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(-) Description

Title :  CRYSTAL STRUCTURE OF CORE/LATCH DIMER OF BAXI66A IN COMPLEX WITH BIDBH3
 
Authors :  P. E. Czabotar, A. Y. Robin, K. Krishna Kumar, D. Westphal, A. Z. Wardak G. V. Thompson, G. Dewson, P. M. Colman
Date :  28 Apr 15  (Deposition) - 22 Jul 15  (Release) - 22 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.19
Chains :  Asym. Unit :  A,C
Biol. Unit 1:  A,C  (2x)
Keywords :  Bax, Apoptosis, Bh3 Domain, Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Y. Robin, K. Krishna Kumar, D. Westphal, A. Z. Wardak, G. V. Thompson, G. Dewson, P. M. Colman, P. E. Czabotar
Crystal Structure Of Bax Bound To The Bh3 Peptide Of Bim Identifies Important Contacts For Interaction.
Cell Death Dis V. 6 E1809 2015
PubMed-ID: 26158515  |  Reference-DOI: 10.1038/CDDIS.2015.141

(-) Compounds

Molecule 1 - APOPTOSIS REGULATOR BAX
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BAX, BCL2L4
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BCL-2-LIKE PROTEIN 4,BCL2-L-4
 
Molecule 2 - BH3-INTERACTING DOMAIN DEATH AGONIST
    Chains: C
    Engineered: YES
    Fragment: BH3 MOTIF
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P22 BID,BID
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AC
Biological Unit 1 (2x): AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1EDO10Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:55 , THR A:56 , TRP A:158 , ASP A:159 , HOH A:303binding site for residue EDO A 201
2AC2SOFTWAREMET A:20 , ARG A:145 , HOH A:309binding site for residue EDO A 202
3AC3SOFTWAREASP A:154binding site for residue EDO A 203
4AC4SOFTWARELEU A:45 , ALA A:81 , LYS A:123 , SER A:126 , HOH A:306binding site for residue EDO A 204
5AC5SOFTWAREPRO A:88 , TRP A:139binding site for residue EDO A 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZII)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZII)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZII)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZII)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZII)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zii A  10 GGGPTSSEQIMKTGALLLQGFIQDRAGRELALDPVPQDASTKKLSESLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGT 167
                                    19        29       |45        55        65        75        85        95       105       115       125       135       145       155       165  
                                                      37|                                                                                                                           
                                                       44                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:24
                                                        
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                 4zii C  76 SESQEDIIRNIARHLAQVGDSMDR  99
                                    85        95
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZII)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZII)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZII)

(-) Gene Ontology  (163, 188)

Asymmetric Unit(hide GO term definitions)

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  4zii
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  BAX_HUMAN | Q07812
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  BID_HUMAN | P55957
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BAX_HUMAN | Q07812: 1f16 2g5b 2k7w 2lr1 3pk1 3pl7 4bd2 4bd6 4bd7 4bd8 4bdu 4s0o 4s0p 4uf2 4zie 4zif 4zig 4zih
        BID_HUMAN | P55957: 1zy3 2bid 2kbw 2m5b 2m5i 4bd2 4qve 4zeq 4zig 5ajj 5c3f

(-) Related Entries Specified in the PDB File

4zie 4zif 4zig 4zih