W. D. Fairlie
Alpha Beta Peptide Foldamers Targeting Intracellular Protein-Protein Interactions With Activity On Living Cells
J. Am. Chem. Soc. V. 137 11365 2015
PubMed-ID: 26317395  |  Reference-DOI: 10.1021/JACS.5B05896

(-) Compounds

Molecule 1 - APOPTOSIS REGULATOR BCL-2, BCL-2-LIKE PROTEIN 1, APOPTOSIS REGULATOR BCL-2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-34,29-44,92-207
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CONTAINS RESIDUES 1-34,92-207 OF BCL-2 AND THE UNSTRUCTURED LOOP BETWEEN RESIDUES 35-91 REPLACED IS WITH RESIDUES 35-50 OF BCL-XL
    Synonym: BCL2-L-1, APOPTOSIS REGULATOR BCL-X
 
Molecule 2 - BCL-2-LIKE PROTEIN 11
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 148-166
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BCL2-L-11, BCL2-INTERACTING MEDIATOR OF CELL DEATH

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x):  BC 
Biological Unit 2 (1x): A  D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric Unit (4, 12)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2AJE2Mod. Amino Acid(3S,4R)-4-AMINO-1-(3-CARBOXYPROPANOYL)PYRROLIDINE-3-CARBOXYLIC ACID
3MH84Mod. Amino Acid(2S)-2-AMINO-2-METHYLHEPT-6-ENOIC ACID
4XCP4Mod. Amino Acid(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
Biological Unit 1 (4, 6)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2AJE1Mod. Amino Acid(3S,4R)-4-AMINO-1-(3-CARBOXYPROPANOYL)PYRROLIDINE-3-CARBOXYLIC ACID
3MH82Mod. Amino Acid(2S)-2-AMINO-2-METHYLHEPT-6-ENOIC ACID
4XCP2Mod. Amino Acid(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
Biological Unit 2 (4, 6)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2AJE1Mod. Amino Acid(3S,4R)-4-AMINO-1-(3-CARBOXYPROPANOYL)PYRROLIDINE-3-CARBOXYLIC ACID
3MH82Mod. Amino Acid(2S)-2-AMINO-2-METHYLHEPT-6-ENOIC ACID
4XCP2Mod. Amino Acid(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 5AGW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AGW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:203 -Pro A:204

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AGW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AGW)

(-) Exons   (0, 0)

(no "Exon" information available for 5AGW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5agw A   8 GYDNREIVMKYIHYKLSQRGYEWDSEVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGP 204
                                    17        27   ||   95       105       115       125       135       145       155       165       175       185       195         
                                                  31|                                                                                                                  
                                                   90                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5agw B  10 DNREIVMKYIHYKLSQRGYEWDSEVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGP 204
                                    19        29 ||     97       107       117       127       137       147       157       167       177       187       197       
                                                31|                                                                                                                  
                                                 90                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:20
                                                    
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .................... Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                 5agw C  -1 xIxIAQxLRxIGDxFNxYYA  19
                            |||   |  9   |  | 19
                           -1-ACE |  |   |  |   
                             1|   |  |   |  |   
                              2-XCP  |   |  |   
                                  6-AJE  |  |   
                                     9-MH8  |   
                                        13-MH8  
                                           16-XCP


Chain D from PDB  Type:PROTEIN  Length:22
                                                      
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author ...................... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 5agw D  -1 xIxIAQxLRxIGDxFNxYYARR  21
                            |||   |  9   |  | 19  
                            |||   |  |   |  |     
                           -1-ACE |  |   |  |     
                             1|   |  |   |  |     
                              2-XCP  |   |  |     
                                  6-AJE  |  |     
                                     9-MH8  |     
                                        13-MH8    
                                           16-XCP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AGW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AGW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AGW)

(-) Gene Ontology  (237, 303)

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  Cis Peptide Bonds
    Gly A:203 - Pro A:204   [ RasMol ]  
 
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  5agw
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  B2CL1_HUMAN | Q07817
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  B2L11_HUMAN | O43521
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  BCL2_HUMAN | P10415
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B2CL1_HUMAN | Q07817: 1bxl 1g5j 1g5m 1gjh 1lxl 1maz 1r2d 1r2e 1r2g 1r2h 1r2i 1ysg 1ysi 1ysn 2b48 2lp8 2lpc 2m03 2m04 2me8 2me9 2mej 2o1y 2o21 2o22 2o2m 2o2n 2p1l 2pon 2yj1 2yq6 2yq7 2yxj 3cva 3fdl 3fdm 3inq 3io8 3pl7 3qkd 3r85 3sp7 3spf 3wiz 3zk6 3zln 3zlo 3zlr 4a1u 4a1w 4aq3 4bpk 4c52 4c5d 4cin 4ehr 4hnj 4ieh 4ppi 4qve 4qvf 4qvx 4tuh 4z9v 5agx 5b1z 5c3g 5fmj 5fmk
        B2L11_HUMAN | O43521: 1f95 2k7w 2nl9 2v6q 2vm6 2wh6 2yq6 2yq7 3d7v 3fdl 3io8 3io9 3kj0 3kj1 3kj2 4a1u 4a1w 4b4s 4d2m 4qvf 4uf3 4yj4 4zie 4zif 4zih 5agx 5c3g
        BCL2_HUMAN | P10415: 1g5m 1gjh 1ysw 2o21 2o22 2o2f 2w3l 2xa0 4aq3 4ieh 4lvt 4lxd 4man 5agx 5fcg 5jsn

(-) Related Entries Specified in the PDB File

5agx BCL-2 ALPHA BETA-1 LINEAR COMPLEX